-
Notifications
You must be signed in to change notification settings - Fork 2
/
CMakeLists.txt
72 lines (56 loc) · 2.8 KB
/
CMakeLists.txt
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
include(CheckLanguage)
set(CMAKE_VERBOSE_MAKEFILE on)
cmake_minimum_required(VERSION 3.18)
if (NOT SKBUILD)
message(WARNING "\
This CMake file is meant to be executed using 'scikit-build'. Running
it directly will almost certainly not produce the desired result. If
you are a user trying to install this package, please use the command
below, which will install all necessary build dependencies, compile
the package in an isolated environment, and then install it.
=====================================================================
$ pip install .
=====================================================================
If you are a software developer, and this is your own package, then
it is usually much more efficient to install the build dependencies
in your environment once and use the following command that avoids
a costly creation of a new virtual environment at every compilation:
=====================================================================
$ pip install nanobind scikit-build-core[pyproject]
$ pip install --no-build-isolation -ve .
=====================================================================
You may optionally add -Ceditable.rebuild=true to auto-rebuild when
the package is imported. Otherwise, you need to re-run the above
after editing C++ files.")
endif()
project(${SKBUILD_PROJECT_NAME} LANGUAGES CXX)
find_package(Python 3.8 COMPONENTS Interpreter Development.Module REQUIRED)
set(CMAKE_CXX_STANDARD 17)
set(CMAKE_CXX_STANDARD_REQUIRED True)
if (NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)
set(CMAKE_BUILD_TYPE Release CACHE STRING "Choose the type of build." FORCE)
set_property(CACHE CMAKE_BUILD_TYPE PROPERTY STRINGS "Debug" "Release" "MinSizeRel" "RelWithDebInfo")
endif()
execute_process(
COMMAND "${Python_EXECUTABLE}" -m nanobind --cmake_dir
OUTPUT_STRIP_TRAILING_WHITESPACE OUTPUT_VARIABLE nanobind_ROOT)
find_package(nanobind CONFIG REQUIRED)
nanobind_add_module(
antpack_cpp_ext
# Target the stable ABI for Python 3.12+, which reduces
# the number of binary wheels that must be built. This
# does nothing on older Python versions
STABLE_ABI
NB_STATIC
src/antpack/cpp_src/ant_ext.cpp
src/antpack/cpp_src/annotator_classes/ig_aligner.cpp
src/antpack/cpp_src/annotator_classes/annotator_base_class.cpp
src/antpack/cpp_src/annotator_classes/single_chain_annotator.cpp
src/antpack/cpp_src/annotator_classes/paired_chain_annotator.cpp
src/antpack/cpp_src/vj_assignment/vj_match_counter.cpp
src/antpack/cpp_src/utilities/utilities.cpp
src/antpack/cpp_src/humanness_calcs/responsibility_calcs.cpp
src/antpack/cpp_src/annotator_classes/cterm_finder.cpp
src/antpack/cpp_src/utilities/consensus_file_utilities.cpp
)
install(TARGETS antpack_cpp_ext LIBRARY DESTINATION ${SKBUILD_PROJECT_NAME})