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diff --git a/docs/404.html b/docs/404.html
@@ -22,7 +22,7 @@
 
 
 
-<meta name="date" content="2024-09-18" />
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@@ -94,7 +94,7 @@
 <li class="part"><span><b>Topics</b></span></li>
 <li class="chapter" data-level="1" data-path="scalable-ml-and-data-science.html"><a href="scalable-ml-and-data-science.html"><i class="fa fa-check"></i><b>1</b> Scalable ML and Data Science</a></li>
 <li class="chapter" data-level="2" data-path="polygenic-risk-score-analysis.html"><a href="polygenic-risk-score-analysis.html"><i class="fa fa-check"></i><b>2</b> Polygenic Risk Score Analysis</a></li>
-<li class="chapter" data-level="3" data-path="wrap-a-tool-with-wdl.html"><a href="wrap-a-tool-with-wdl.html"><i class="fa fa-check"></i><b>3</b> Wrap a Tool with WDL</a></li>
+<li class="chapter" data-level="3" data-path="how-to-run-your-tool-in-anvil-with-wdl.html"><a href="how-to-run-your-tool-in-anvil-with-wdl.html"><i class="fa fa-check"></i><b>3</b> How to Run Your Tool in AnVIL with WDL</a></li>
 <li class="chapter" data-level="" data-path="about-the-authors.html"><a href="about-the-authors.html"><i class="fa fa-check"></i>About the Authors</a></li>
 <li class="chapter" data-level="4" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>4</b> References</a></li>
 <li class="divider"></li>

diff --git a/docs/About.md b/docs/About.md
@@ -53,7 +53,7 @@ These credits are based on our [course contributors table guidelines](https://gi
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diff --git a/docs/about-the-authors.html b/docs/about-the-authors.html
@@ -22,14 +22,14 @@
 
 
 
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@@ -94,7 +94,7 @@
 <li class="part"><span><b>Topics</b></span></li>
 <li class="chapter" data-level="1" data-path="scalable-ml-and-data-science.html"><a href="scalable-ml-and-data-science.html"><i class="fa fa-check"></i><b>1</b> Scalable ML and Data Science</a></li>
 <li class="chapter" data-level="2" data-path="polygenic-risk-score-analysis.html"><a href="polygenic-risk-score-analysis.html"><i class="fa fa-check"></i><b>2</b> Polygenic Risk Score Analysis</a></li>
-<li class="chapter" data-level="3" data-path="wrap-a-tool-with-wdl.html"><a href="wrap-a-tool-with-wdl.html"><i class="fa fa-check"></i><b>3</b> Wrap a Tool with WDL</a></li>
+<li class="chapter" data-level="3" data-path="how-to-run-your-tool-in-anvil-with-wdl.html"><a href="how-to-run-your-tool-in-anvil-with-wdl.html"><i class="fa fa-check"></i><b>3</b> How to Run Your Tool in AnVIL with WDL</a></li>
 <li class="chapter" data-level="" data-path="about-the-authors.html"><a href="about-the-authors.html"><i class="fa fa-check"></i>About the Authors</a></li>
 <li class="chapter" data-level="4" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>4</b> References</a></li>
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@@ -275,7 +275,7 @@ <h1>About the Authors<a href="about-the-authors.html#about-the-authors" class="a
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-##  date     2024-09-18
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@@ -354,7 +354,7 @@ <h1>About the Authors<a href="about-the-authors.html#about-the-authors" class="a
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diff --git a/docs/how-to-run-your-tool-in-anvil-with-wdl.html b/docs/how-to-run-your-tool-in-anvil-with-wdl.html
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+
+<li class="divider"></li>
+<li class="chapter" data-level="" data-path="index.html"><a href="index.html"><i class="fa fa-check"></i>What are CoFests!?</a></li>
+<li class="chapter" data-level="" data-path="organizer-guide.html"><a href="organizer-guide.html"><i class="fa fa-check"></i>Organizer Guide</a>
+<ul>
+<li class="chapter" data-level="" data-path="organizer-guide.html"><a href="organizer-guide.html#final-product-report-out"><i class="fa fa-check"></i>Final Product / Report Out</a></li>
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+<li class="part"><span><b>Topics</b></span></li>
+<li class="chapter" data-level="1" data-path="scalable-ml-and-data-science.html"><a href="scalable-ml-and-data-science.html"><i class="fa fa-check"></i><b>1</b> Scalable ML and Data Science</a></li>
+<li class="chapter" data-level="2" data-path="polygenic-risk-score-analysis.html"><a href="polygenic-risk-score-analysis.html"><i class="fa fa-check"></i><b>2</b> Polygenic Risk Score Analysis</a></li>
+<li class="chapter" data-level="3" data-path="how-to-run-your-tool-in-anvil-with-wdl.html"><a href="how-to-run-your-tool-in-anvil-with-wdl.html"><i class="fa fa-check"></i><b>3</b> How to Run Your Tool in AnVIL with WDL</a></li>
+<li class="chapter" data-level="" data-path="about-the-authors.html"><a href="about-the-authors.html"><i class="fa fa-check"></i>About the Authors</a></li>
+<li class="chapter" data-level="4" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>4</b> References</a></li>
+<li class="divider"></li>
+<p style="text-align:center;"> <a href="https://github.com/jhudsl/OTTR_Template" target="blank" > This content was published with</a> <a href="https://bookdown.org/" target="blank"> bookdown by: </a> </p>
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+<div id="how-to-run-your-tool-in-anvil-with-wdl" class="section level1 hasAnchor" number="3">
+<h1><span class="header-section-number">Chapter 3</span> How to Run Your Tool in AnVIL with WDL<a href="how-to-run-your-tool-in-anvil-with-wdl.html#how-to-run-your-tool-in-anvil-with-wdl" class="anchor-section" aria-label="Anchor link to header"></a></h1>
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diff --git a/docs/index.html b/docs/index.html
@@ -22,7 +22,7 @@
 
