From 9f12d99ac23ecc0530381ab3af1c7fb767eae8a3 Mon Sep 17 00:00:00 2001 From: Kate Isaac <41767733+kweav@users.noreply.github.com> Date: Thu, 12 Sep 2024 17:59:28 -0400 Subject: [PATCH 01/16] try to add some info --- organizer-guide.Rmd | 54 +++++++++++++++++++++++++++++++++++---------- 1 file changed, 42 insertions(+), 12 deletions(-) diff --git a/organizer-guide.Rmd b/organizer-guide.Rmd index 6f5e8c4..a3453d0 100644 --- a/organizer-guide.Rmd +++ b/organizer-guide.Rmd @@ -7,20 +7,50 @@ This event is a key event for professionals in the genomics community interested ## CoFests! Goals {- .unlisted} -- Build community -- Develop high interest topics -- Open science +- Build community (and be inclusive for newcomers) +- Contribute to [open science](https://en.wikipedia.org/wiki/Open_science) +- Report out a final product that accomplishes one of the following for a topic + - Makes useful forward progress + - Identifies opportunities and boundaries or limitations + +The final product of CoFests doesn't need to be code! These Collaboration Fests can support story-boarding future work or development of documentation or training materials. If it's something that will help the community and make progress on an AnVIL associated topic and there's sufficient interest, the idea is game! [As Galaxy phrased it for their CoFests:](https://galaxyproject.org/events/gcc2023/cofest/#goals) + +> [The goal of collaboration fests is to expand the ecosystem] Not just the code, but the whole ecosystem. That includes training, tools, best practice workflows, documentation, test cases, translations, infrastructure, and yes, even code. + +Prior to the CoFests, the scientific and AnVIL co-leads will work together to enumerate some ideas for final products and post them publicly in this book. ## Logistics {- .unlisted} -- Parallel tracks, 5+ hours across Nov 12/13 -- Scientific Lead and Co-Lead -- ~4-10 participants per topic +- 3 Parallel tracks, 5+ hours across Nov 12/13 + - Scalable Machine Learning and Data Science + - Polygenic Risk Score Analysis + - Wrap a Tool (+ Intro AnVIL/WDL) +- Scientific Lead and AnVIL Co-Lead for support +- We expect perhaps 4-10 participants per track + +## Example Schedule for a Track {- .unlisted} + +- First Day (2.5 hrs scheduled): + - Problem statement (perhaps with a short demo) by scientific lead + + This part of the session will provide background info on the track's overall topic and may include a brief summary of the pre-worked ideas. Perhaps 20-30 minutes? + + - Brainstorming + + What project will the track tackle? This should be quicker then the problem statement, focusing on understanding the participant backgrounds and skills and matching those with track ideas and actionable tasks to accomplish the goal. + + - Onboarding by AnVIL co-lead + + Handle billing accounts and other logistics necessary to accomplish the work. + + - Work-regroup, work-regroup + + Probably half an hour to an hour of formal work time left on this first day before dinner. Groups may choose to work together, informally after dinner. + +- Second Day (3 hrs scheduled): + - Work-regroup, work-regroup + - Construct a "report out" -## Example Schedule {- .unlisted} + The report out may be a Google doc, Google slides, a GitHub repo, [a website](https://github.com/jhudsl/OTTR_Template_Website), an [OTTR book](https://github.com/jhudsl/OTTR_Template), etc. -- Problem statement (short demo) -- Brainstorming -- Onboarding -- Work-regroup, work-regroup -- Report out +- Share report out during the CoFest Recap Session! From 33a8691e7f2840dda7e4b188385701d6ea6d556f Mon Sep 17 00:00:00 2001 From: Elizabeth Humphries Date: Mon, 16 Sep 2024 10:42:24 -0400 Subject: [PATCH 02/16] Update organizer-guide.Rmd --- organizer-guide.Rmd | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/organizer-guide.Rmd b/organizer-guide.Rmd index a3453d0..baf82fc 100644 --- a/organizer-guide.Rmd +++ b/organizer-guide.Rmd @@ -7,9 +7,9 @@ This event is a key event for professionals in the genomics community interested ## CoFests! Goals {- .unlisted} -- Build community (and be inclusive for newcomers) +- Build an inclusive community that