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jvhagey/README.md

Hi 👋 My name is Jill Hagey

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Last Commit

I am a bioinformatian working at the Division of Health Quality Promotion at the CDC. My repos include those for work and those for outside of work.

  • 🌍 I'm based in Atlanta, GA
  • 📫 You can contact me at [email protected]
  • 🌱 I’m currently learning Nextflow and Github actions
  • 😄 Pronouns: they/them/theirs
  • 🔭 I’m currently working on 🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens

🛠️ Languages and Tools

linux linux linux

Nextflow Python R Bash

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  1. CDRF_Metagenomics CDRF_Metagenomics Public

    Scripts used for processing of metagenomic data on CDRF project

    Python 1

  2. Depeters_RumenSampling_2018 Depeters_RumenSampling_2018 Public

    16s analysis for Depeters rumen sampling study

    HTML

  3. jvhagey.github.io jvhagey.github.io Public

    Home page that links all github projects

    SCSS

  4. public_health_viral_genomics public_health_viral_genomics Public

    Forked from theiagen/public_health_viral_genomics

    WDL

  5. StaPH-B/docker-builds StaPH-B/docker-builds Public

    📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics

    Dockerfile 197 125

  6. StaPH-B/titan StaPH-B/titan Public archive

    Public health bioinformatics repository for WDL workflows to analyze viral genomes.

    WDL 3 1