 
 
-<meta name="date" content="2024-09-18" />
+<meta name="date" content="2024-09-24" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1" />
   <meta name="apple-mobile-web-app-capable" content="yes" />
@@ -94,7 +94,7 @@
 <li class="part"><span><b>Topics</b></span></li>
 <li class="chapter" data-level="1" data-path="scalable-ml-and-data-science.html"><a href="scalable-ml-and-data-science.html"><i class="fa fa-check"></i><b>1</b> Scalable ML and Data Science</a></li>
 <li class="chapter" data-level="2" data-path="polygenic-risk-score-analysis.html"><a href="polygenic-risk-score-analysis.html"><i class="fa fa-check"></i><b>2</b> Polygenic Risk Score Analysis</a></li>
-<li class="chapter" data-level="3" data-path="wrap-a-tool-with-wdl.html"><a href="wrap-a-tool-with-wdl.html"><i class="fa fa-check"></i><b>3</b> Wrap a Tool with WDL</a></li>
+<li class="chapter" data-level="3" data-path="how-to-run-your-tool-in-anvil-with-wdl.html"><a href="how-to-run-your-tool-in-anvil-with-wdl.html"><i class="fa fa-check"></i><b>3</b> How to Run Your Tool in AnVIL with WDL</a></li>
 <li class="chapter" data-level="" data-path="about-the-authors.html"><a href="about-the-authors.html"><i class="fa fa-check"></i>About the Authors</a></li>
 <li class="chapter" data-level="4" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>4</b> References</a></li>
 <li class="divider"></li>
@@ -134,7 +134,7 @@ <h1>
 </div>
 <div id="header">
 <h1 class="title">AnVIL CoFests! 2024</h1>
-<p class="date"><em>September 18, 2024</em></p>
+<p class="date"><em>September 24, 2024</em></p>
 </div>
 <div id="what-are-cofests" class="section level1 unnumbered hasAnchor">
 <h1>What are CoFests!?<a href="index.html#what-are-cofests" class="anchor-section" aria-label="Anchor link to header"></a></h1>

diff --git a/docs/index.md b/docs/index.md
@@ -1,6 +1,6 @@
 ---
 title: "AnVIL CoFests! 2024"
-date: "September 18, 2024"
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 site: bookdown::bookdown_site
 documentclass: book
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diff --git a/docs/organizer-guide.html b/docs/organizer-guide.html
@@ -22,7 +22,7 @@
 
