Naive Bayes Classfication Implementation.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Naive Bayes Classification Algorithm Implementation "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 49,
   "metadata": {},
   "outputs": [],
   "source": [
    "import pandas as pd\n",
    "import numpy as np\n",
    "import matplotlib.pyplot as plt\n",
    "%matplotlib inline\n",
    "\n",
    "# from sklearn.naive_bayes import  \n",
    "from sklearn.naive_bayes import GaussianNB\n",
    "from sklearn.model_selection import train_test_split\n",
    "from sklearn.metrics import accuracy_score,auc,roc_auc_score"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 19,
   "metadata": {},
   "outputs": [],
   "source": [
    "data = pd.read_csv(\"titanic.csv\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 20,
   "metadata": {},
   "outputs": [
    {
     "data": {
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       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>PassengerId</th>\n",
       "      <th>Survived</th>\n",
       "      <th>Pclass</th>\n",
       "      <th>Name</th>\n",
       "      <th>Sex</th>\n",
       "      <th>Age</th>\n",
       "      <th>SibSp</th>\n",
       "      <th>Parch</th>\n",
       "      <th>Ticket</th>\n",
       "      <th>Fare</th>\n",
       "      <th>Cabin</th>\n",
       "      <th>Embarked</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>1</td>\n",
       "      <td>0</td>\n",
       "      <td>3</td>\n",
       "      <td>Braund, Mr. Owen Harris</td>\n",
       "      <td>male</td>\n",
       "      <td>22.0</td>\n",
       "      <td>1</td>\n",
       "      <td>0</td>\n",
       "      <td>A/5 21171</td>\n",
       "      <td>7.2500</td>\n",
       "      <td>NaN</td>\n",
       "      <td>S</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>2</td>\n",
       "      <td>1</td>\n",
       "      <td>1</td>\n",
       "      <td>Cumings, Mrs. John Bradley (Florence Briggs Th...</td>\n",
       "      <td>female</td>\n",
       "      <td>38.0</td>\n",
       "      <td>1</td>\n",
       "      <td>0</td>\n",
       "      <td>PC 17599</td>\n",
       "      <td>71.2833</td>\n",
       "      <td>C85</td>\n",
       "      <td>C</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>3</td>\n",
       "      <td>1</td>\n",
       "      <td>3</td>\n",
       "      <td>Heikkinen, Miss. Laina</td>\n",
       "      <td>female</td>\n",
       "      <td>26.0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>STON/O2. 3101282</td>\n",
       "      <td>7.9250</td>\n",
       "      <td>NaN</td>\n",
       "      <td>S</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>4</td>\n",
       "      <td>1</td>\n",
       "      <td>1</td>\n",
       "      <td>Futrelle, Mrs. Jacques Heath (Lily May Peel)</td>\n",
       "      <td>female</td>\n",
       "      <td>35.0</td>\n",
       "      <td>1</td>\n",
       "      <td>0</td>\n",
       "      <td>113803</td>\n",
       "      <td>53.1000</td>\n",
       "      <td>C123</td>\n",
       "      <td>S</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>5</td>\n",
       "      <td>0</td>\n",
       "      <td>3</td>\n",
       "      <td>Allen, Mr. William Henry</td>\n",
       "      <td>male</td>\n",
       "      <td>35.0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>373450</td>\n",
       "      <td>8.0500</td>\n",
       "      <td>NaN</td>\n",
       "      <td>S</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "   PassengerId  Survived  Pclass  \\\n",
       "0            1         0       3   \n",
       "1            2         1       1   \n",
       "2            3         1       3   \n",
       "3            4         1       1   \n",
       "4            5         0       3   \n",
       "\n",
       "                                                Name     Sex   Age  SibSp  \\\n",
       "0                            Braund, Mr. Owen Harris    male  22.0      1   \n",
       "1  Cumings, Mrs. John Bradley (Florence Briggs Th...  female  38.0      1   \n",
       "2                             Heikkinen, Miss. Laina  female  26.0      0   \n",
       "3       Futrelle, Mrs. Jacques Heath (Lily May Peel)  female  35.0      1   \n",
       "4                           Allen, Mr. William Henry    male  35.0      0   \n",
       "\n",
       "   Parch            Ticket     Fare Cabin Embarked  \n",
       "0      0         A/5 21171   7.2500   NaN        S  \n",
       "1      0          PC 17599  71.2833   C85        C  \n",
       "2      0  STON/O2. 3101282   7.9250   NaN        S  \n",
       "3      0            113803  53.1000  C123        S  \n",
       "4      0            373450   8.0500   NaN        S  "
      ]
     },
     "execution_count": 20,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "data.head()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Data Cleaning "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 21,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "Index(['PassengerId', 'Survived', 'Pclass', 'Name', 'Sex', 'Age', 'SibSp',\n",
       "       'Parch', 'Ticket', 'Fare', 'Cabin', 'Embarked'],\n",
       "      dtype='object')"
      ]
     },
     "execution_count": 21,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "data.columns"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 22,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Remove unncessary column\n",
    "\n",
    "data.drop(['PassengerId','Name','SibSp','Parch', 'Ticket','Cabin', 'Embarked'],axis=1,inplace=True)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 23,
   "metadata": {},
   "outputs": [
    {
     "data": {
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       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>Survived</th>\n",
       "      <th>Pclass</th>\n",
       "      <th>Sex</th>\n",
       "      <th>Age</th>\n",
       "      <th>Fare</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>0</td>\n",
       "      <td>3</td>\n",
       "      <td>male</td>\n",
       "      <td>22.0</td>\n",
