Feature/add smart health links #335
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WalkthroughThis pull request introduces several changes across multiple files, including updates to the Changes
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Actionable comments posted: 35
🧹 Outside diff range and nitpick comments (21)
build-image.sh (2)
8-8: Remove redundant quotes in path variableThe
${PWD}variable is already within double quotes, making the additional quotes around it redundant.- ImageTag=$(grep 'image:' "${PWD}"/config.yaml | cut -d : -f 3) + ImageTag=$(grep 'image:' "${PWD}/config.yaml" | cut -d : -f 3)
Line range hint
1-15: Add error handling and input validationThe script could benefit from additional robustness improvements:
- Error handling for grep/cut operations
- Validation of the extracted ImageTag
- ShellCheck directives
Consider applying these improvements:
#!/bin/bash +set -euo pipefail + +# shellcheck disable=SC2086 + TAG_NAME=${1:-latest} # We did not specify a tag so try and use the tag in the config.yaml if present if [ -z "$1" ]; then - # we grep out 'image: jembi/platform:2.x' from which we cut on : and choose the last column - # this will always be the image tag or an empty string - ImageTag=$(grep 'image:' "${PWD}"/config.yaml | cut -d : -f 3) - # only overwrite TAG_NAME if we have a tag present, and it's not just the base image name - if [ -n "$ImageTag" ]; then - TAG_NAME=${ImageTag} - fi + CONFIG_FILE="${PWD}/config.yaml" + if [ ! -f "$CONFIG_FILE" ]; then + echo "Error: config.yaml not found" >&2 + exit 1 + fi + + # Extract and validate image tag + if ! ImageTag=$(grep 'image:' "$CONFIG_FILE" | cut -d : -f 3); then + echo "Warning: Failed to extract image tag from config.yaml" >&2 + elif [ -n "$ImageTag" ] && [[ $ImageTag =~ ^[a-zA-Z0-9][a-zA-Z0-9._-]*$ ]]; then + TAG_NAME=$ImageTag + fi fismart-health-links-portal/importer/docker-compose.keycloak.yml (1)
38-41: Review network security configurationThe current setup uses a public network for Keycloak configuration, which might expose sensitive operations unnecessarily. Consider:
- Using an internal network for Keycloak configuration
- Implementing network segmentation
- Adding network access controls
Here's a suggested approach:
networks: public: - name: keycloak_public + name: keycloak_internal external: true + driver_opts: + encrypted: "true"Additionally, consider implementing network policies to restrict access to the Keycloak service only from authorized services.
smart-health-links-portal/importer/docker-compose.postgres.yml (2)
23-26: Consider adjusting deployment configuration for better reliabilityThe current deployment configuration might lead to reliability issues:
- No restart policy could lead to service staying down after temporary failures
- Health checks are missing
Consider applying these improvements:
deploy: replicas: 1 restart_policy: - condition: none + condition: on-failure + max_attempts: 3 + healthcheck: + test: ["CMD", "node", "-e", "require('http').get('http://localhost:3000/health', (r) => process.exit(r.statusCode === 200 ? 0 : 1))"] + interval: 30s + timeout: 10s + retries: 3
33-43: Add newline at end of fileThe configuration looks good, but there's a minor formatting issue to fix.
Add a newline at the end of the file:
labels: - name: smart-health-links-importer + name: smart-health-links-importer +🧰 Tools
🪛 yamllint (1.35.1)
[error] 43-43: no new line character at the end of file
(new-line-at-end-of-file)
smart-health-links-portal/importer/docker-compose.openhim.yml (1)
22-25: Add healthcheck configurationThe service lacks health monitoring. Add a healthcheck to ensure the service is functioning correctly.
deploy: replicas: 1 restart_policy: condition: none + healthcheck: + test: ["CMD", "node", "-e", "require('http').get('${OPENHIM_CONSOLE_BASE_URL}', (res) => process.exit(res.statusCode === 200 ? 0 : 1))"] + interval: 30s + timeout: 10s + retries: 3smart-health-links-portal/docker-compose.yml (2)
6-10: Consider network security constraintsThe service is connected to multiple external networks which increases the attack surface. Consider:
- Adding network aliases for service discovery
- Implementing network security rules
- Documenting the purpose of each network connection
networks: hapi-fhir: + aliases: + - shl-portal + # Add comment explaining why this network is needed openhim: + aliases: + - shl-portal reverse-proxy: + aliases: + - shl-portal postgres: + aliases: + - shl-portal
33-46: Document network requirements and remove unused networksThe network configuration could be improved by:
- Documenting the purpose and requirements of each external network
- Removing the unused
defaultnetworknetworks: hapi-fhir: name: hapi-fhir_public external: true + # Required for FHIR server communication openhim: name: openhim_public external: true + # Required for OpenHIM integration reverse-proxy: name: reverse-proxy_public external: true + # Required for external access routing postgres: name: postgres_public external: true + # Required for database connectivity - default:smart-health-links-portal/importer/volume/postgres/create-db.js (1)
1-54: Add tests and improve documentationConsider these additional improvements:
- Add unit tests for the database creation logic
- Add integration tests with a test database
- Add JSDoc comments for better documentation
- Add a README explaining the purpose and usage of this script
Would you like me to help create:
- A test suite using Jest?
