diff --git a/combine_kreports.py b/combine_kreports.py
index 41d74ae..9035f08 100755
--- a/combine_kreports.py
+++ b/combine_kreports.py
@@ -118,8 +118,8 @@ def process_kraken_report(curr_str):
     #Extract relevant information
     all_reads =  int(split_str[1])
     level_reads = int(split_str[2])
-    level_type = split_str[3]
-    taxid = split_str[4] 
+    level_type = split_str[-3]
+    taxid = split_str[-2] 
     #Get name and spaces
     spaces = 0
     name = split_str[-1]