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index.html
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="eng"><!-- InstanceBegin template="/Templates/new_template_leftmenu.dwt" codeOutsideHTMLIsLocked="false" -->
<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta name="author" content="EBI Web Team" />
<meta http-equiv="Content-Language" content="en-GB" />
<meta http-equiv="Window-target" content="_top" />
<meta name="no-email-collection" content="http://www.unspam.com/noemailcollection/" />
<meta name="generator" content="Dreamweaver 8" />
<!-- InstanceBeginEditable name="doctitle" -->
<title id="doctitle">Course main page</title>
<!-- InstanceEndEditable -->
<link rel="stylesheet" href="http://www.ebi.ac.uk/inc/css/contents.css" type="text/css" />
<link rel="stylesheet" href="http://www.ebi.ac.uk/inc/css/userstyles.css" type="text/css" />
<script src="http://www.ebi.ac.uk/inc/js/contents.js" type="text/javascript"></script>
<link rel="stylesheet" href="http://www.ebi.ac.uk/inc/css/sidebars.css" type="text/css" />
<link rel="SHORTCUT ICON" href="http://www.ebi.ac.uk/bookmark.ico" />
<style type="text/css">
@media print {
body, .contents, .header, .contentsarea, .head {
position: relative;
}
}
</style>
<!-- InstanceBeginEditable name="head" -->
<!-- start meta tags, css , javascript here -->
<!-- end meta tags, css , javascript here -->
<!-- InstanceEndEditable -->
</head>
<body onload="if(navigator.userAgent.indexOf('MSIE') != -1) {document.getElementById('head').allowTransparency = true;}">
<div class="headerdiv" id="headerdiv" style="position:absolute; z-index: 1;">
<iframe src="/inc/head.html" name="head" id="head" frameborder="0" marginwidth="0px" marginheight="0px" scrolling="no" width="100%" style="position:absolute; z-index: 1; height: 57px;">Your browser does not support inline frames or is currently configured not to display inline frames. Content can be viewed at actual source page: http://www.ebi.ac.uk/inc/head.html</iframe>
</div>
<div class="contents" id="contents"><table class="contentspane" id="contentspane" summary="The main content pane of the page"><tr><td class="leftmargin"><img src="http://www.ebi.ac.uk/inc/images/spacer.gif" class="spacer" alt="spacer" /></td><td class="leftmenucell" id="leftmenucell">
<div class="leftmenu" id="leftmenu" style="width: 145px; visibility: visible; display: block;">
<!-- InstanceBeginEditable name="leftnav" -->
<!-- start left menu here -->
<script type="text/javascript" src="/inc/js/jquery.js"></script>
<script type="text/javascript">
$(document).ready(function() {
$("#commonheader").load("header.html");
$("#leftmenu").load("/~jherrero/left_menu.html" ,function() {
$("#courses").addClass("clickmeopen");
}
);
// Prepend title in "title.txt" if it exists
title = document.title;
$('#doctitle').load("title.txt", '', function(data) {
if ($(this).text() != title) {
document.title = $(this).text() + " - " + title
}
});
});
</script>
<!-- end left menu here -->
<!-- InstanceEndEditable -->
<!-- InstanceBeginEditable name="lefticons" -->
<!-- InstanceEndEditable -->
<script type="text/javascript" src="http://www.ebi.ac.uk/inc/js/sidebars.js"></script>
<img src="http://www.ebi.ac.uk/inc/images/spacer.gif" class="spacer" alt="spacer" /></div></td><td class="contentsarea" id="contentsarea">
<!-- InstanceBeginEditable name="contents" -->
<!-- start contents here -->
<div id="commonheader">
<div class="breadcrumbs">
<a href="http://www.ebi.ac.uk/" class="firstbreadcrumb">EBI</a>