is supportive of newcomers - Contribute to [open science](https://en.wikipedia.org/wiki/Open_science) -- Report out a final product that accomplishes one of the following for a topic +- Produce a final product that accomplishes one of the following for a topic - Makes useful forward progress - Identifies opportunities and boundaries or limitations From 4b2c0fe15dfb99fe1891aadc1e391756bafbe176 Mon Sep 17 00:00:00 2001 From: Kate Isaac <41767733+kweav@users.noreply.github.com> Date: Mon, 16 Sep 2024 12:17:03 -0400 Subject: [PATCH 03/16] Update organizer-guide.Rmd with amh suggestion MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Co-authored-by: ava 🌱 --- organizer-guide.Rmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/organizer-guide.Rmd b/organizer-guide.Rmd index baf82fc..edfeea4 100644 --- a/organizer-guide.Rmd +++ b/organizer-guide.Rmd @@ -26,7 +26,7 @@ Prior to the CoFests, the scientific and AnVIL co-leads will work together to en - Polygenic Risk Score Analysis - Wrap a Tool (+ Intro AnVIL/WDL) - Scientific Lead and AnVIL Co-Lead for support -- We expect perhaps 4-10 participants per track +- We expect 4-10 participants per track ## Example Schedule for a Track {- .unlisted} From b72dd57111c314e9b1543cc079788a0fb0a64a20 Mon Sep 17 00:00:00 2001 From: Kate Isaac <41767733+kweav@users.noreply.github.com> Date: Mon, 16 Sep 2024 12:17:15 -0400 Subject: [PATCH 04/16] Update organizer-guide.Rmd with amh suggestion MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Co-authored-by: ava 🌱 --- organizer-guide.Rmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/organizer-guide.Rmd b/organizer-guide.Rmd index edfeea4..3ed4094 100644 --- a/organizer-guide.Rmd +++ b/organizer-guide.Rmd @@ -25,7 +25,7 @@ Prior to the CoFests, the scientific and AnVIL co-leads will work together to en - Scalable Machine Learning and Data Science - Polygenic Risk Score Analysis - Wrap a Tool (+ Intro AnVIL/WDL) -- Scientific Lead and AnVIL Co-Lead for support +- Scientific Lead and AnVIL Outreach Co-Lead for support - We expect 4-10 participants per track ## Example Schedule for a Track {- .unlisted} From b92b46b4de77d07440bd3baedf0c7889c654f4b4 Mon Sep 17 00:00:00 2001 From: Kate Isaac <41767733+kweav@users.noreply.github.com> Date: Mon, 16 Sep 2024 12:17:26 -0400 Subject: [PATCH 05/16] Update organizer-guide.Rmd with amh suggestion MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Co-authored-by: ava 🌱 --- organizer-guide.Rmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/organizer-guide.Rmd b/organizer-guide.Rmd index 3ed4094..0f60087 100644 --- a/organizer-guide.Rmd +++ b/organizer-guide.Rmd @@ -31,7 +31,7 @@ Prior to the CoFests, the scientific and AnVIL co-leads will work together to en ## Example Schedule for a Track {- .unlisted} - First Day (2.5 hrs scheduled): - - Problem statement (perhaps with a short demo) by scientific lead + - Problem statement by scientific lead This part of the session will provide background info on the track's overall topic and may include a brief summary of the pre-worked ideas. Perhaps 20-30 minutes? From 889ce5d875394267c0b0fd5a257c7fa48a511597 Mon Sep 17 00:00:00 2001 From: Kate Isaac <41767733+kweav@users.noreply.github.com> Date: Mon, 16 Sep 2024 12:17:37 -0400 Subject: [PATCH 06/16] Update organizer-guide.Rmd with amh suggestion MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Co-authored-by: ava 🌱 --- organizer-guide.Rmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/organizer-guide.Rmd b/organizer-guide.Rmd index 0f60087..476a680 100644 --- a/organizer-guide.Rmd +++ b/organizer-guide.Rmd @@ -33,7 +33,7 @@ Prior to the CoFests, the scientific and AnVIL co-leads will work together to en - First Day (2.5 hrs scheduled): - Problem statement by scientific lead - This part of the session will provide background info on the track's overall topic and may include a brief summary of the pre-worked ideas. Perhaps 20-30 minutes? + This part of the session will provide background info on the track's overall topic and may include a brief summary of the pre-worked ideas. [Suggested time: 20-30 minutes] - Brainstorming From 307748c03d53dafe87b06474dccb744ce068ee8b