 
 
-<meta name="date" content="2024-09-18" />
+<meta name="date" content="2024-09-24" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1" />
   <meta name="apple-mobile-web-app-capable" content="yes" />
@@ -94,7 +94,7 @@
 <li class="part"><span><b>Topics</b></span></li>
 <li class="chapter" data-level="1" data-path="scalable-ml-and-data-science.html"><a href="scalable-ml-and-data-science.html"><i class="fa fa-check"></i><b>1</b> Scalable ML and Data Science</a></li>
 <li class="chapter" data-level="2" data-path="polygenic-risk-score-analysis.html"><a href="polygenic-risk-score-analysis.html"><i class="fa fa-check"></i><b>2</b> Polygenic Risk Score Analysis</a></li>
-<li class="chapter" data-level="3" data-path="wrap-a-tool-with-wdl.html"><a href="wrap-a-tool-with-wdl.html"><i class="fa fa-check"></i><b>3</b> Wrap a Tool with WDL</a></li>
+<li class="chapter" data-level="3" data-path="how-to-run-your-tool-in-anvil-with-wdl.html"><a href="how-to-run-your-tool-in-anvil-with-wdl.html"><i class="fa fa-check"></i><b>3</b> How to Run Your Tool in AnVIL with WDL</a></li>
 <li class="chapter" data-level="" data-path="about-the-authors.html"><a href="about-the-authors.html"><i class="fa fa-check"></i>About the Authors</a></li>
 <li class="chapter" data-level="4" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>4</b> References</a></li>
 <li class="divider"></li>

diff --git a/docs/polygenic-risk-score-analysis.html b/docs/polygenic-risk-score-analysis.html
@@ -22,15 +22,15 @@
 
 
 
-<meta name="date" content="2024-09-18" />
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   <link rel="shortcut icon" href="assets/AnVIL_style/anvil_favicon.ico" type="image/x-icon" />
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@@ -94,7 +94,7 @@
 <li class="part"><span><b>Topics</b></span></li>
 <li class="chapter" data-level="1" data-path="scalable-ml-and-data-science.html"><a href="scalable-ml-and-data-science.html"><i class="fa fa-check"></i><b>1</b> Scalable ML and Data Science</a></li>
 <li class="chapter" data-level="2" data-path="polygenic-risk-score-analysis.html"><a href="polygenic-risk-score-analysis.html"><i class="fa fa-check"></i><b>2</b> Polygenic Risk Score Analysis</a></li>
-<li class="chapter" data-level="3" data-path="wrap-a-tool-with-wdl.html"><a href="wrap-a-tool-with-wdl.html"><i class="fa fa-check"></i><b>3</b> Wrap a Tool with WDL</a></li>
+<li class="chapter" data-level="3" data-path="how-to-run-your-tool-in-anvil-with-wdl.html"><a href="how-to-run-your-tool-in-anvil-with-wdl.html"><i class="fa fa-check"></i><b>3</b> How to Run Your Tool in AnVIL with WDL</a></li>
 <li class="chapter" data-level="" data-path="about-the-authors.html"><a href="about-the-authors.html"><i class="fa fa-check"></i>About the Authors</a></li>
 <li class="chapter" data-level="4" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>4</b> References</a></li>
 <li class="divider"></li>
@@ -150,7 +150,7 @@ <h1><span class="header-section-number">Chapter 2</span> Polygenic Risk Score An
         </div>
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 <a href="scalable-ml-and-data-science.html" class="navigation navigation-prev " aria-label="Previous page"><i class="fa fa-angle-left"></i></a>
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     </div>
   </div>
 <script src="libs/gitbook-2.6.7/js/app.min.js"></script>

diff --git a/docs/reference-keys.txt b/docs/reference-keys.txt
@@ -1,4 +1,4 @@
 scalable-ml-and-data-science
 polygenic-risk-score-analysis
-wrap-a-tool-with-wdl
+how-to-run-your-tool-in-anvil-with-wdl
 references