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mapping_geonetwork_geoflow.R
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mapping_geonetwork_geoflow.R
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# geoflow_entities
# https://docs.google.com/spreadsheets/d/1iG7i3CE0W9zVM3QxWfCjoYbqj1dQvKsMnER6kqwDiqM/edit#gid=0
# Geoflow entities Data Structure => Identifier Title Description Subject Creator Date Type Language SpatialCoverage TemporalCoverage Relation Rights Provenance Data
# This Data Structure => Identifier Title Description Subject Creator Date Type Language SpatialCoverage TemporalCoverage Relation Rights Provenance Data path gps_file_name Number_of_Pictures
############################################################
################### Packages #######################
############################################################
rm(list=ls())
working_directory <- "/tmp"
setwd(working_directory)
require(stringr)
require(jsonlite)
require(gsheet)
require(dplyr)
require(geoflow)
library(googledrive)
library(httr)
library(XML)
projets_COI_gsheet <-"https://docs.google.com/spreadsheets/d/1dQLucq5OAm1qBHPuJv_7mDEOWq9x0Cyknp6ecVtGtS4/edit?usp=sharing"
projets_COI_metadata <- as.data.frame(gsheet::gsheet2tbl(projets_COI_gsheet))
projets_COI_metadata$Projet_Acronym
# geonetwork_csv_gsheet <-"https://docs.google.com/spreadsheets/d/1fiprnSskIEsEgeL4IEU2cja4O0xSAHFrCgrfgW6LG_U/edit?usp=sharing"
geonetwork_csv_gsheet <-"https://docs.google.com/spreadsheets/d/1EpXhvRG20AsbSlsw0LCxGonrL3-pZ3Kq_0YoAM2ZQbU/edit?usp=sharing"
geonetwork_metadata <- as.data.frame(gsheet::gsheet2tbl(geonetwork_csv_gsheet))
head(geonetwork_metadata)
# Geoflow entities Data Structure => Identifier Title Description Subject Creator Date Type Language SpatialCoverage TemporalCoverage Relation Rights Provenance Data
geoflow_metadata <- data.frame(Projet=character(),
Identifier=character(),
Title=character(),
Description=character(),
Subject=character(),
Creator=character(),
Date=character(),
Type=character(),
Language=character(),
# Format=character(),
SpatialCoverage=character(),
TemporalCoverage=character(),
Relation=character(),
Rights=character(),
Provenance=character(),
Data=character()
)
# head(geoflow_metadata)
number_row<-nrow(geonetwork_metadata)
for (i in 1:number_row) {
# fe834fa6-2b0e-4dab-b819-c676be113ab5.xml
# fb569ade-6ff5-4199-812d-5661c7f135a8.xml
# e83a33c1-2f11-4aff-9aba-6a6e20c19a67.xml
# e61a4407-8441-409b-8bc1-115229043892.xml
# d0bba57e-bad5-4c0e-b4ec-623f7d053974.xml
# cf6c0c14-aeff-465f-beb6-baf4ca8b846e.xml
# b3989639-67ea-4482-b4e7-a668cc1b12ad.xml
# a7a60757-b19e-4fd9-9765-f500c317bb9b.xml
# 11884899-ccd5-44c3-a977-60706e80e5fe.xml
# 837197a1-d6e5-4945-a9c8-4f0802e3a0ff.xml
# 049879b2-4a6c-4b30-8bd4-30d526221d91.xml
# 682f74cd-a5ba-4f3e-ab23-602c56dbcf01.xml
# 676d69f0-bba2-42e9-84df-135b15942479.xml
# 075b378b-112d-4da8-afc8-5ce1325616cc.xml
# 48a96d90-85c7-4842-8e12-a431fae92378.xml
# 5b62079c-0987-410b-b8ca-6777eb9bd397.xml
# 4a068dbe-f4c7-4617-8813-fdcdc56994aa.xml
# 03eb3cb8-0b8d-4efe-b592-1e24709e5a93.xml
cat(paste0("\nCurrent line: ",i))
project_name <- geonetwork_metadata$Projet[i]
this_project <- projets_COI_metadata %>% filter(Projet_Acronym == project_name)
project_email <- paste0(tolower(this_project$Projet_Acronym),"@coi-ioc.org")
# charge_mission_COI <- this_project$Charge_Mission_COI
charge_mission_COI <- "[email protected]"
Projet <- project_name
