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Confusion description for the -q flag #13

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Redmar-van-den-Berg opened this issue Jun 14, 2023 · 0 comments
Open

Confusion description for the -q flag #13

Redmar-van-den-Berg opened this issue Jun 14, 2023 · 0 comments

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@Redmar-van-den-Berg
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Describe the bug
The description for the -q flag is counter intuitive. It now reads like you have to pass the -q flag to write a deduplicated FastQ file, while -q is in fact to suppress writing the deduplicated FastQ files

Current description
-q write deduplicated FastQ files (type flag, default: enabled)

Suggested description
-q don't write deduplicated FastQ files (type flag, default: disabled)

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