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cluster.json
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cluster.json
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{
"__default__":
{
"time" : "2:00:00",
"mem" : "1G",
"n" : 1,
"tasks" : 1,
"name" : "{rule}-{wildcards}",
"logfile": "output/log/snake-{rule}-{wildcards}-%j.out",
"email": "[email protected]",
"emailtype": "ALL"
},
"run_flash_greedy":
{
"time" : "10:00:00",
"mem" : "30G",
"n" : 1,
"tasks" : 1,
"name" : "{rule}-{wildcards}",
"logfile": "output/log/snake-{rule}-{wildcards}-%j.out",
"email": "[email protected]",
"emailtype": "ALL"
},
"run_pca":
{
"time" : "24:00:00",
"mem" : "40G",
"n" : 1,
"tasks" : 1,
"name" : "{rule}-{wildcards}",
"logfile": "output/log/snake-{rule}-{wildcards}-%j.out",
"email": "[email protected]",
"emailtype": "ALL"
},
"run_flash_backfit":
{
"time" : "48:00:00",
"mem" : "50G",
"n" : 1,
"tasks" : 1,
"name" : "{rule}-{wildcards}",
"logfile": "output/log/snake-{rule}-{wildcards}-%j.out",
"email": "[email protected]",
"emailtype": "ALL"
},
"run_drift":
{
"time" : "48:00:00",
"mem" : "30G",
"n" : 1,
"tasks" : 1,
"name" : "{rule}-{wildcards}",
"logfile": "output/log/snake-{rule}-{wildcards}-%j.out",
"email": "[email protected]",
"emailtype": "ALL"
},
"run_drift_rand":
{
"time" : "48:00:00",
"mem" : "30G",
"n" : 1,
"tasks" : 1,
"name" : "{rule}-{wildcards}",
"logfile": "output/log/snake-{rule}-{wildcards}-%j.out",
"email": "[email protected]",
"emailtype": "ALL"
},
"run_admixture":
{
"time" : "24:00:00",
"mem" : "25G",
"n" : 1,
"tasks" : 1,
"name" : "{rule}-{wildcards}",
"logfile": "output/log/snake-{rule}-{wildcards}-%j.out",
"email": "[email protected]",
"emailtype": "ALL"
},
"run_admixture_benchmark":
{
"time" : "12:00:00",
"mem" : "20G",
"n" : 1,
"tasks" : 1,
"name" : "{rule}-{wildcards}",
"logfile": "output/log/snake-{rule}-{wildcards}-%j.out",
"email": "[email protected]",
"emailtype": "ALL"
},
"run_coalsim":
{
"time" : "4:00:00",
"mem" : "5G",
"n" : 1,
"tasks" : 1,
"name" : "{rule}-{wildcards}",
"logfile": "output/log/snake-{rule}-{wildcards}-%j.out",
"email": "[email protected]",
"emailtype": "ALL"
}
}