Mon Sep 17 00:00:00 2001 From: Kate Isaac <41767733+kweav@users.noreply.github.com> Date: Mon, 16 Sep 2024 12:19:45 -0400 Subject: [PATCH 07/16] Update organizer-guide.Rmd with emh suggestion --- organizer-guide.Rmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/organizer-guide.Rmd b/organizer-guide.Rmd index 476a680..76564d6 100644 --- a/organizer-guide.Rmd +++ b/organizer-guide.Rmd @@ -53,4 +53,4 @@ Prior to the CoFests, the scientific and AnVIL co-leads will work together to en The report out may be a Google doc, Google slides, a GitHub repo, [a website](https://github.com/jhudsl/OTTR_Template_Website), an [OTTR book](https://github.com/jhudsl/OTTR_Template), etc. -- Share report out during the CoFest Recap Session! +- Share final report during the CoFest Recap Session! From 372cf398ca2f9439df7b29fbb7630a0c2a795871 Mon Sep 17 00:00:00 2001 From: Kate Isaac <41767733+kweav@users.noreply.github.com> Date: Mon, 16 Sep 2024 13:05:08 -0400 Subject: [PATCH 08/16] try a table --- organizer-guide.Rmd | 33 +++++++++++++-------------------- 1 file changed, 13 insertions(+), 20 deletions(-) diff --git a/organizer-guide.Rmd b/organizer-guide.Rmd index 76564d6..bb89098 100644 --- a/organizer-guide.Rmd +++ b/organizer-guide.Rmd @@ -30,27 +30,20 @@ Prior to the CoFests, the scientific and AnVIL co-leads will work together to en ## Example Schedule for a Track {- .unlisted} -- First Day (2.5 hrs scheduled): - - Problem statement by scientific lead +Day 1 (2.5 hrs scheduled) - This part of the session will provide background info on the track's overall topic and may include a brief summary of the pre-worked ideas. [Suggested time: 20-30 minutes] +| Task | Suggested time | Lead | Description | +|:-------------------------:|:---------------|:----------------------|:------------| +| Problem statement | 20-30 minutes | Scientific Lead | Provide background info on the track's overall topic and may include a brief summary of the pre-worked collaboration ideas.| +| Brainstorming | 15-30 minutes | Both | What project will the track tackle? Focus on understanding the participant backgrounds and skills and matching those with track ideas and actionable tasks to accomplish the goal. | +| Onboarding | 30-60 minutes | AnVIL Outreach Co-lead| Handle billing accounts and other logistics necessary to accomplish the work | +| Work-regroup, work-regroup| 30-60 minutes | -- | Formal collaboration work time left before dinner. (Groups may choose to work together informally after dinner too) | - - Brainstorming +Day 2 (3 hrs scheduled) - What project will the track tackle? This should be quicker then the problem statement, focusing on understanding the participant backgrounds and skills and matching those with track ideas and actionable tasks to accomplish the goal. +| Task | Suggested time | Lead | Description | +|:-------------------------:|:---------------|:----------------------|:------------| +| Work-regroup, work-regroup| 2 - 2.5 hrs | -- | Formal collaboration work time (with a coffee break) | +| Construct a "report out" | 30 - 60 mins | AnVIL Outreach Co-lead| The report out may be a Google doc, Google slides, a GitHub repo, [a website](https://github.com/jhudsl/OTTR_Template_Website), an [OTTR book](https://github.com/jhudsl/OTTR_Template), etc.| - - Onboarding by AnVIL co-lead - - Handle billing accounts and other logistics necessary to accomplish the work. - - - Work-regroup, work-regroup - - Probably half an hour to an hour of formal work time left on this first day before dinner. Groups may choose to work together, informally after dinner. - -- Second Day (3 hrs scheduled): - - Work-regroup, work-regroup - - Construct a "report out" - - The report out may be a Google doc, Google slides, a GitHub repo, [a website](https://github.com/jhudsl/OTTR_Template_Website), an [OTTR book](https://github.com/jhudsl/OTTR_Template), etc. - -- Share final report during the CoFest Recap Session! +End of Day 2: Share final report during the CoFest Recap Session! From 79effac19856def6173426f74e8d24b8dc4eb296 Mon Sep 17 00:00:00 2001 From: Kate Isaac <41767733+kweav@users.noreply.github.com> Date: Mon, 16 Sep 2024 