Makefile

# 
# adjust this according to your configuration
#
NL_VERSION=6.3.0

# example generator
GENEX_CLASS = GenerateExample
GENCF_CLASS = GenerateConfigurations

# calculation of mean living cells
CALCMEAN_CLASS = CalculateMeanLiving
CALCMEAN_FILE = living_data_250steps_200runs.csv 

# NetLog location
CLASS_PATH = ${HOME}/Local/NetLogo/${NL_VERSION}/lib/app/netlogo-${NL_VERSION}.jar

build:
	javac -cp ${CLASS_PATH} ${GENEX_CLASS}.java
	javac -cp ${CLASS_PATH} ${GENCF_CLASS}.java
	javac -cp ${CLASS_PATH} ${CALCMEAN_CLASS}.java

realizations:
	ln -sf run.sh random_realizations.sh 
	ln -sf run.sh deterministic_realizations.sh
	bash random_realizations.sh
	bash deterministic_realizations.sh

genex:
	parallel java -cp .:${CLASS_PATH} ${GENEX_CLASS} 64 50 {1} {2} 2 {3} {4} ::: true false ::: true false ::: 0.0 0.25 0.5 0.75 1.0 ::: `seq 4 8`

gencf:
	parallel java -cp .:${CLASS_PATH} ${GENCF_CLASS} 32 50 {1} {2} 2 {3} {4} ::: true ::: true false ::: 0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 ::: `seq 4 9`

calcmean:
	cp living_data.csv.tpl ${CALCMEAN_FILE}
	parallel java -cp .:${CLASS_PATH} ${CALCMEAN_CLASS} 64 50 {1} {2} 2 {3} {4} >> ${CALCMEAN_FILE} ::: true false ::: true false ::: `seq 0 0.05 1` ::: `seq 4 9`