- JSDoc documentation?
- A README template?
smart-health-links-portal/importer/volume/openhim/openhim-import.json (1)
60-63: Consider enabling auto-retry for reliabilityThe current configuration has:
rewriteUrls: falsebutaddAutoRewriteRules: truewhich might cause confusionautoRetryEnabled: falsewhich could affect reliability when the FHIR server is temporarily unavailableConsider enabling auto-retry for better reliability:
"rewriteUrls": false, "addAutoRewriteRules": true, "rewriteUrlsConfig": [], - "autoRetryEnabled": false, + "autoRetryEnabled": true,smart-health-links-portal/importer/volume/openhim/openhimConfig.js (1)
48-75: Refactor request options setup for better maintainabilityThe current implementation has duplicated code and hardcoded values that should be configurable.
Consider this more maintainable approach:
+const DEFAULT_CONFIG = { + protocol: process.env.OPENHIM_PROTOCOL || 'https:', + port: parseInt(process.env.OPENHIM_PORT, 10) || 8080, +}; + +function createRequestOptions(path, method, data = null) { + const baseOptions = { + protocol: DEFAULT_CONFIG.protocol, + hostname: OPENHIM_CORE_SERVICE_NAME, + port: DEFAULT_CONFIG.port, + path, + method, + headers: { + 'Content-Type': 'application/json', + Authorization: `Basic ${authHeader}`, + }, + }; + + if (data && method !== 'GET') { + baseOptions.headers['Content-Length'] = Buffer.byteLength(data); + } + + return baseOptions; +} + -const options = { - protocol: "https:", - hostname: OPENHIM_CORE_SERVICE_NAME, - // ... rest of the options -}; - -const reqOptions = createRequestOptions('/metadata', 'POST', data); -const importMapRebuildOptions = createRequestOptions('/apps', 'GET');smart-health-links-portal/swarm.sh (2)
55-57: Enhance destroy_package function with validation and cleanupThe function should validate stack existence and ensure proper cleanup of resources.
function destroy_package() { + log info "Preparing to destroy stack: ${STACK}" + + # Verify stack exists + if ! docker stack ls --format '{{.Name}}' | grep -q "^${STACK}$"; then + log warn "Stack ${STACK} does not exist" + return 0 + fi + + # Scale down services before destroying + log info "Scaling down services" + docker::scale_services "${STACK}" 0 + + log info "Destroying stack" docker::stack_destroy "$STACK" + + # Verify stack is destroyed + if docker stack ls --format '{{.Name}}' | grep -q "^${STACK}$"; then + log error "Failed to destroy stack ${STACK}" + return 1 + fi + + log info "Stack ${STACK} destroyed successfully" }
59-83: Enhance CLI handling with proper argument parsing and help informationThe script would benefit from proper argument parsing and usage information.
+function print_usage() { + cat << EOF +Usage: $(basename "$0") ACTION [MODE] + +Actions: + init Initialize and deploy the stack + up Deploy the stack + down Scale down services + destroy Remove the stack and cleanup resources + +Modes: + dev Development mode + prod Production mode (default) + +Environment variables: + CLUSTERED_MODE Set to "true" for cluster node mode + +Example: + $(basename "$0") init dev +EOF +} + main() { + if [[ "$1" == "-h" ]] || [[ "$1" == "--help" ]]; then + print_usage + exit 0 + fi + init_vars "$@" import_sources if [[ "${ACTION}" == "init" ]] || [[ "${ACTION}" == "up" ]]; then if [[ "${CLUSTERED_MODE}" == "true" ]]; then log info "Running package in Cluster node mode" else log info "Running package in Single node mode" fi initialize_package elif [[ "${ACTION}" == "down" ]]; then log info "Scaling down package" docker::scale_services "$STACK" 0 elif [[ "${ACTION}" == "destroy" ]]; then log info "Destroying package" destroy_package else - log error "Valid options are: init, up, down, or destroy" + log error "Invalid action: ${ACTION}" + print_usage exit 1 fi }config.yaml (1)
101-104: Consider service dependencies and startup orderThe package list includes interdependent services. Consider adding comments or documentation about the required startup order:
- database-postgres
- fhir-datastore-hapi-fhir
- interoperability-layer-openhim
- smart-health-links-portal
smart-health-links-portal/importer/volume/keycloak/keycloak-realm.json (2)
1405-1414: Enhance Browser Security HeadersWhile the basic security headers are configured, they could be strengthened:
Consider these enhancements:
"browserSecurityHeaders": { "contentSecurityPolicyReportOnly": "", "xContentTypeOptions": "nosniff", - "referrerPolicy": "no-referrer", + "referrerPolicy": "strict-origin-when-cross-origin", "xRobotsTag": "none", "xFrameOptions": "SAMEORIGIN", - "contentSecurityPolicy": "frame-src 'self'; frame-ancestors 'self'; object-src 'none';", + "contentSecurityPolicy": "default-src 'self'; frame-src 'self'; frame-ancestors 'self'; object-src 'none'; script-src 'self'; style-src 'self'; img-src 'self' data:;", "xXSSProtection": "1; mode=block", - "strictTransportSecurity": "max-age=31536000; includeSubDomains" + "strictTransportSecurity": "max-age=31536000; includeSubDomains; preload" }
1537-1541: Improve Phone Number ValidationThe current phone number validation regex only supports Kenyan phone numbers and could be more robust.
