-
Allow
NA
s inrunningmean()
andrunningratio()
. -
Add
scale
argument totime_axis()
to allow control over time labels it gives, andformat
argument for customized labels. -
Add function
timeplot()
, which is likegrayplot()
but with x-axis being date/times.
-
Small change to documentation for
objectsizes()
(Mb -> MB) -
Added function
time_axis()
for helping set up axis labels for date/times.
- Include <limits.h> in a C file, for upcoming change to R.
-
Removed all pushbullet functions. They stopped supporting iOS which makes it useless for me.
-
Added warning to dec2hex() and add to documentation for that and hex2dec(), about maximum allowable values (2^31 - 1).
-
Revised bromanversion() to handle a case like "0.74".
-
Changed default max_jiggle in dotplot() to 0.45 (rather than NULL). Similarly changed default for maxvalue in jiggle() to 0.45.
-
Fixed typo in help file for excel_fig().
-
Changed the default "jiggle" method in jiggle() and dotplot() to be "random", as it seems to work better than the deterministic approach ("fixed").
-
Fixed problem in ciplot() to avoid warnings about some graphics parameters.
-
grayplot() now can take mgp graphics argument.
-
Added argument maxvalue to jiggle(), and max_jiggle to dotplot(), to better control the horizontal jiggling of points when there is a lot of data. (Fixes Issue #8)
-
Make it so you can adjust the vertical lines in dotplot() by including vlines.lwd and/or vlines.col. (Fixes Issue #7)
-
Make it so you can use v_over_h in dotplot()
-
Fixed potential problem in documentation, since plot() has moved from the graphics package to base.
-
Added an option to include grid lines in triplot(), and a separate function trigrid() that does the work and may be called separately.
-
Added twocolorpal() for a color palette that goes from one color (say blue) to another (say red) through a third (say white). That is, blue to white to red.
-
In vec2string(), add conjunction argument, to allow a different combining word than "and".
-
In ciplot(), allow argument main in ... to be passed to grayplot() and so on to plot().
-
Added function ciplot() for plotting a set of confidence intervals.
-
Added operators %nin%, %win%, and %wnin%.
- a %nin% b is like !(a %in% b)
- a %win% b is like a[a %in% b]
- a %wnin% b is like a[a %nin% b]
-
Added function spell_out() for spelling out numbers provided they are smallish integers. Goes with the datasets numbers and Numbers.
-
Added function revgray() that's like revrainbow() but white/black.
-
In dotplot(), make "Group" the default axis label whether rotated or not. (Was when rotate=TRUE, but not when rotate=FALSE.)
-
Use Markdown throughout documentation
-
Added function tritext(), to go with triplot(), tripoints(), trilines(), and triarrows(), but to add text annotations.
-
Revised openfile() so that it works on Linux.
-
Added function grayplot_na(). It's like grayplot, but includes boxes near the margins to show points that are missing x or y or both.
-
Added function vec2string() for turning a vector into a string with the items separated by commas and an "and". This is for use in R Markdown documents, to list a series of items.
-
Added function get_precision() for determining the precision of a number (the number of digits past the decimal point). I want to use this to compare two data sets with different amounts of rounding, to pick the more precise values.
-
Added function align_vectors() for aligning two vectors using their names attributes.
-
In grayplot(), have default be pch=21 and bg="lightblue" (that is, points that are lightblue with a black circle around them).
-
Add bgcolor argument to triplot(), to have the background of the rectangle be gray, by default.
-
Also change default background in grayplot() and theme_karl() from "gray80" to "gray90" (which is much less dark of a gray).
-
Fix bug in dotplot() in case that y has missing values (omit them).
- In note() for RPushbullet, force 'body' to be non-empty, because we get an error otherwise. In done(), use body=NULL to avoid similar errors.
- Added the function crayons() which is shorthand for brocolors("crayons"), but also can take a subset of color names, and uses grep to find partial matches. So you can use crayons("purple mountain") rather than brocolors("crayons")["Purple Mountain's Majesty"]
- Fix problem with pushbullet_devices(); output of RPushbullet::pbGetDevices()$devices is now a data frame; code assumes it's a list.
- Add 'mar' argument to excel_fig. (plot margins; passed to par())
-
Add "web" colors option (from https://clrs.cc) and an alternative set of Collaborative Cross colors to brocolors()
-
Add checks for ^C (user interrupt) in compare_rows().
-
Add data numbers and Numbers (numbers 1-20 spelled out in English; numbers in lower-case and Numbers capitalized)
- Remove attachfile() and loadfile() as I don't use them and they cause CRAN headaches.
- Add function maxabs() which just does max(abs(x)).
-
Add function dotplot() which is a simplified version of grayplot() for categorical x.
-
Add function jiggle() for horizontal jiggling, either "fixed" (deterministic, similar to the beeswarm package) or "random"; used in dotplot()
-
In grayplot(), have vlines and hlines follow from xlim and ylim, respectively, if they're provided.
- Add function fac2num() for converting a factor to numeric.
-
Add function excel_fig() for making a figure that shows the contents of a matrix, as it might appear in Excel.
-
Add function pushbullet_devices() for getting list of active pushbullet devices.
-
Add function compare_rows(), for comparing rows in a numeric matrix, either by proportion mismatches or RMS difference.
-
Add function add_commas(), for adding commas in large numbers, like 91310 -> "91,310"
- Add function stop_sending_errors(), the reverse of errors2pushbullet().
- Allow use of col.lab in grayplot(), for coloring the axis titles.
- Add function switchv(), a vectorized version of switch().
- Add function openfile() for opening a file using system().
- In theme_karl(), add black rectangle around the facet rectangles, too.
- Add function theme_karl() (aka karl_theme()), with a ggplot2 theme that removes the tick boxes and adds a black border.