# Identifier <- str_split(stringi::stri_trans_general(tolower(gsub("[\\'-/&\'^() ]+","_",geonetwork_metadata$title[i])), "Latin-ASCII"),pattern = "_")
Identifier <- str_split(stringi::stri_trans_general(tolower(gsub("[][!#$%()*,.:;<=>@^ `'’|~.{}]","_",geonetwork_metadata$title[i])), "Latin-ASCII"),pattern = "_")
clean_identifier <-""
for (j in 1:length(Identifier[[1]])){
if (nchar(Identifier[[1]][j]) > 3 && Identifier[[1]][j]!="pour" && Identifier[[1]][j]!="dans"){
clean_identifier <- paste0(clean_identifier,"_",Identifier[[1]][j])
}
}
Identifier <- paste0("id:",substr(clean_identifier,2,nchar(clean_identifier)),";")
##########################################################################################################################
##########################################################################################################################
this_wd<-getwd()
file_name <- paste0(geonetwork_metadata$uuid[i],".xml")
setwd("/tmp/OGC_19139_xml_files")
if (!file.exists(file_name)){
download.file(paste0("http://thredds.oreme.org:8080/geonetwork/srv/fre/xml.metadata.get?uuid=",geonetwork_metadata$uuid[i]),destfile = file_name)
}
OGC_19139 <- ISOMetadata$new()
# # OGC_19139 <- geometa::readISO19139(paste0(geonetwork_metadata$uuid[i],".xml"))
xml <- xmlParse(paste0("/tmp/OGC_19139_xml_files/",geonetwork_metadata$uuid[i],".xml"))
# # xml <- xmlParse("/tmp/OGC_19139_xml_files/d1ecc38a-9418-4915-870d-58e4751f8af4.xml")
OGC_19139$decode(xml = xml)
setwd(this_wd)
##########################################################################################################################
##########################################################################################################################
Title <- geonetwork_metadata$title[i]
##########################################################################################################################
##########################################################################################################################
originators <-""
contact_originators <-""
contacts <- OGC_19139$identificationInfo[[1]]$pointOfContact
for (c in 1:length(contacts)){
originator <-NA
cat(contacts[[c]]$role$value)
if(contacts[[c]]$role$value=="originator" && length(contacts[[c]]$individualName) >0){
cat(contacts[[c]]$individualName)
originator <- contacts[[c]]$individualName
originator <- switch(originator,
"Rezah BADAL"="[email protected]",
"Didier SLACHMUYLDERS"="[email protected]",
"Lionel BIGOT"="[email protected]",
"Eric DUTRIEUX"="[email protected]",
"Jean MAHARAVO"="[email protected]",
"Jean Pascal QUOD"="[email protected]",
"Roland TROADEC"="[email protected]",
"O.R.J RATOMAHENINA"="[email protected]",
"Aurélie Thomassin"="[email protected]",
"Emilie Anderson"="[email protected]",
"Sharveen PERSAND"="[email protected]",
"Sandy Davies"="[email protected]",
"Pierre VALADE"="[email protected]",
"David OBURA"="[email protected]",
contacts[[c]]$individualName
)
}
# if(is.null(originator)){originator <-NA}
if(!is.na(originator)){originators <- paste0(originators,",",originator)}
}
if(!is.na(originators)){
contact_originators <- paste0("\noriginator:",sub(",","",originators),";")
if(contact_originators=="\noriginator:;"){
contact_originators <-""
}
}
Creator <- paste0("creator:",project_email,";\npublisher:[email protected];\nowner:[email protected];\nmetadata:[email protected],[email protected],[email protected],",charge_mission_COI,";",contact_originators)