Consider using a more comprehensive regex that:
- Supports international formats
- Validates proper number lengths
- Handles various separators
- "pattern": "^(?:\\+254|0)(7|1)\\d{8}$", + "pattern": "^\\+?[1-9]\\d{1,14}$",This follows the E.164 format which is the international standard for phone numbers.
smart-health-links-portal/importer/volume/keycloak/keycloakConfig.js (5)
6-7: Make Keycloak URL and Port Configurable via Environment VariablesHardcoding the Keycloak URL and port limits flexibility across different environments. Consider using environment variables to make
keycloakUrlandkeycloakPortconfigurable.Apply this diff to implement the change:
-const keycloakUrl = 'http://localhost'; // http://identity-access-manager-keycloak -const keycloakPort = 9088; +const keycloakUrl = process.env.KEYCLOAK_URL || 'http://localhost'; // http://identity-access-manager-keycloak +const keycloakPort = process.env.KEYCLOAK_PORT || 9088;
131-131: Remove Debuggingconsole.logStatementThe
console.log(realmExists)statement appears to be for debugging purposes and may not be necessary in the final code. Consider removing it to clean up the output.Apply this diff to remove the statement:
console.log(realmExists)
138-138: Improve Error Logging for Keycloak Configuration UpdateCurrently, the error message may not provide sufficient context. Include more detailed information to aid in troubleshooting.
Apply this diff to enhance the error logging:
console.error('Something went wrong with the keycloak config update: ', updateCreateRealmRes) +if (updateCreateRealmRes.message) { + console.error('Error details:', updateCreateRealmRes.message); +}
141-141: Remove Unused Commented-Out CodeThe commented-out line appears to be residual code. Removing it will improve code readability.
Apply this diff to remove the commented code:
-//await new Promise(resolve => setTimeout(resolve, 60000));
13-15: Use Asynchronous File ReadingSynchronous file reading with
fs.readFileSynccan block the event loop. Consider usingfs.readFilefor asynchronous reading to improve performance.Apply this diff to use asynchronous file reading:
-let realmConfig = JSON.parse( - fs.readFileSync(path.join(__dirname, 'keycloak-realm.json'), 'utf8') -); +let realmConfig; +fs.readFile(path.join(__dirname, 'keycloak-realm.json'), 'utf8', (err, data) => { + if (err) throw err; + realmConfig = JSON.parse(data); +});Note: You'll need to adjust the code to ensure
realmConfigis available before it's used elsewhere.
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Review profile: CHILL
📒 Files selected for processing (18)
.gitignore(1 hunks)build-image.sh(1 hunks)config.yaml(3 hunks)identity-access-manager-keycloak/docker-compose.yml(1 hunks)smart-health-links-portal.env(1 hunks)smart-health-links-portal/docker-compose.dev.yml(1 hunks)smart-health-links-portal/docker-compose.yml(1 hunks)smart-health-links-portal/importer/docker-compose.keycloak.yml(1 hunks)smart-health-links-portal/importer/docker-compose.openhim.yml(1 hunks)smart-health-links-portal/importer/docker-compose.postgres.yml(1 hunks)smart-health-links-portal/importer/volume/keycloak/keycloak-realm.json(1 hunks)smart-health-links-portal/importer/volume/keycloak/keycloakConfig.js(1 hunks)smart-health-links-portal/importer/volume/openhim/openhim-import.json(1 hunks)smart-health-links-portal/importer/volume/openhim/openhimConfig.js(1 hunks)smart-health-links-portal/importer/volume/postgres/create-db.js(1 hunks)smart-health-links-portal/importer/volume/postgres/package.json(1 hunks)smart-health-links-portal/package-metadata.json(1 hunks)smart-health-links-portal/swarm.sh(1 hunks)
✅ Files skipped from review due to trivial changes (3)
- .gitignore
- smart-health-links-portal/importer/volume/postgres/package.json
- smart-health-links-portal/package-metadata.json
🧰 Additional context used
🪛 Gitleaks (8.21.2)
smart-health-links-portal.env
11-11: Detected a Generic API Key, potentially exposing access to various services and sensitive operations.
