-
Notifications
You must be signed in to change notification settings - Fork 0
/
reprocess2.m~
17 lines (14 loc) · 738 Bytes
/
reprocess2.m~
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
clones={'DB1','DD3','EC5','H9'};
thresh=[1.4,2.8,2.8];
basedir='/auto/sahara/namib/home/jefoley/LGM2_NSA_Noise/';
for i=1:length(clones)
load([basedir,'LGM2_',clones{i},'/processed/cellpop.mat']);
cellpop.setProps('FISH',struct('TH_SHAPE','elliptic','TH_TYPE','texture','TH_COLOR','white','TH_SIZE',7,'PROBE_THRESH',0.5,...
'BURST_THRESH',0.9,'CONN',2,'GRAD_SIGMA',0.9,'LABEL_MIN',50,'LABEL_MAX',300,'P2A_MAX',1.02,...
'SA_MIN',85,'P2A_MIN',0.96,'P2A_ABSMAX',1.15,'SD_THRESH',1,'GREY_SDMAX',1.35,'BURST_MINSD',23));
cellpop.setProps('FISH',{'PROBE_THRESH',thresh(i)});
cellpop.process('requantitate',1);
clearvars -except clones thresh basedir i
end
loadClones(clones);
exit