##########################################################################################################################
##########################################################################################################################
topics <-""
for (t in 1:length(OGC_19139$identificationInfo[[1]]$topicCategory)){
topic <- OGC_19139$identificationInfo[[1]]$topicCategory[[t]]$value
topics <-paste0(topics,",",topic)
}
topics <- paste0("\ntopicCategory:",sub(",","",topics),";")
type <-NULL
thesaurus <-NULL
all_keywords <-NULL
all_keywords <-data.frame(keyword = character(), thesaurus = character(),stringsAsFactors=FALSE)
for(word in 1:length(OGC_19139$identificationInfo[[1]]$descriptiveKeywords)){
# thesaurus <- OGC_19139$identificationInfo[[1]]$descriptiveKeywords[[word]]$thesaurusName$title
type <- OGC_19139$identificationInfo[[1]]$descriptiveKeywords[[word]]$type$value
if (nchar(type)==0){
type <- "partners"
}
keywords <- OGC_19139$identificationInfo[[1]]$descriptiveKeywords[[word]]$keyword
for(k in 1:length(keywords)){
if(is.character(keywords[k][[1]])){
keyword <- OGC_19139$identificationInfo[[1]]$descriptiveKeywords[[word]]$keyword[[k]]
} else {
keyword <- OGC_19139$identificationInfo[[1]]$descriptiveKeywords[[word]]$keyword[[k]]$value
}
all_keywords[nrow(all_keywords)+1,] <- c(keyword, type)
}
}
thesaurus_lines <-""
for (theme in all_keywords %>% distinct(thesaurus) %>% pull()){
df <- all_keywords %>% select(keyword,thesaurus) %>% filter(thesaurus == theme)
thesaurus_line <- paste0(theme,":")
for (ky in 1:length(df$keyword)){
thesaurus_line <- paste0(thesaurus_line,",",df$keyword[ky])
}
thesaurus_lines <- gsub(":,",":",paste0(thesaurus_lines,";\n",thesaurus_line))
}
# thesaurus_lines <- sub("\n","",gsub(":,",":",thesaurus_lines))
Subject <- sub(";\n","",paste0(thesaurus_lines,";",topics))
Subject
# Subject <- paste0("GENERAL:",paste0("Projet ",project_name," (FED/COI)"),",",gsub("###",",",geonetwork_metadata$keyword[i]),";",topics)
##########################################################################################################################
##########################################################################################################################
Description <- paste0("abstract:",gsub("###","",gsub(":",",",geonetwork_metadata$abstract[i])),";")
if(Description=="abstract:;"){
Description="abstract:To be done;"
}
##########################################################################################################################
##########################################################################################################################
Date <- geonetwork_metadata$metadatacreationdate[i]
##########################################################################################################################
##########################################################################################################################
Type <- "dataset"
# Format <- geonetwork_metadata$Format[i]
##########################################################################################################################
##########################################################################################################################
Language <- "fra"
##########################################################################################################################
##########################################################################################################################
thumbnail <-""
link <-""