(generic-api-key)
🪛 yamllint (1.35.1)
smart-health-links-portal/importer/docker-compose.postgres.yml
[error] 43-43: no new line character at the end of file
(new-line-at-end-of-file)
🔇 Additional comments (11)
smart-health-links-portal/importer/docker-compose.keycloak.yml (1)
26-36: Verify the existence and content of Keycloak configuration files
The config files are properly versioned and labeled. However, let's verify that the referenced configuration files exist and contain valid content.
✅ Verification successful
Keycloak configuration files are present and valid
Both configuration files exist and pass validation:
keycloakConfig.jsis a valid JavaScript filekeycloak-realm.jsonis a valid JSON file
🏁 Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash
# Check if config files exist and are valid
echo "Checking Keycloak config files..."
# Check keycloakConfig.js
if [ -f "./smart-health-links-portal/importer/volume/keycloak/keycloakConfig.js" ]; then
echo "keycloakConfig.js exists"
# Verify it's a valid JS file
node -c "./smart-health-links-portal/importer/volume/keycloak/keycloakConfig.js" 2>/dev/null
if [ $? -eq 0 ]; then
echo "keycloakConfig.js is valid JavaScript"
else
echo "ERROR: keycloakConfig.js contains syntax errors"
fi
else
echo "ERROR: keycloakConfig.js not found"
fi
# Check keycloak-realm.json
if [ -f "./smart-health-links-portal/importer/volume/keycloak/keycloak-realm.json" ]; then
echo "keycloak-realm.json exists"
# Verify it's valid JSON
jq '.' "./smart-health-links-portal/importer/volume/keycloak/keycloak-realm.json" >/dev/null 2>&1
if [ $? -eq 0 ]; then
echo "keycloak-realm.json is valid JSON"
else
echo "ERROR: keycloak-realm.json contains invalid JSON"
fi
else
echo "ERROR: keycloak-realm.json not found"
fi
Length of output: 727
smart-health-links-portal/importer/docker-compose.postgres.yml (2)
28-31: LGTM! Network configuration is appropriate
The external network configuration is correct for connecting to a PostgreSQL instance managed outside this compose file.
7-11: Verify the existence of required configuration files
The service depends on two configuration files that need to be present at the specified locations.
✅ Verification successful
Configuration files are present and properly configured
Both required files (package.json and create-db.js) exist in the correct location, and the package.json includes the necessary PostgreSQL dependency. The config mappings in the docker-compose file are valid.
🏁 Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash
# Description: Verify the existence of required configuration files
# Expected: Both files should exist in the ./volume/postgres directory
echo "Checking for required configuration files..."
fd -t f "package.json|create-db.js" ./smart-health-links-portal/importer/volume/postgres
# Verify package.json contains required database setup dependencies
if [ -f "./smart-health-links-portal/importer/volume/postgres/package.json" ]; then
echo "Checking package.json dependencies..."
cat ./smart-health-links-portal/importer/volume/postgres/package.json | jq '.dependencies | has("pg")'
fi
Length of output: 595
smart-health-links-portal/importer/docker-compose.openhim.yml (3)
14-14:
Security Risk: SSL verification is disabled
Setting NODE_TLS_REJECT_UNAUTHORIZED=0 disables SSL certificate validation, which is a security risk. This should be temporary and documented as a security exception.
39-43: Verify external network dependency
The service depends on an external network openhim_public. Ensure this network exists and is properly documented.
✅ Verification successful
Let me check which file actually creates this network by looking for its definition.
Let me check the interoperability-layer-openhim service since it seems to be the main OpenHIM component.
External network dependency is properly configured
The openhim_public network is created and managed by the interoperability-layer-openhim service, which is the main OpenHIM component in the architecture. This network is correctly marked as external in your docker-compose file since it's meant to be shared across multiple services that need to communicate with OpenHIM. The network is used by various components including mediators, importers, and the OpenHIM core itself, which is the expected setup for an OpenHIM-based architecture.
🏁 Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash
# Look for other docker-compose files that might create this network
echo "Checking for openhim_public network definition..."
fd -t f "docker-compose" -X grep -l "openhim_public"
Length of output: 842
Script:
#!/bin/bash
# Look for the network creation definition
echo "Checking for openhim_public network creation..."
fd -t f "docker-compose" -X grep -A 5 -B 5 'name: openhim_public'
Length of output: 8793
Script:
#!/bin/bash
# Check the interoperability-layer-openhim service configuration
echo "Checking OpenHIM service configuration..."
cat ./interoperability-layer-openhim/docker-compose.yml
Length of output: 5131
28-37: Verify config files existence and document digest variables
The configuration depends on two files and digest variables that need to be verified:
./volume/openhim/openhimConfig.js./volume/openhim/openhim-import.json
✅ Verification successful
Config files exist and digest variables are part of Docker's config versioning pattern
The required configuration files are present and readable:
./volume/openhim/openhimConfig.js- Contains OpenHIM API configuration for importing metadata./volume/openhim/openhim-import.json- Contains OpenHIM channel and client configurations
The *_DIGEST variables in the docker-compose files are part of a common pattern for versioning config files in Docker configs. These variables are typically auto-generated during the Docker build/deployment process to ensure proper config versioning and updates.
