diff --git a/prody/proteins/interactions.py b/prody/proteins/interactions.py index d0291dcea..99fe82bf4 100644 --- a/prody/proteins/interactions.py +++ b/prody/proteins/interactions.py @@ -3749,35 +3749,35 @@ def runDali(pdb, chain, **kwargs): :arg cutoff_len: Length of aligned residues < cutoff_len (must be an integer or a float between 0 and 1) See searchDali for more details - by default 0.5 + Default is 0.5 :type cutoff_len: float :arg cutoff_rmsd: RMSD cutoff (see searchDali) - by default 1.0 + Default is 1.0 :type cutoff_rmsd: float - :arg subsetDali: fullPDB, PDB25, PDB50, PDB90 - by default is 'fullPDB' - :type subsetDali: str + :arg subset_Dali: fullPDB, PDB25, PDB50, PDB90 + Default is 'fullPDB' + :type subset_Dali: str :arg fixer: The method for fixing lack of hydrogen bonds - by default is 'pdbfixer' + Default is 'pdbfixer' :type fixer: 'pdbfixer' or 'openbabel' :arg subset: subsets of atoms: 'ca', 'bb', 'heavy', 'noh', 'all' (see matchChains()) - by default is 'ca' + Default is 'ca' :type subset: str :arg seqid: Minimum value of the sequence identity (see matchChains()) - by default 5 + Default 5 :type seqid: float :arg overlap: percent overlap (see matchChains()) - by default 50 + Default 50 :type overlap: float :arg folder_name: Folder where the results will be collected - by default is 'struc_homologs' + Default is 'struc_homologs' :type folder_name: str """