From 6769d0039fd750e20e8ce2ad4594738889d87d95 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" Date: Tue, 17 Sep 2024 13:43:17 +0000 Subject: [PATCH] Render bookdown --- docs/404.html | 8 ++++---- docs/About.md | 2 +- docs/about-the-authors.html | 10 +++++----- docs/index.html | 10 +++++----- docs/index.md | 2 +- docs/organizer-guide.html | 8 ++++---- docs/polygenic-risk-score-analysis.html | 8 ++++---- docs/references.html | 8 ++++---- docs/scalable-ml-and-data-science.html | 8 ++++---- docs/search_index.json | 2 +- docs/wrap-a-tool-with-wdl.html | 8 ++++---- 11 files changed, 37 insertions(+), 37 deletions(-) diff --git a/docs/404.html b/docs/404.html index faf07d8..7344bb5 100644 --- a/docs/404.html +++ b/docs/404.html @@ -22,7 +22,7 @@ - + @@ -52,14 +52,14 @@ - - + + diff --git a/docs/About.md b/docs/About.md index e83e257..b2678c6 100644 --- a/docs/About.md +++ b/docs/About.md @@ -53,7 +53,7 @@ These credits are based on our [course contributors table guidelines](https://gi ## collate en_US.UTF-8 ## ctype en_US.UTF-8 ## tz Etc/UTC -## date 2024-08-30 +## date 2024-09-17 ## pandoc 3.1.1 @ /usr/local/bin/ (via rmarkdown) ## ## ─ Packages ─────────────────────────────────────────────────────────────────── diff --git a/docs/about-the-authors.html b/docs/about-the-authors.html index b5794c9..822e7af 100644 --- a/docs/about-the-authors.html +++ b/docs/about-the-authors.html @@ -22,7 +22,7 @@ - + @@ -52,14 +52,14 @@ - - + + @@ -272,7 +272,7 @@

About the Authors + @@ -52,14 +52,14 @@ - - + + @@ -131,7 +131,7 @@

What are CoFests!?

diff --git a/docs/index.md b/docs/index.md index b469895..7576672 100644 --- a/docs/index.md +++ b/docs/index.md @@ -1,6 +1,6 @@ --- title: "AnVIL CoFests! 2024" -date: "August 30, 2024" +date: "September 17, 2024" site: bookdown::bookdown_site documentclass: book bibliography: book.bib diff --git a/docs/organizer-guide.html b/docs/organizer-guide.html index 4d8f690..a76d3fe 100644 --- a/docs/organizer-guide.html +++ b/docs/organizer-guide.html @@ -22,7 +22,7 @@ - + @@ -52,14 +52,14 @@ - - + + diff --git a/docs/polygenic-risk-score-analysis.html b/docs/polygenic-risk-score-analysis.html index 0da5004..cc05b70 100644 --- a/docs/polygenic-risk-score-analysis.html +++ b/docs/polygenic-risk-score-analysis.html @@ -22,7 +22,7 @@ - + @@ -52,14 +52,14 @@ - - + + diff --git a/docs/references.html b/docs/references.html index e6ce55f..31d7861 100644 --- a/docs/references.html +++ b/docs/references.html @@ -22,7 +22,7 @@ - + @@ -52,14 +52,14 @@ - - + + diff --git a/docs/scalable-ml-and-data-science.html b/docs/scalable-ml-and-data-science.html index 76d3edb..66f0fe8 100644 --- a/docs/scalable-ml-and-data-science.html +++ b/docs/scalable-ml-and-data-science.html @@ -22,7 +22,7 @@ - + @@ -52,14 +52,14 @@ - - + + diff --git a/docs/search_index.json b/docs/search_index.json index 9a3b54b..3eb3540 100644 --- a/docs/search_index.json +++ b/docs/search_index.json @@ -1 +1 @@ -[["index.html", "AnVIL CoFests! 2024 What are CoFests!? What’s in a name: CollaborationFests! and Hackathons AnVIL Collection", " AnVIL CoFests! 2024 August 30, 2024 What are CoFests!? CollaborationFests!, also known as CoFests! (and sometimes as “hackathons”), are collaborative work events where we expand and improve the AnVIL community and the AnVIL ecosystem. Sometimes these gatherings are focused on AnVIL, and sometimes they are part of larger communities. Modified from https://galaxyproject.org/events/cofests What’s in a name: CollaborationFests! and Hackathons We collaborate. AnVIL collaborative events are emphatically called CollaborationFests! rather than Hackathons. Putting Collaboration