old_metadata <- paste0("http:OLD metadata@http://thredds.oreme.org:8080/geonetwork/srv/fre/catalog.search#/metadata/",geonetwork_metadata$uuid[i])
if(!is.na(this_project$Projet_Logo)){
logo <- paste0("\nthumbnail:Logo du projet ",project_name,"@",gsub("open", "uc",this_project$Projet_Logo))
}else{
logo <- paste0("\nthumbnail:Logo du projet ",project_name,"@","https://www.commissionoceanindien.org/wp-content/uploads/2019/02/french-coi-logo-100px-french-logo.png")
}
if(!is.na(geonetwork_metadata$link[i])){
link <- gsub("###","\nhttp:OLD Geonetwork link@",gsub("######", "\nhttp:OLD Geonetwork link@",geonetwork_metadata$link[i]))
link <- gsub("http:OLD Geonetwork link@https://www.zotero.org","http:OLD Zotero[cf Zotero reference of the document related to this dataset]@https://www.zotero.org",link)
}
if(!is.na(geonetwork_metadata$image[i])){old_thumbnails <- gsub("###", "\nthumbnail:OLD aperçu@",paste0("\nthumbnail:OLD aperçu@",geonetwork_metadata$image[i]))}
old_Relation <-paste0(old_metadata,link,old_thumbnails)
new_Relation <-""
new_line <-""
relation_geonetwork <- str_split(old_Relation,pattern = "\n")
for (f in 1:length(relation_geonetwork[[1]])){
line <- relation_geonetwork[[1]][f]
prefix <- str_split(line,pattern = "@")[[1]][1]
url <- sub(".*@","",line)
#we check if the url comes is delivered by geonetwork and upload the file in google drive (required to keep the file when metadat will be removed)
if(grepl("&fname=",url)){
cat("Drive\n")
file_name_drive <- sub('&access=public','',sub('.*&fname=','', url))
filter=paste0("name contains '",file_name_drive,"'")
google_drive_file <- drive_find(q = filter)
# we check if the file already exists on google drive
if(nrow(google_drive_file)>0){
cat("is Drive \n")
same_relation_on_drive <-""
# we just use the first result if the same file is stored in different drive repositories
for(file in google_drive_file$id){
if(is_mine(as_dribble(as_id(file)))){
google_drive_file_url <- paste0("https://drive.google.com/uc?id=",file)
if(grepl(".zip",file_name_drive) || grepl(".xls",file_name_drive)){
cat("Drive zip \n")
same_relation_on_drive <-paste0("http:",file_name_drive,"[Get the file ",file_name_drive," on drive]@",google_drive_file_url)
# new_line <- paste0(line,"\n",same_relation_on_drive)
new_line <- paste0(same_relation_on_drive)
}else if(prefix=="thumbnail:OLD aperçu"){
cat("Drive thumbnail \n")
# same_relation_on_drive <-paste0("thumbnail:NEW aperçu [see ",file_name_drive," on Drive]@",google_drive_file_url)
same_relation_on_drive <-paste0("thumbnail:NEW aperçu@",google_drive_file_url)
new_line <- paste0(same_relation_on_drive)
}else if (grepl(".png",file_name_drive) || grepl(".jpeg",file_name_drive) || grepl(".jpg",file_name_drive)){
cat("Drive Image \n")
same_relation_on_drive <-paste0("http:NEW IMAGE [see ",file_name_drive," on Drive]@",google_drive_file_url)
# new_line <- paste0(line,"\n",same_relation_on_drive)
new_line <- paste0(same_relation_on_drive)
}else{
cat("Drive Z \n")
same_relation_on_drive <-paste0("http:NEW STUFF [see ",file_name_drive," on drive]@",url)
new_line <- paste0(line,"\n",same_relation_on_drive)
}
}
# new_line <- paste0(same_relation_on_drive)
# new_line <- paste0(line,"\n",same_relation_on_drive)
}
# if the file is not on google drive we download it to upload it later
}else{
cat(paste0("Nothing for: ",file_name_drive,"\n"))
download_url <- sub("&access=public","",url)
download.file(download_url, destfile=paste0("/tmp/download/",file_name_drive))