🏁 Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash
# Check if config files exist and are readable
echo "Checking config files..."
ls -l ./smart-health-links-portal/importer/volume/openhim/openhimConfig.js ./smart-health-links-portal/importer/volume/openhim/openhim-import.json
# Look for documentation about digest variables
echo "Checking for digest variables documentation..."
fd -t f "README|.env.example" -X grep -l "DIGEST"
Length of output: 599
Script:
#!/bin/bash
# Let's check for any documentation or usage of digest variables in docker-compose files
echo "Checking docker-compose files for digest variables..."
fd -e yml -e yaml docker-compose -X grep -l "DIGEST"
# Let's also check the content of these files to understand how digests are used
echo "Content of docker-compose files with DIGEST:"
fd -e yml -e yaml docker-compose -X grep -A 2 -B 2 "DIGEST"
# Check for any build or configuration scripts that might generate these digests
echo "Checking for build or configuration scripts..."
fd -e sh -e js -X grep -l "DIGEST"
Length of output: 50495
Script:
#!/bin/bash
# Let's check for any build scripts or Makefiles that might generate these digests
echo "Checking for build scripts..."
fd Makefile -X cat {} \;
fd -e sh build -X cat {} \;
# Let's also check the content of the config files to understand their role
echo "Content of config files..."
cat ./smart-health-links-portal/importer/volume/openhim/openhimConfig.js ./smart-health-links-portal/importer/volume/openhim/openhim-import.json
Length of output: 4500
smart-health-links-portal/docker-compose.yml (1)
1-46: Verify availability of required external services
Please ensure that all required external services (HAPI FHIR, OpenHIM, Postgres, Keycloak) are properly configured and available before deploying this service.
Let's check for the existence of these services in the Docker Compose files:
✅ Verification successful
The previous output showed many compose files but we need to verify if the main services (HAPI FHIR, OpenHIM, Postgres, Keycloak) are properly defined and expose the networks that our portal needs. Let's examine their compose files directly and check for environment variable templates to ensure all required variables are defined.
All required external services and networks are properly configured
The verification of docker-compose files confirms that all required external services and networks are properly defined and accessible:
- HAPI FHIR exposes
hapi-fhir_publicnetwork - OpenHIM exposes
openhim_publicnetwork - Keycloak exposes
keycloak_publicnetwork - Postgres network
postgres_publicis exposed by the database service
All these networks match exactly with what the Smart Health Links Portal is trying to connect to in its docker-compose.yml. The services are properly configured with their required environment variables and network configurations.
🏁 Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash
# Check for required service definitions
echo "Checking for required service definitions..."
fd -t f "docker-compose.*\.yml$" . --exec grep -l -E "(hapi-fhir|openhim|postgres|keycloak)"
# Check for network definitions in other compose files
echo "Checking for network definitions..."
fd -t f "docker-compose.*\.yml$" . --exec grep -A 2 -B 2 "(hapi-fhir_public|openhim_public|postgres_public)"
Length of output: 2649
Script:
#!/bin/bash
# Check for network definitions in the main services
echo "=== Checking network definitions in main services ==="
fd -t f "docker-compose.yml$" -E "importer" ./fhir-datastore-hapi-fhir ./interoperability-layer-openhim ./database-postgres ./identity-access-manager-keycloak --exec cat
# Check for environment variable definitions
echo -e "\n=== Checking environment files for required variables ==="
fd -t f "\.env\.template$" . --exec grep -l -E "(HAPI_FHIR|OPENHIM|POSTGRES|KEYCLOAK)"
Length of output: 10533
smart-health-links-portal/importer/volume/openhim/openhim-import.json (2)
4-11: Review client authentication security
The client configuration appears minimal. Consider the following security aspects:
- No client secret is defined
- The clientID is a simple abbreviation ("shlp")
- The customTokenID matches the clientID
2-3: Verify if empty Users and Passports configurations are intentional
The Users and Passports arrays are empty. Please confirm if user management is handled elsewhere in the system.
✅ Verification successful
Let's gather more specific information about user management in the system by examining the Keycloak and OpenHIM configurations.