- Delete functions get0() and get.() since there's going to be a get0 function in base R 3.2.0.
-
Add note() function, which is just a wrapper for RPushbullet::pbPost.
-
Revised make() to work with any directory (not just an R package). Also added a "target" argument.
- Add exit() function, which is just the same as q("no").
- Revise errors2pushbullet(), argument deviceind replaced by recipients.
-
Added argument v_over_h to grayplot(), controlling whether horizontal gridlines are on top of the vertical ones or vice versa.
-
Revisions to grayplot for better treatment of case of missing y. To avoid gridlines, use vlines=NA and/or hlines=NA.
- Added function attrnames() which is just names(attributes(object))
- Add function errors2pushbullet() which sets options(error) to use the RPushbullet package to send a push notification.
-
Add crayon colors to brocolors(), and plot_crayons function to view them. Change bg and bgpng for near-black background.
-
Add colwalpha function.
-
grayplot: change defaults for xat, yat, vlines, hlines
-
Added a simple utility function kbdate() for getting the date in a different format.
-
Added some unit tests using testthat.
- Add function make() for running make within a package directory, for use with devtools().
-
Add function brocolors() returning vectors of colors I use in figures.
-
Convert package to use roxygen2 for documentation.
- Revise tripoints() and related functions to invisibly return the (x,y) coordinates of the points, as plotted.
- Added qqline2(), which is like qqline() but for two datasets.
- Revise grayplot for better treatment of x- and y-axis titles, including the use of mgp/mgp.x/mgp.y.
- Added function histlines for making a histogram with lines().
-
Added function xlimlabel for determining appropriate xlim to add character string labels to a plot
-
Added functions strwidth2xlim and strwidth2lines for calculating margin lengths or x-axis limits that will fit a given set of text.
- In Description file, added "Depends: R (>= 2.15.0)", since get0 uses paste0. I could use paste(..., sep=""), but...
- Changed order of plotting of vertical and horizontal lines in grayplot(). Also added ability to control the margin parameters (spacing of axis labels and such).
- Improved convert2hex so it handles numbers > 255; added alias dec2hex. Added related function hex2dec.
-
Added function cf() for comparing vectors/matrices/lists, including proper handling of NAs
-
Added functions get0() and get.() which combine get and paste.
-
Added grayplot() for plots with gray backgrounds.
-
Added manyboxplot() for making boxplot-like figures with many groups
-
Added paste.() function, which is just paste(..., sep=".")
-
Added function revrainbow(), which is just rev(rainbow(start=0, end=2/3, ...))
-
Added paste00(), paste..(), paste0.() and paste.0()
-
runningmean() can now also calculate a running SD.
-
Revised bromanversion() to use packageVersion().
-
Simplified myround(), using sprintf().
- Added NAMESPACE (for R 2.14.0)
-
Revised normalize() to handle NAs.
-
Added function winsorize() for winsorizing a numeric vector.
-
Added function bromanversion() to print installed version number.
- Added function objectsizes(), for calculating the sizes of the objects in one's workspace.
-
Added functions triplot(), tripoints(), trilines(), triarrow() for plotting Holmans triangle (an equilateral triangle used to depict trinomial distributions).
-
Added function venn() for drawing a to-scale Venn diagram.
-
Added function arrowlocator() for using locator() to indicate the endpoints of an arrow and then draw it.
- Fixed a bug in permtest (the pval argument didn't work).
- Deleted the nqrank() function, as I've now placed it within R/qtl.
- Slight change to nqrank, so that -Inf values are replaced by 10 less than the minimum of any finite values (rather than 10 more than that minimum).
- Revised runningmean and runningratio so that the statistics can be calculated at arbitrary locations. Also revised them so that the input do not need to have sorted positions.
-
Slight change to nqrank, to preserve the mean and SD.
-
Fixed a few links in the help files.
-
Revised h() to conform to a change in R.
- Slight change to nqrank, so that ties are not jittered by default, but may be (if one uses the argument jitter=TRUE).
- Updated license to GPL-3
-
Revised perm.test and paired.perm.test so that they can return the actual permutation results (rather than just the p-value), though the default is still to just return the p-value.
-
Fixed a bug in myround().
-
Revised attachfile and attachwork so that they return (invisibly) TRUE/FALSE according to whether the file was found.
-
Also added an argument 'verbose'; if TRUE and the file can't be loaded, a warning is given.
- Added a function normalize() for doing quantile normalization.
-
Modified fisher() so that the p-value is Prop'n >= rather than just >.
-
Added a similar function, chisq() for doing a chi-square test with p-value calculated by simulation. In 0.20-2, suppressed warnings produced by chisq.test.
-
Added a function runningratio, for calculating sum(numerator)/sum(denominator) in sliding window.
-
Fixed some errors in the help files.
- Fixed a bug in loadwork().
- Added a function h() for getting access to html help files while running R via ESS within emacs.
-
Added a function runningmean().
-
Fixed a bug in paired.perm.test().
- Added a function myround().
-
Added a function mypairs(), similar to pairs() but producing only the upper triangle.
-
Added a convert2hex() function.
- Added attachfile() and loadfile(), similar to loadwork() and attachwork().
- Added little utility functions loadwork() and attachwork() for loading or attaching .RData files of the form "dir*/.RData", when * is an integer, and especially when dir = "Work".
-
Added perm.test and paired.perm.test for getting p-values for a two-sample t-statistic by permutation.
-
There was an obvious bug in the function fisher(), which is now fixed.
-
This is a package to contain miscellaneous R functions that I find useful.
-
Currently, it contains functions to get SEs of sample quantiles, a sampling version of fisher.test, a re-parse of the output of qr(), simulation from a multivariate normal distribution, and numerical integration by Simpson's rule.