new_line <- line
}
# Relation <-paste0(Relation,same_relation_on_drive)
}else{
cat("Pas Drive\n")
new_url <-NULL
new_url <- switch(url,
"https://drive.google.com/file/d/0B0FxQQrHqkh0VC1ZS0huQk1DLW8/view"="https://www.zotero.org/groups/303882/commission_ocean_indien/items/itemKey/I7ZKQRCP",
"http://mdst-macroes.ird.fr/COI/www.commissionoceanindien.org/fileadmin/resources/ISLANDSpdf/Review_of_Coral_Reef_Ecosystem_Management_Approaches_in_the_ESA_IO_FINAL_with_Exec_Summ.pdf"="https://www.zotero.org/groups/303882/commission_ocean_indien/items/itemKey/TUMSVSZ9",
"http://commissionoceanindien.org/fileadmin/resources/ISLANDSpdf/ISLANDS_Programme_for_financial_protection_against_climatic_and_natural_disasters_Mauritius_Final_Draft_report.pdf"="https://www.zotero.org/groups/commission_ocean_indien/items/itemKey/46QWHMVM",
"http://commissionoceanindien.org/fileadmin/resources/ISLANDSpdf/ISLANDS_Programme_for_financial_protection_against_climatic_and_natural_disasters_Madagascar_Final_Draft_report.pdf"="https://www.zotero.org/groups/commission_ocean_indien/items/itemKey/EHZE9FI7",
"http://commissionoceanindien.org/fileadmin/resources/ISLANDSpdf/ISLANDS_Programme_for_financial_protection_against_climatic_and_natural_disasters_Comores_Final_Draft_report.pdf"="https://www.zotero.org/groups/commission_ocean_indien/items/itemKey/PFVQRSKF",
"http://commissionoceanindien.org/fileadmin/resources/ISLANDSpdf/ISLANDS_Programme_for_financial_protection_against_climatic_and_natural_disasters_Zanzibar_Final_Draft_report.pdf"="https://www.zotero.org/groups/303882/commission_ocean_indien/items/collectionKey/X54RW4PL/itemKey/5RB8E9J3",
"http://mdst-macroes.ird.fr/COI/www.commissionoceanindien.org/fileadmin/projets/smartfish/FAO/Fish_Consumption_Survey___Mauritius.pdf"="https://www.zotero.org/groups/303882/commission_ocean_indien/items/collectionKey/VWE2KPMW/itemKey/T2T4ZFDA",
"http://mdst-macroes.ird.fr/COI/www.commissionoceanindien.org/fileadmin/projets/smartfish/Rapport/SF46.pdf"="https://www.zotero.org/groups/303882/commission_ocean_indien/items/collectionKey/VWE2KPMW/itemKey/UTZ488FS",
"http://mdst-macroes.ird.fr/COI/www.commissionoceanindien.org/fileadmin/resources/ISLANDSpdf/Review_of_Coral_Reef_Ecosystem_Management_Approaches_in_the_ESA_IO_FINAL_with_Exec_Summ.pdf"="https://www.zotero.org/groups/303882/commission_ocean_indien/items/collectionKey/X54RW4PL/itemKey/FKC47KAU",
"http://thredds.oreme.org:8080/geonetwork/srv/fre/catalog.search#/metadata/6aff3a69-62f9-4afb-86b4-2563cf23e18b"="http://thredds.oreme.org:8080/geonetwork/srv/fre/catalog.search#/metadata/geomorphologie_sensibilite_marine_recifale_sud-est_maurice",
"http://thredds.oreme.org:8080/geonetwork/srv/fre/catalog.search#/metadata/d1ecc38a-9418-4915-870d-58e4751f8af4"="http://thredds.oreme.org:8080/geonetwork/srv/fre/catalog.search#/metadata/ensemble_points_richesse_ecologique_relative_marine_recifale_sud-est_maurice",
"http://thredds.oreme.org:8080/geonetwork/srv/fre/catalog.search#/metadata/fbb93b89-8e5d-4a45-9c93-b7b3428dd9f4"="http://thredds.oreme.org:8080/geonetwork/srv/fre/catalog.search#/metadata/couverture_urbaine_villes_moheli_comores",
"https://www.zotero.org/groups/303882/commission_ocean_indien/items/collectionKey/VWE2KPMW/itemKey/FBNNCWFP/q/Djibouti.json"="https://www.zotero.org/groups/303882/commission_ocean_indien/items/collectionKey/VWE2KPMW/itemKey/FBNNCWFP",
"https://www.zotero.org/groups/303882/commission_ocean_indien/items/itemKey/2XW6QNHJ/q/climatique"="https://www.zotero.org/groups/303882/commission_ocean_indien/items/itemKey/2XW6QNHJ",