Based on the examination of the configuration files, I can now provide a final response:
Empty Users and Passports arrays are intentional
The empty Users and Passports arrays in openhim-import.json are correct because user management is handled by Keycloak (identity-access-manager). This is evidenced by:
- The OpenHIM client configuration in Keycloak (
identity-access-manager-keycloak/config/openhim.json) - OpenHIM's authentication is integrated with Keycloak via OpenID Connect
- The docker compose configuration shows OpenHIM is configured via environment variables for basic admin access
🏁 Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash
# Description: Check for user management configurations in other files
# Look for related user configuration files
fd -e json -e yaml -e yml . | xargs rg -l "Users|Passports|Authentication|auth"
Length of output: 1994
Script:
#!/bin/bash
# Check Keycloak realm configuration for user management
cat smart-health-links-portal/importer/volume/keycloak/keycloak-realm.json
# Check OpenHIM configurations in related services
cat identity-access-manager-keycloak/config/openhim.json
# Check OpenHIM docker compose configuration
cat smart-health-links-portal/importer/docker-compose.openhim.yml
Length of output: 81572
config.yaml (1)
6-6: Verify package dependencies for smart-health-links-portal
The package depends on several services (database-postgres, fhir-datastore-hapi-fhir, interoperability-layer-openhim) as seen in its profile. Consider documenting these dependencies in a README or deployment guide to ensure proper setup.
identity-access-manager-keycloak/docker-compose.yml (1)
10-10: Verify Keycloak version compatibility for hostname parameter
The change from --hostname-url to --hostname parameter suggests a breaking change in Keycloak's configuration. Please ensure this change aligns with the version of Keycloak being used (${KEYCLOAK_IMAGE}).
✅ Verification successful
Parameter change is correct for Keycloak 25.0
The change from --hostname-url to --hostname is correct and aligned with Keycloak 25.0's configuration parameters. The image being used is keycloak/keycloak:25.0, and in this version, --hostname is the correct parameter for configuring the frontend URL.
🏁 Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash
# Description: Check if the image tag matches the parameter change requirements
# Extract Keycloak version from env files or related configs
fd -t f ".*env$" -x grep -l "KEYCLOAK_IMAGE"
# Check Keycloak documentation for the specific version
echo "Manual verification needed: Please check https://www.keycloak.org/server/all-config for the correct parameter based on your Keycloak version"
Length of output: 367
Script:
#!/bin/bash
# Let's check the content of the env file to find the Keycloak image version
cat smart-health-links-portal.env | grep KEYCLOAK_IMAGE
# Also check the docker-compose file for any direct image reference
grep -A 1 "keycloak:" identity-access-manager-keycloak/docker-compose.yml
Length of output: 236
| - target: 3000 | ||
| published: ${SMART_HEALTH_LINKS_PORTAL_PORT} | ||
| mode: host |
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Security Warning: Avoid using host network mode in Docker
Using mode: host bypasses Docker's network isolation, potentially exposing your service directly to the host network. This can lead to security vulnerabilities and port conflicts.
Consider using the default bridge network mode instead:
ports:
- - target: 3000
- published: ${SMART_HEALTH_LINKS_PORTAL_PORT}
- mode: host
+ - "${SMART_HEALTH_LINKS_PORTAL_PORT}:3000"📝 Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| - target: 3000 | |
| published: ${SMART_HEALTH_LINKS_PORTAL_PORT} | |
| mode: host | |
| - "${SMART_HEALTH_LINKS_PORTAL_PORT}:3000" |
| smart-health-links-portal: | ||
| ports: | ||
| - target: 3000 | ||
| published: ${SMART_HEALTH_LINKS_PORTAL_PORT} | ||
| mode: host |
There was a problem hiding this comment.
🛠️ Refactor suggestion
Add essential service configurations
The service configuration is missing several important elements that would improve reliability and maintainability.
Consider adding these configurations:
smart-health-links-portal:
+ restart: unless-stopped
+ healthcheck:
+ test: ["CMD", "curl", "-f", "http://localhost:3000/health"]
+ interval: 30s
+ timeout: 10s
+ retries: 3
+ deploy:
+ resources:
+ limits:
+ memory: 512M
+ reservations:
+ memory: 256M
ports:
- "${SMART_HEALTH_LINKS_PORTAL_PORT}:3000"This adds:
- Automatic restart policy
- Health monitoring
- Memory resource constraints
Committable suggestion skipped: line range outside the PR's diff.
| # only overwrite TAG_NAME if we have a tag present, and it's not just the base image name | ||
| if [ -n "$ImageTag" ]; then | ||
| TAG_NAME=${ImageTag} | ||
| fi | ||
| fi | ||
|
|
||
| docker build -t jembi/platform:"$TAG_NAME" . | ||
| docker build -t jembi/platform:"$TAG_NAME" . --no-cache |
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🛠️ Refactor suggestion
Reconsider the use of --no-cache flag
The --no-cache flag forces Docker to rebuild all layers, which can significantly increase build time and resource usage. This is usually not recommended for development workflows unless there are specific caching issues to address.