14:22:43 -0400 Subject: [PATCH 09/16] Update organizer-guide.Rmd MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Co-authored-by: ava 🌱 --- organizer-guide.Rmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/organizer-guide.Rmd b/organizer-guide.Rmd index bb89098..eb5ea43 100644 --- a/organizer-guide.Rmd +++ b/organizer-guide.Rmd @@ -39,7 +39,7 @@ Day 1 (2.5 hrs scheduled) | Onboarding | 30-60 minutes | AnVIL Outreach Co-lead| Handle billing accounts and other logistics necessary to accomplish the work | | Work-regroup, work-regroup| 30-60 minutes | -- | Formal collaboration work time left before dinner. (Groups may choose to work together informally after dinner too) | -Day 2 (3 hrs scheduled) +### Day 2 (3 hrs scheduled) | Task | Suggested time | Lead | Description | |:-------------------------:|:---------------|:----------------------|:------------| From 12fd38960a72466cc4e8b45e2ee089932687d4db Mon Sep 17 00:00:00 2001 From: Kate Isaac <41767733+kweav@users.noreply.github.com> Date: Mon, 16 Sep 2024 14:39:43 -0400 Subject: [PATCH 10/16] Update organizer-guide.Rmd MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Co-authored-by: ava 🌱 --- organizer-guide.Rmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/organizer-guide.Rmd b/organizer-guide.Rmd index eb5ea43..eef27cd 100644 --- a/organizer-guide.Rmd +++ b/organizer-guide.Rmd @@ -30,7 +30,7 @@ Prior to the CoFests, the scientific and AnVIL co-leads will work together to en ## Example Schedule for a Track {- .unlisted} -Day 1 (2.5 hrs scheduled) +### Day 1 (2.5 hrs scheduled) | Task | Suggested time | Lead | Description | |:-------------------------:|:---------------|:----------------------|:------------| From 2c24440335d873d2dc3416e8f3e93c99ee66d880 Mon Sep 17 00:00:00 2001 From: Kate Isaac <41767733+kweav@users.noreply.github.com> Date: Mon, 16 Sep 2024 14:46:57 -0400 Subject: [PATCH 11/16] address spell check --- organizer-guide.Rmd | 2 +- resources/dictionary.txt | 14 ++++++++++++++ 2 files changed, 15 insertions(+), 1 deletion(-) diff --git a/organizer-guide.Rmd b/organizer-guide.Rmd index bb89098..ca16ddc 100644 --- a/organizer-guide.Rmd +++ b/organizer-guide.Rmd @@ -44,6 +44,6 @@ Day 2 (3 hrs scheduled) | Task | Suggested time | Lead | Description | |:-------------------------:|:---------------|:----------------------|:------------| | Work-regroup, work-regroup| 2 - 2.5 hrs | -- | Formal collaboration work time (with a coffee break) | -| Construct a "report out" | 30 - 60 mins | AnVIL Outreach Co-lead| The report out may be a Google doc, Google slides, a GitHub repo, [a website](https://github.com/jhudsl/OTTR_Template_Website), an [OTTR book](https://github.com/jhudsl/OTTR_Template), etc.| +| Construct a "report out" | 30 - 60 minutes| AnVIL Outreach Co-lead| The report out may be a Google doc, Google slides, a GitHub repository, [a website](https://github.com/jhudsl/OTTR_Template_Website), an [OTTR book](https://github.com/jhudsl/OTTR_Template), etc.| End of Day 2: Share final report during the CoFest Recap Session! diff --git a/resources/dictionary.txt b/resources/dictionary.txt index 5f9e573..8463dbf 100644 --- a/resources/dictionary.txt +++ b/resources/dictionary.txt @@ -1,11 +1,16 @@ AnVIL +BioDIGS BiocManager bioinformatics +biomedical BIPOC Bloomberg callout Callout +CoFest +CoFests colData +CollaborationFests CoV customizations dex @@ -16,6 +21,9 @@ github Glimma glimmaMDS Gmail +Hackathon +hackathons +Hackathons impactful Inclusivity Jupyter @@ -29,6 +37,8 @@ Onboarding OTTR ottrpal plotMDS +Polygenic +pre precompiled premade preprint @@ -37,8 +47,12 @@ px reproducibility Rmd RStudio +Scalable +seqr timeframe underserved +WDL +wip Workspaces Workspace's www From cda3500a98cba462bfbb85638619d7f649c7d485 Mon Sep 17 00:00:00 2001 From: avahoffman Date: Wed, 18 Sep 2024 10:22:33 -0400 Subject: [PATCH 12/16] Update .gitignore --- .gitignore | 3 +++ 1 file changed, 3 insertions(+) diff --git a/.gitignore b/.gitignore index dc638be..8c9a810 100644 --- a/.gitignore +++ b/.gitignore @@ -8,3 +8,6 @@ spell_check_results.tsv .RData .httr-oauth docker/git_token.txt +.Rproj.user +.Rbuildignore +*.Rproj From 