"https://www.zotero.org/groups/commission_ocean_indien/items/itemKey/FBNNCWFP/q/Djibouti"="https://www.zotero.org/groups/commission_ocean_indien/items/itemKey/FBNNCWFP"
# http://thredds.oreme.org:8080/geonetwork/srv/fre/catalog.search#/metadata/couverture_urbaine_villes_moheli_comores
# "http://moi.govmu.org/mesa/"="",
# "http://moi.govmu.org/mesa/images/observations/857.JPG"="",
# "http://data.unep-wcmc.org/datasets/1"="",
# "http://data.unep-wcmc.org/pdfs/1/WCMC-008-CoralReefs2010-ver1.3.pdf?1434713557"
)
if (!is.null(new_url) && !grepl("OLD metadata",prefix)){
# cat("URL à changer \n")
if(grepl("www.zotero.org",new_url)){
cat(new_url)
# impossible d'ouvrir le fichier 'FBNNCWFP/q/Djibouti.json' : Aucun fichier ou dossier de ce type
json_file_name2 <- paste0(sub(".*itemKey/","",new_url),".json")
url_zotero <-paste0("https://api.zotero.org/groups/303882/items/", sub(".*itemKey/","",new_url),"?v=3")
json_file_name <- paste0(geonetwork_metadata$uuid[i],".json")
cat("ici ? \n")
this_wd<-getwd()
setwd("/tmp/OGC_19139_xml_files")
resp <-NA
if (!file.exists(json_file_name)){
resp<-httr::GET(url_zotero)
jsonRespParsed<-content(resp,as="parsed")
writeLines(content(resp, "text"), json_file_name)
writeLines(content(resp, "text"), json_file_name2)
cat(json_file_name2)
}else{
jsonRespParsed<-fromJSON(json_file_name)
}
if (file.exists(json_file_name) && !file.exists(json_file_name2)){
system(command = paste("cp", json_file_name, json_file_name2,sep=" "))
}
setwd(this_wd)
title_zotero <- gsub(":",",",jsonRespParsed$data$title)
type_zotero <- paste0(toupper(substr(jsonRespParsed$data$itemType, 1, 1)), substr(jsonRespParsed$data$itemType, 2, nchar(jsonRespParsed$data$itemType)))
new_line <- paste0("http:",paste0(title_zotero," (",type_zotero,")"),"[Lien vers la référence Zotero d'un document qui mentionne la donnée]@",new_url)
} else if(grepl("http://thredds.oreme.org:8080/geonetwork/srv/fre/catalog.search#/metadata/",new_url)){
new_line <- paste0("http:Related Metadata [related metadata link]@",new_url)
}
} else if (grepl("zotero",url)){# a verifier
cat(url)
json_file_name2 <- paste0(sub(".*itemKey/","",url),".json")
url_zotero <-paste0("https://api.zotero.org/groups/303882/items/", sub(".*itemKey/","",url),"?v=3")
json_file_name <- paste0(geonetwork_metadata$uuid[i],".json")
cat(" \n ici ? \n")
this_wd<-getwd()
setwd("/tmp/OGC_19139_xml_files")
resp <-NA
if (!file.exists(json_file_name)){
resp<-httr::GET(url_zotero)
jsonRespParsed<-content(resp,as="parsed")
writeLines(content(resp, "text"), json_file_name)
writeLines(content(resp, "text"), json_file_name2)
cat(json_file_name2)
}else{
jsonRespParsed<-fromJSON(json_file_name)
}
if (file.exists(json_file_name) && !file.exists(json_file_name2)){
system(command = paste("cp", json_file_name, json_file_name2,sep=" "))
}
setwd(this_wd)
cat(" \n ou là ? \n")
title_zotero <- gsub(":",",",jsonRespParsed$data$title)
type_zotero <- paste0(toupper(substr(jsonRespParsed$data$itemType, 1, 1)), substr(jsonRespParsed$data$itemType, 2, nchar(jsonRespParsed$data$itemType)))
new_line <- paste0("http:",paste0(title_zotero," (",type_zotero,")"),"[Lien vers la référence Zotero d'un document qui mentionne la donnée]@",url)
} else {# || grepl("OLD metadata",prefix)
# cat("URL conservé \n")
cat(paste0(" \n Pas touché : \n ", url, "\n"))
new_line <- line
}
}
new_Relation <- paste0(new_Relation,"\n",new_line)
}