in the name emphasizes what the events are about for us, and Fest communicates that they are fun events (which they are). “Hackathon” implies an emphasis on code. CoFests! are about contributing and learning how to contribute to all aspects of AnVIL, including training material, community infrastructure, documentation, unit tests, bug reports, and yes, even code. First and foremost AnVIL CoFests! are about growing the community of future contributors. Idea inspiration from [GCC2024][GCC2018] Reporting inspiration from [BioC2018][BioC2020][BioC2023] AnVIL Collection Please check out our full collection of AnVIL and related resources: https://hutchdatascience.org/AnVIL_Collection/ "],["organizer-guide.html", "Organizer Guide CoFests! Goals Logistics Example Schedule", " Organizer Guide The inaugural AnVIL Community Conference 2024 CoFests! will take place on November 12-13, 2024 in Cold Spring Harbor, NY. This event is a key event for professionals in the genomics community interested in biomedical and genomic cloud computing and takes place immediately before the sixth meeting on Biological Data Science. https://anvilproject.org/events/anvil2024-community-conference CoFests! Goals Build community Develop high interest topics Open science Logistics Parallel tracks, 5+ hours across Nov 12/13 Scientific Lead and Co-Lead ~4-10 participants per topic Example Schedule Problem statement (short demo) Brainstorming Onboarding Work-regroup, work-regroup Report out "],["scalable-ml-and-data-science.html", "Chapter 1 Scalable ML and Data Science", " Chapter 1 Scalable ML and Data Science "],["polygenic-risk-score-analysis.html", "Chapter 2 Polygenic Risk Score Analysis", " Chapter 2 Polygenic Risk Score Analysis "],["wrap-a-tool-with-wdl.html", "Chapter 3 Wrap a Tool with WDL", " Chapter 3 Wrap a Tool with WDL "],["about-the-authors.html", "About the Authors", " About the Authors These credits are based on our course contributors table guidelines.     Credits Names Pedagogy Lead Content Instructor(s) FirstName LastName Lecturer(s) (include chapter name/link in parentheses if only for specific chapters) - make new line if more than one chapter involved Delivered the course in some way - video or audio Content Author(s) (include chapter name/link in parentheses if only for specific chapters) - make new line if more than one chapter involved If any other authors besides lead instructor Content Contributor(s) (include section name/link in parentheses) - make new line if more than one section involved Wrote less than a chapter AnVIL instructions: Katherine Cox, Ava Hoffman, Elizabeth Humphries Content Editor(s)/Reviewer(s) Checked your content Content Director(s) Helped guide the content direction Content Consultants (include chapter name/link in parentheses or word “General”) - make new line if more than one chapter involved Gave high level advice on content AnVIL instructions: Allie Cliffe Acknowledgments Gave small assistance to content but not to the level of consulting Production Content Publisher(s) Helped with publishing platform Content Publishing Reviewer(s) Reviewed overall content and aesthetics on publishing platform Technical Course Publishing Engineer(s) Helped with the code for the technical aspects related to the specific course generation Template Publishing Engineers Candace Savonen, Carrie Wright Publishing Maintenance Engineer Candace Savonen Technical Publishing Stylists Carrie Wright, Candace Savonen Package Developers (ottrpal) John Muschelli, Candace Savonen, Carrie Wright Art and Design Illustrator(s) Created graphics for the course Figure Artist(s) Created figures/plots