8014a8c22f6604353071a6b1549178bbd057de3d Mon Sep 17 00:00:00 2001 From: avahoffman Date: Wed, 18 Sep 2024 10:51:13 -0400 Subject: [PATCH 13/16] A bit or reorg --- organizer-guide.Rmd | 50 ++++++++++++++++++++++++++------------------- 1 file changed, 29 insertions(+), 21 deletions(-) diff --git a/organizer-guide.Rmd b/organizer-guide.Rmd index d57f153..2009d68 100644 --- a/organizer-guide.Rmd +++ b/organizer-guide.Rmd @@ -13,37 +13,45 @@ This event is a key event for professionals in the genomics community interested - Makes useful forward progress - Identifies opportunities and boundaries or limitations -The final product of CoFests doesn't need to be code! These Collaboration Fests can support story-boarding future work or development of documentation or training materials. If it's something that will help the community and make progress on an AnVIL associated topic and there's sufficient interest, the idea is game! [As Galaxy phrased it for their CoFests:](https://galaxyproject.org/events/gcc2023/cofest/#goals) - -> [The goal of collaboration fests is to expand the ecosystem] Not just the code, but the whole ecosystem. That includes training, tools, best practice workflows, documentation, test cases, translations, infrastructure, and yes, even code. - -Prior to the CoFests, the scientific and AnVIL co-leads will work together to enumerate some ideas for final products and post them publicly in this book. - ## Logistics {- .unlisted} - 3 Parallel tracks, 5+ hours across Nov 12/13 - Scalable Machine Learning and Data Science - Polygenic Risk Score Analysis - Wrap a Tool (+ Intro AnVIL/WDL) -- Scientific Lead and AnVIL Outreach Co-Lead for support +- Scientific Lead and AnVIL Outreach co-Lead for support - We expect 4-10 participants per track -## Example Schedule for a Track {- .unlisted} +Prior to the CoFests, the scientific and AnVIL Outreach co-Leads will work together to enumerate some ideas for final products and post them publicly in this book. + +::: {.notice} +The AnVIL Outreach co-Lead will help add content to this guide, onboard newer AnVIL users to the platform, and provide guidance on the final product / report out. +::: -### Day 1 (2.5 hrs scheduled) +## Final Product / Report Out {-} + +The final product of CoFests doesn't need to be code! These Collaboration Fests can support story-boarding future work or development of documentation or training materials. If it's something that will help the community and make progress on an AnVIL associated topic and there's sufficient interest, the idea is game! [As Galaxy phrased it for their CoFests:](https://galaxyproject.org/events/gcc2023/cofest/#goals) + +> [The goal of collaboration fests is to expand the ecosystem] Not just the code, but the whole ecosystem. That includes training, tools, best practice workflows, documentation, test cases, translations, infrastructure, and yes, even code. + +::: {.notice} +It helps us a lot if you can fill out some basic [Report Out details](https://docs.google.com/document/d/1wLK88p_tY6L-a8IF5dIe7gmDlJC1RxeU8_pm1ClU2IE/edit?usp=sharing). At the end of Day 2, your track will **share a final report during the CoFest Recap Session**! +::: + +## Example Schedule for a Track {- .unlisted} -| Task | Suggested time | Lead | Description | -|:-------------------------:|:---------------|:----------------------|:------------| -| Problem statement | 20-30 minutes | Scientific Lead | Provide background info on the track's overall topic and may include a brief summary of the pre-worked collaboration ideas.| -| Brainstorming | 15-30 minutes | Both | What project will the track tackle? Focus on understanding the participant backgrounds and skills and matching those with track ideas and actionable tasks to accomplish the goal. | -| Onboarding | 30-60 minutes | AnVIL Outreach Co-lead| Handle billing accounts and other logistics necessary to accomplish the work | -| Work-regroup, work-regroup| 30-60 minutes | -- | Formal collaboration work time left before dinner. (Groups may choose to work together informally after dinner too) | +### Day 1 (2.5 hours) {-} -### Day 2 (3 hrs scheduled) +| Task | Time & Lead | +|:-------------------------:|:-----------:| +| **Problem statement.