DESCRIPTION

Package: lilikoi
Title: Metabolomics Personalized Pathway Analysis Tool
Version: 0.1.0
Authors@R: c(
 person("Fadhl", "Alakwaa", email = "falakwaa@hawaii.edu", role = c("aut", "cre")),
 person("Sijia", "Huang", email = "scarlettcanny@gmail.com", role = c( "aut")))
Description: Computes the pathway deregulation score for a given set of metabolites, selects the pathways with the highest mutual information and then uses them to build a classifier. F. Alakwaa, S. Huang, and L. Garmire (2018) <doi:10.1101/283408>.
Imports:
	caret,
  corrplot,
  devtools,
  dplyr,
  e1071,
  gbm,
  ggplot2,
  glmnet,
  hash,
  Hmisc,
  infotheo,
  Matrix,
  pamr,
  R.oo,
  princurve,
  pROC,
  randomForest,
  reshape2,
  RWeka,
  stringr
Depends: R (>= 3.4.0)
License: GPL-2
Encoding: UTF-8
LazyData: true
URL: https://github.com/lanagarmire/lilikoi
BugReports: https://github.com/lanagarmire/lilikoi/issues
RoxygenNote: 6.0.1.9000
Suggests:
    testthat