From b5cbb20d473e008584c79b569dd782894b1dc81b Mon Sep 17 00:00:00 2001 From: jordandouglas <31677293+jordandouglas@users.noreply.github.com> Date: Wed, 26 Jul 2023 09:21:49 +1200 Subject: [PATCH] Fix starting tree guidelines --- README.md | 7 +++++++ 1 file changed, 7 insertions(+) diff --git a/README.md b/README.md index a31260d..ff4e0c8 100644 --- a/README.md +++ b/README.md @@ -74,6 +74,13 @@ Please note that these xml files are dependent on the 'FastRelaxedClockLogNormal +## Fixing the tree topology + +To fix the starting tree, please refer to the [Fix starting tree](https://www.beast2.org/fix-starting-tree/) blog post. + +If the optimised relaxed clock is also being used, then this operator also needs to be switched off: `id="ORCAdaptableOperatorSampler_NER.c..."`. This operator performs a narrow exchange topology operation, while also accounting for branch rates. + + ## Citation Jordan Douglas, Rong Zhang,Remco Bouckaert.