       "      <td>7.2500</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>1</td>\n",
       "      <td>1</td>\n",
       "      <td>female</td>\n",
       "      <td>38.0</td>\n",
       "      <td>71.2833</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>1</td>\n",
       "      <td>3</td>\n",
       "      <td>female</td>\n",
       "      <td>26.0</td>\n",
       "      <td>7.9250</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>1</td>\n",
       "      <td>1</td>\n",
       "      <td>female</td>\n",
       "      <td>35.0</td>\n",
       "      <td>53.1000</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>0</td>\n",
       "      <td>3</td>\n",
       "      <td>male</td>\n",
       "      <td>35.0</td>\n",
       "      <td>8.0500</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "   Survived  Pclass     Sex   Age     Fare\n",
       "0         0       3    male  22.0   7.2500\n",
       "1         1       1  female  38.0  71.2833\n",
       "2         1       3  female  26.0   7.9250\n",
       "3         1       1  female  35.0  53.1000\n",
       "4         0       3    male  35.0   8.0500"
      ]
     },
     "execution_count": 23,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "data.head()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 25,
   "metadata": {},
   "outputs": [],
   "source": [
    "X = pd.get_dummies(data,columns=['Sex'],drop_first=True)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 26,
   "metadata": {},
   "outputs": [
    {
     "data": {
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       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>Survived</th>\n",
       "      <th>Pclass</th>\n",
       "      <th>Age</th>\n",
       "      <th>Fare</th>\n",
       "      <th>Sex_male</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>0</td>\n",
       "      <td>3</td>\n",
       "      <td>22.0</td>\n",
       "      <td>7.2500</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>1</td>\n",
       "      <td>1</td>\n",
       "      <td>38.0</td>\n",
       "      <td>71.2833</td>\n",
       "      <td>0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>1</td>\n",
       "      <td>3</td>\n",
       "      <td>26.0</td>\n",
       "      <td>7.9250</td>\n",
       "      <td>0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>1</td>\n",
       "      <td>1</td>\n",
       "      <td>35.0</td>\n",
       "      <td>53.1000</td>\n",
       "      <td>0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>0</td>\n",
       "      <td>3</td>\n",
       "      <td>35.0</td>\n",
       "      <td>8.0500</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
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      "text/plain": [
       "   Survived  Pclass   Age     Fare  Sex_male\n",
       "0         0       3  22.0   7.2500         1\n",
       "1         1       1  38.0  71.2833         0\n",
       "2         1       3  26.0   7.9250         0\n",
       "3         1       1  35.0  53.1000         0\n",
       "4         0       3  35.0   8.0500         1"
      ]
     },
     "execution_count": 26,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "X.head()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 27,
   "metadata": {},
   "outputs": [],
   "source": [
    "y = data['Survived']"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 28,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "Survived      0\n",
       "Pclass        0\n",
       "Age         177\n",
       "Fare          0\n",
       "Sex_male      0\n",
       "dtype: int64"
      ]
     },
     "execution_count": 28,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "# Check missing values\n",
    "\n",
    "X.isna().sum()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 29,
   "metadata": {},
   "outputs": [],
   "source": [
    "X['Age'] =  X.Age.fillna(X.Age.mean())"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 30,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "Survived    0\n",
       "Pclass      0\n",
       "Age         0\n",
       "Fare        0\n",
       "Sex_male    0\n",
       "dtype: int64"
      ]
     },
     "execution_count": 30,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "X.isna().sum()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Train and Test Split "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 42,
   "metadata": {},
   "outputs": [],
   "source": [
    "X_train, X_test, y_train, y_test = train_test_split(X,y,test_size=0.2)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Model Training "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 43,
   "metadata": {},
   "outputs": [],
   "source": [
    "model = GaussianNB()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 44,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "GaussianNB()"
      ]
     },
     "execution_count": 44,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "model.fit(X_train,y_train)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 45,
   "metadata": {},
   "outputs": [],
   "source": [
    "y_pred = model.predict(X_test)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 46,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "1.0"
      ]
     },
     "execution_count": 46,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "accuracy_score(y_test,y_pred)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 47,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "1.0"
      ]
     },
     "execution_count": 47,
     "metadata": {},
     "output_type": "execute_result"
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   ],
   "source": [
    "model.score(X_test,y_test)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 50,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "1.0"
      ]
     },
     "execution_count": 50,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "roc_auc_score(y_test,y_pred)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "The model is overfitting so we'll check later."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
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