<a href ="http://www.ebi.ac.uk/Information/Staff/">Staff</a>
<a href="http://www.ebi.ac.uk/~jherrero/">Javier Herrero</a>
<a href="http://www.ebi.ac.uk/~jherrero/courses/">Workshops</a></div>
<h1>This workshop</h1>
<p><span class="red_bold">Date</span></p>
</div>
<h2>Programme Overview</h2>
<ul>
<li>Ensembl overview
<ul>
<li>Introduction to the Ensembl project</li>
<li>Comparative Genomics in Ensembl</li>
</ul>
</li>
<li>Ensembl core API
<ul>
<li>Ensembl Perl API design</li>
<li>Registry</li>
<li>Slices</li>
<li>Genes, Transcripts, Exons</li>
<li>Translations</li>
<li>External References</li>
</ul>
</li>
<li>Whole genome alignments
<ul>
<li>Dynamic programming</li>
<li>Whole genome alignments strategies</li>
<li>Alignment assessment</li>
<li>Sequence conservation</li>
</ul>
</li>
<li>Ensembl Compara API
<ul>
<li>Registry</li>
<li>MethodLinkSpeciesSet</li>
<li>GenomeDB</li>
<li>DnaFrag</li>
<li>GenomicAlignBlock</li>
<li>ConservationScore</li>
<li>AlignSlice</li>
</ul>
</li>
</ul>
<h2>Documents and resources</h2>
<ul>
<li>Ensembl Introduction
<ul>
<li>Handouts [ <a href="Ensembl.pdf" class="pubpdf">PDF</a> | <a href="Ensembl.ppt" class="pubppt">PowerPoint</a> ]</li>
</ul>
</li>
<li>Ensembl Core API
<ul>
<li>Handouts [ <a href="CoreAPI.pdf">PDF</a> | <a href="CoreAPI.ppt" class="pubppt">PowerPoint</a> ]</li>
<li>Exercises [ <a href="CoreAPI.html" class="pubhtml">HTML</a> ]</li>
<li>Questions [ <a href="http://www.surveymonkey.com/s/JH3NMHV">HTML</a> ]</li>
</ul>
</li>
<li>Whole Genome Alignments
<ul>
<li>Handouts [ <a href="Whole_Genome_Alignments.pdf" class="pubpdf">PDF</a> | <a href="Whole_Genome_Alignments.ppt" class="pubppt">PowerPoint</a> ]</li>
<li>Whole genome alignments: [ <a href="Exercises/alignments.html" class="pubhtml">HTML</a> ]</li>
<li>Genomic sequence conservation: [ <a href="Exercises/conservation.html" class="pubhtml">HTML</a> ]</li>
<li>Display of constrained elements: [ <a href="Exercises/display.html" class="pubhtml">HTML</a> ]</li>
<li>Questions [<a href="http://www.surveymonkey.com/s/JPKSGKJ" class="pubhtml">HTML</a> ]</li>
</ul>
</li>
<li>Ensembl Compara API
<ul>
<li>Handouts [ <a href="ComparaAPI.pdf" class="pubpdf">PDF</a> | <a href="ComparaAPI.ppt" class="pubppt">PowerPoint</a> ]</li>
<li>Exercises [ <a href="ComparaAPI.html" class="pubhtml">HTML</a> ]</li>
<li>Questions [ <a href="http://www.surveymonkey.com/s/JPV82NN" class="pubhtml">HTML</a> ]</li>
</ul>
</li>
</ul>
<!-- end contents here -->
<!-- InstanceEndEditable -->
<img src="http://www.ebi.ac.uk/inc/images/spacer.gif" class="spacer" alt="spacer" /></td>
<td class="rightmenucell" id="rightmenucell"><div class="rightmenu" id="rightmenu"><img src="http://www.ebi.ac.uk/inc/images/spacer.gif" class="spacer" alt="spacer" /></div></td></tr></table>
<table class="footerpane" id="footerpane" summary="The main footer pane of the page"><tr><td colspan ="4" class="footerrow"><div class="footerdiv" id="footerdiv" style="z-index:2;"><iframe src="/inc/foot.html" name="foot" frameborder="0" marginwidth="0px" marginheight="0px" scrolling="no" height="22px" width="100%" style="z-index:2;">Your browser does not support inline frames or is currently configured not to display inline frames. Content can be viewed at actual source page: http://www.ebi.ac.uk/inc/foot.html</iframe></div></td></tr>
</table>
<script src="http://www.ebi.ac.uk/inc/js/footer.js" type="text/javascript"></script>
</div>
</body>
<!-- InstanceEnd --></html>