Consider making it conditional:
-docker build -t jembi/platform:"$TAG_NAME" . --no-cache
+# Use --no-cache only when explicitly requested
+NO_CACHE=${NO_CACHE:-}
+if [ -n "$NO_CACHE" ]; then
+ docker build -t jembi/platform:"$TAG_NAME" . --no-cache
+else
+ docker build -t jembi/platform:"$TAG_NAME" .
+fi📝 Committable suggestion
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Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| docker build -t jembi/platform:"$TAG_NAME" . --no-cache | |
| # Use --no-cache only when explicitly requested | |
| NO_CACHE=${NO_CACHE:-} | |
| if [ -n "$NO_CACHE" ]; then | |
| docker build -t jembi/platform:"$TAG_NAME" . --no-cache | |
| else | |
| docker build -t jembi/platform:"$TAG_NAME" . | |
| fi |
| # container for executing config import scripts for creating the Keycloak Realm used for SHLP User Auth | ||
| shlp-keycloak-config-importer: | ||
| image: node:erbium-alpine | ||
| networks: | ||
| public: | ||
| environment: | ||
| KEYCLOAK_ADMIN: ${KEYCLOAK_ADMIN} | ||
| KEYCLOAK_ADMIN_PASSWORD: ${KEYCLOAK_ADMIN_PASSWORD} | ||
| NEXTAUTH_URL: ${SHLP_NEXTAUTH_URL} | ||
| KEYCLOAK_CLIENT_SECRET: ${SHLP_KEYCLOAK_CLIENT_SECRET} | ||
|
|
||
| command: sh -c "node keycloakConfig.js" | ||
| configs: | ||
| - source: keycloakConfig.js | ||
| target: /keycloakConfig.js | ||
| - source: keycloak-realm.json | ||
| target: /keycloak-realm.json | ||
| deploy: | ||
| replicas: 1 | ||
| restart_policy: | ||
| condition: none |
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Security and reliability concerns in service configuration
-
The
node:erbium-alpineimage is using Node.js v14 (Erbium) which reached end-of-life. Consider upgrading to an active LTS version likenode:iron-alpine(v20) ornode:hydrogen-alpine(v18). -
The configuration script might fail if Keycloak isn't ready when the script runs. Consider adding a health check.
-
The
restart: nonepolicy means we won't retry on failure. Consider usingon-failurewith a maximum retry count.
Here's the suggested fix:
shlp-keycloak-config-importer:
- image: node:erbium-alpine
+ image: node:iron-alpine
networks:
public:
environment:
KEYCLOAK_ADMIN: ${KEYCLOAK_ADMIN}
KEYCLOAK_ADMIN_PASSWORD: ${KEYCLOAK_ADMIN_PASSWORD}
NEXTAUTH_URL: ${SHLP_NEXTAUTH_URL}
KEYCLOAK_CLIENT_SECRET: ${SHLP_KEYCLOAK_CLIENT_SECRET}
- command: sh -c "node keycloakConfig.js"
+ command: sh -c "wget --wait=30 --tries=10 --retry-connrefused http://keycloak:8080/health/ready && node keycloakConfig.js"
configs:
- source: keycloakConfig.js
target: /keycloakConfig.js
- source: keycloak-realm.json
target: /keycloak-realm.json
deploy:
replicas: 1
restart_policy:
- condition: none
+ condition: on-failure
+ max_attempts: 3📝 Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| # container for executing config import scripts for creating the Keycloak Realm used for SHLP User Auth | |
| shlp-keycloak-config-importer: | |
| image: node:erbium-alpine | |
| networks: | |
| public: | |
| environment: | |
| KEYCLOAK_ADMIN: ${KEYCLOAK_ADMIN} | |
| KEYCLOAK_ADMIN_PASSWORD: ${KEYCLOAK_ADMIN_PASSWORD} | |
| NEXTAUTH_URL: ${SHLP_NEXTAUTH_URL} | |
| KEYCLOAK_CLIENT_SECRET: ${SHLP_KEYCLOAK_CLIENT_SECRET} | |
| command: sh -c "node keycloakConfig.js" | |
| configs: | |
| - source: keycloakConfig.js | |
| target: /keycloakConfig.js | |
| - source: keycloak-realm.json | |
| target: /keycloak-realm.json | |
| deploy: | |
| replicas: 1 | |
| restart_policy: | |
| condition: none | |
| # container for executing config import scripts for creating the Keycloak Realm used for SHLP User Auth | |
| shlp-keycloak-config-importer: | |
| image: node:iron-alpine | |
| networks: | |
| public: | |
| environment: | |
| KEYCLOAK_ADMIN: ${KEYCLOAK_ADMIN} | |
| KEYCLOAK_ADMIN_PASSWORD: ${KEYCLOAK_ADMIN_PASSWORD} | |
| NEXTAUTH_URL: ${SHLP_NEXTAUTH_URL} | |
| KEYCLOAK_CLIENT_SECRET: ${SHLP_KEYCLOAK_CLIENT_SECRET} | |
| command: sh -c "wget --wait=30 --tries=10 --retry-connrefused http://keycloak:8080/health/ready && node keycloakConfig.js" | |
| configs: | |
| - source: keycloakConfig.js | |