for course Videographer(s) Filmed videos Videography Editor(s) Edited film Audiographer(s) Recorded audio Audiography Editor(s) Edited audio recordings Funding Funder(s) Institution/individual who funded course including grant number Funding Staff Staff members who help with funding   ## ─ Session info ─────────────────────────────────────────────────────────────── ## setting value ## version R version 4.3.2 (2023-10-31) ## os Ubuntu 22.04.4 LTS ## system x86_64, linux-gnu ## ui X11 ## language (EN) ## collate en_US.UTF-8 ## ctype en_US.UTF-8 ## tz Etc/UTC ## date 2024-08-30 ## pandoc 3.1.1 @ /usr/local/bin/ (via rmarkdown) ## ## ─ Packages ─────────────────────────────────────────────────────────────────── ## package * version date (UTC) lib source ## bookdown 0.39.1 2024-06-11 [1] Github (rstudio/bookdown@f244cf1) ## bslib 0.6.1 2023-11-28 [1] RSPM (R 4.3.0) ## cachem 1.0.8 2023-05-01 [1] RSPM (R 4.3.0) ## cli 3.6.2 2023-12-11 [1] RSPM (R 4.3.0) ## devtools 2.4.5 2022-10-11 [1] RSPM (R 4.3.0) ## digest 0.6.34 2024-01-11 [1] RSPM (R 4.3.0) ## ellipsis 0.3.2 2021-04-29 [1] RSPM (R 4.3.0) ## evaluate 0.23 2023-11-01 [1] RSPM (R 4.3.0) ## fastmap 1.1.1 2023-02-24 [1] RSPM (R 4.3.0) ## fs 1.6.3 2023-07-20 [1] RSPM (R 4.3.0) ## glue 1.7.0 2024-01-09 [1] RSPM (R 4.3.0) ## htmltools 0.5.7 2023-11-03 [1] RSPM (R 4.3.0) ## htmlwidgets 1.6.4 2023-12-06 [1] RSPM (R 4.3.0) ## httpuv 1.6.14 2024-01-26 [1] RSPM (R 4.3.0) ## jquerylib 0.1.4 2021-04-26 [1] RSPM (R 4.3.0) ## jsonlite 1.8.8 2023-12-04 [1] RSPM (R 4.3.0) ## knitr 1.47.3 2024-06-11 [1] Github (yihui/knitr@e1edd34) ## later 1.3.2 2023-12-06 [1] RSPM (R 4.3.0) ## lifecycle 1.0.4 2023-11-07 [1] RSPM (R 4.3.0) ## magrittr 2.0.3 2022-03-30 [1] RSPM (R 4.3.0) ## memoise 2.0.1 2021-11-26 [1] RSPM (R 4.3.0) ## mime 0.12 2021-09-28 [1] RSPM (R 4.3.0) ## miniUI 0.1.1.1 2018-05-18 [1] RSPM (R 4.3.0) ## pkgbuild 1.4.3 2023-12-10 [1] RSPM (R 4.3.0) ## pkgload 1.3.4 2024-01-16 [1] RSPM (R 4.3.0) ## profvis 0.3.8 2023-05-02 [1] RSPM (R 4.3.0) ## promises 1.2.1 2023-08-10 [1] RSPM (R 4.3.0) ## purrr 1.0.2 2023-08-10 [1] RSPM (R 4.3.0) ## R6 2.5.1 2021-08-19 [1] RSPM (R 4.3.0) ## Rcpp 1.0.12 2024-01-09 [1] RSPM (R 4.3.0) ## remotes 2.4.2.1 2023-07-18 [1] RSPM (R 4.3.0) ## rlang 1.1.4 2024-06-04 [1] CRAN (R 4.3.2) ## rmarkdown 2.27.1 2024-06-11 [1] Github (rstudio/rmarkdown@e1c93a9) ## sass 0.4.8 2023-12-06 [1] RSPM (R 4.3.0) ## sessioninfo 1.2.2 2021-12-06 [1] RSPM (R 4.3.0) ## shiny 1.8.0 2023-11-17 [1] RSPM (R 4.3.0) ## stringi 1.8.3 2023-12-11 [1] RSPM (R 4.3.0) ## stringr 1.5.1 2023-11-14 [1] RSPM (R 4.3.0) ## urlchecker 1.0.1 2021-11-30 [1] RSPM (R 4.3.0) ## usethis 2.2.3 2024-02-19 [1] RSPM (R 4.3.0) ## vctrs 0.6.5 2023-12-01 [1] RSPM (R 4.3.0) ## xfun 0.44.4 2024-06-11 [1] Github (yihui/xfun@9da62cc) ## xtable 1.8-4 2019-04-21 [1] RSPM (R 4.3.0) ## yaml 2.3.8 2023-12-11 [1] RSPM (R 4.3.0) ## ## [1] /usr/local/lib/R/site-library ## [2] /usr/local/lib/R/library ## ## ────────────────────────────────────────────────────────────────────────────── "],["references.html", "Chapter 4 References", " Chapter 4 References "],["404.html", "Page not found", " Page not found The page you requested cannot be found (perhaps it was moved or renamed). 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You may want to try searching to find the page's new location, or use the table of contents to find the page you are looking for. "]] diff --git a/docs/wrap-a-tool-with-wdl.html b/docs/wrap-a-tool-with-wdl.html index 936dd4e..57e540a 100644 --- a/docs/wrap-a-tool-with-wdl.html +++ b/docs/wrap-a-tool-with-wdl.html @@ -22,7 +22,7 @@ - + @@ -52,14 +52,14 @@ - - + +