Relation <-paste0(sub("\n", "",new_Relation),logo,";")
Relation <-gsub("\n", ";\n",Relation)
##########################################################################################################################
##########################################################################################################################
bbox <- str_split(geonetwork_metadata$geoBox[i],pattern = "###")
xmin <- bbox[[1]][1]
xmax <- bbox[[1]][2]
ymin <- bbox[[1]][3]
ymax <- bbox[[1]][4]
SpatialCoverage <-paste0("SRID=4326;POLYGON((",xmin," ",ymin,",",xmin," ",ymax,",",xmax," ",ymax,",",xmax," ",ymin,",",xmin," ",ymin,"))")
if(SpatialCoverage=="SRID=4326;POLYGON((,,,,))" || SpatialCoverage== "SRID=4326;POLYGON(( , , , , ))" || SpatialCoverage== "SRID=4326;POLYGON((NA NA,NA NA,NA NA,NA NA,NA NA))"){
SpatialCoverage <-"SRID=4326;POLYGON((-180 -90,-180 90,180 90,180 -90,-180 -90))"
}
##########################################################################################################################
##########################################################################################################################
if(!is.na(geonetwork_metadata$temporalExtent[i])){
TemporalCoverage <- paste0(substr(geonetwork_metadata$temporalExtent[i], 1, nchar(geonetwork_metadata$temporalExtent[i])/2),"/",substr(geonetwork_metadata$temporalExtent[i], 1+nchar(geonetwork_metadata$temporalExtent[i])/2, nchar(geonetwork_metadata$temporalExtent[i])))
} else {TemporalCoverage <- ""}
##########################################################################################################################
##########################################################################################################################
Rights <- "use:to be done"
##########################################################################################################################
##########################################################################################################################
provenance <-NA
if(length(OGC_19139$dataQualityInfo)>0){
provenance=gsub("\n"," ",gsub(":",",",OGC_19139$dataQualityInfo[[1]]$lineage$statement[1]))
}
if(!is.na(provenance)){
Provenance <- paste0("statement:",provenance)
}else{
Provenance <- "statement:to be done"
}
Provenance
##########################################################################################################################
##########################################################################################################################
# Data <- "source:test@http://mdst-macroes.ird.fr/tmp/BET_YFT_SKJ.svg;\ntype:other;"
Data <- ""
##########################################################################################################################
# Geoflow entities Data Structure => Identifier Title Description Subject Creator Date Type Language SpatialCoverage TemporalCoverage Relation Rights Provenance Data
newRow <- data.frame(Projet=Projet,
Identifier=Identifier,
Title=Title,
Description=Description,
Subject=Subject,
Creator=Creator,
Date=Date,
Type=Type,
Language=Language,
# Format=Format,
SpatialCoverage=SpatialCoverage,
TemporalCoverage=TemporalCoverage,
Relation=Relation,
Rights=Rights,
Provenance=Provenance,
Data=Data
)
geoflow_metadata <- rbind(geoflow_metadata,newRow)
}
# file_name <- paste0("geoflow_metadata_",project_name,".csv")
file_name <- paste0("geoflow_metadata_all_projects",".csv")
write.csv(geoflow_metadata,file = file_name,row.names = F)
nrow(geoflow_metadata)