** Provide background info on the track's overall topic and may include a brief summary of the pre-worked collaboration ideas. | 20-30 minutes (Scientific Lead) | +| **Brainstorming.** What project will the track tackle? Focus on understanding the participant backgrounds and skills and matching those with track ideas and actionable tasks to accomplish the goal. | 15-30 minutes (Both) | +| **Onboarding.** Handle billing accounts and other logistics necessary to accomplish the work. | 30-60 minutes (AnVIL Outreach co-Lead) | +| **Work-regroup, work-regroup.** Formal collaboration work time left before dinner. (Groups may choose to work together informally after dinner too) | 30-60 minutes (N/A) | -| Task | Suggested time | Lead | Description | -|:-------------------------:|:---------------|:----------------------|:------------| -| Work-regroup, work-regroup| 2 - 2.5 hrs | -- | Formal collaboration work time (with a coffee break) | -| Construct a "report out" | 30 - 60 minutes| AnVIL Outreach Co-lead| The report out may be a Google doc, Google slides, a GitHub repository, [a website](https://github.com/jhudsl/OTTR_Template_Website), an [OTTR book](https://github.com/jhudsl/OTTR_Template), etc.| +### Day 2 (3 hours) {-} -End of Day 2: Share final report during the CoFest Recap Session! +| Task | Time & Lead | +|:-------------------------:|:------------| +| **Work-regroup, work-regroup.** Formal collaboration work time (with a coffee break). | 2-2.5 hours (N/A) | +| **Construct a "report out".** The report out may be a Google doc, Google slides, a GitHub repository, [a website](https://github.com/jhudsl/OTTR_Template_Website), an [OTTR book](https://github.com/jhudsl/OTTR_Template), etc. | 30-60 minutes (AnVIL Outreach co-Lead) | From 61ddc30dd1356005d9198cb509e6ab3d9453c7f0 Mon Sep 17 00:00:00 2001 From: avahoffman Date: Wed, 18 Sep 2024 10:53:41 -0400 Subject: [PATCH 14/16] fix url --- index.Rmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/index.Rmd b/index.Rmd index 1be86b2..2b93637 100644 --- a/index.Rmd +++ b/index.Rmd @@ -15,7 +15,7 @@ favicon: assets/AnVIL_style/anvil_favicon.ico CollaborationFests!, also known as **CoFests!** (and sometimes as "hackathons"), are collaborative work events where we expand and improve the AnVIL community and the AnVIL ecosystem. Sometimes these gatherings are focused on AnVIL, and sometimes they are part of larger communities. -* *Modified from https://galaxyproject.org/events/cofests* +* *Modified from * ## What's in a name: CollaborationFests! and Hackathons {- .unlisted} From 749f0410c1482905b38b05436e5b64f07e571872 Mon Sep 17 00:00:00 2001 From: avahoffman Date: Wed, 18 Sep 2024 11:01:55 -0400 Subject: [PATCH 15/16] Fix link --- index.Rmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/index.Rmd b/index.Rmd index 1be86b2..2b93637 100644 --- a/index.Rmd +++ b/index.Rmd @@ -15,7 +15,7 @@ favicon: assets/AnVIL_style/anvil_favicon.ico CollaborationFests!, also known as **CoFests!** (and sometimes as "hackathons"), are collaborative work events where we expand and improve the AnVIL community and the AnVIL ecosystem. Sometimes these gatherings are focused on AnVIL, and sometimes they are part of larger communities. -* *Modified from https://galaxyproject.org/events/cofests* +* *Modified from * ## What's in a name: CollaborationFests! and Hackathons {- .unlisted} From 69584e23edd1d74b44a80fb1145403990ec40ad8 Mon Sep 17 00:00:00 2001 From: avahoffman Date: Wed, 18 Sep 2024 11:02:57 -0400 Subject: [PATCH 16/16] Update dictionary.txt --- resources/dictionary.txt | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/resources/dictionary.txt b/resources/dictionary.txt index 8463dbf..34182d5 100644 --- a/resources/dictionary.txt +++ b/resources/dictionary.txt @@ -1,5 +1,6 @@ AnVIL BioDIGS +BioC BiocManager bioinformatics biomedical @@ -8,6 +9,7 @@ Bloomberg callout Callout CoFest +cofests CoFests colData CollaborationFests @@ -16,6 +18,7 @@ customizations dex dexamethasone dropdown +galaxyproject GDSCN github Glimma @@ -24,6 +27,7 @@ Gmail Hackathon hackathons Hackathons +https impactful Inclusivity Jupyter