| target: /keycloakConfig.js | |
| - source: keycloak-realm.json | |
| target: /keycloak-realm.json | |
| deploy: | |
| replicas: 1 | |
| restart_policy: | |
| condition: on-failure | |
| max_attempts: 3 |
| environment: | ||
| KEYCLOAK_ADMIN: ${KEYCLOAK_ADMIN} | ||
| KEYCLOAK_ADMIN_PASSWORD: ${KEYCLOAK_ADMIN_PASSWORD} | ||
| NEXTAUTH_URL: ${SHLP_NEXTAUTH_URL} | ||
| KEYCLOAK_CLIENT_SECRET: ${SHLP_KEYCLOAK_CLIENT_SECRET} |
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💡 Codebase verification
Environment variables need documentation and secure handling
Based on the verification results:
- The environment variables
KEYCLOAK_ADMIN,KEYCLOAK_ADMIN_PASSWORD,SHLP_NEXTAUTH_URL, andSHLP_KEYCLOAK_CLIENT_SECRETare used but not properly documented - Sensitive credentials (
SHLP_KEYCLOAK_CLIENT_SECRET) are hardcoded in the.envfile - No
.env.examplefile exists to guide users on required variables
Recommendations:
- Create an
.env.examplefile with placeholder values and descriptions for all required variables - Remove hardcoded secrets from source control
- Document all environment variables in the project's documentation
🔗 Analysis chain
Verify environment variable documentation and security
Please ensure that all required environment variables are properly documented and that sensitive variables (especially KEYCLOAK_ADMIN_PASSWORD and SHLP_KEYCLOAK_CLIENT_SECRET) are handled securely.
🏁 Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash
# Check for environment variable documentation
echo "Checking for environment variable documentation..."
# Look for environment variable documentation in common locations
fd -t f -e md -e env -e yaml -e yml . | xargs rg -l "KEYCLOAK_ADMIN|KEYCLOAK_ADMIN_PASSWORD|SHLP_NEXTAUTH_URL|SHLP_KEYCLOAK_CLIENT_SECRET"
# Check for any potential hardcoded secrets
echo "Checking for hardcoded secrets..."
rg -i "password|secret|key" --type yaml --type env
Length of output: 707
Script:
#!/bin/bash
# Let's check the content of the found files for environment variables and their documentation
echo "=== Checking smart-health-links-portal.env ==="
cat smart-health-links-portal.env || true
echo -e "\n=== Checking docker-compose files ==="
cat smart-health-links-portal/importer/docker-compose.keycloak.yml
echo -e "\n---"
cat smart-health-links-portal/docker-compose.yml
echo -e "\n---"
cat identity-access-manager-keycloak/docker-compose.yml
echo -e "\n=== Checking for README or documentation files ==="
fd -t f "README" -e md
Length of output: 8559
Script:
#!/bin/bash
# Let's check the main README and documentation for environment variable documentation
echo "=== Checking main README ==="
cat README.md
echo -e "\n=== Checking documentation for environment setup ==="
cat documentation/README.md 2>/dev/null || true
cat "documentation/README (1).md" 2>/dev/null || true
# Let's also check for any .env.example files that might document the variables
echo -e "\n=== Checking for .env.example files ==="
fd -t f ".env.example"
Length of output: 12101
| "smtpServer": { | ||
| "replyToDisplayName": "", | ||
| "starttls": "false", | ||
| "auth": "", | ||
| "port": "1025", | ||
| "host": "mail-catcher", | ||
| "replyTo": "", | ||
| "from": "[email protected]", | ||
| "fromDisplayName": "Authenticator", | ||
| "envelopeFrom": "", | ||
| "ssl": "false" | ||
| }, |
There was a problem hiding this comment.
Insecure SMTP Configuration
The current SMTP configuration is not suitable for production:
- Using non-standard port 1025
- SSL/TLS is disabled
- No authentication configured
- Generic from address
Secure the SMTP configuration for production:
"smtpServer": {
"replyToDisplayName": "",
- "starttls": "false",
+ "starttls": "true",
- "auth": "",
+ "auth": "true",
- "port": "1025",
+ "port": "587",
"host": "mail-catcher",
"replyTo": "",
- "from": "[email protected]",
+ "from": "${env.SMTP_FROM_ADDRESS}",
"fromDisplayName": "Authenticator",
"envelopeFrom": "",
- "ssl": "false"
+ "ssl": "true"
}Committable suggestion skipped: line range outside the PR's diff.
| "secret": "<KEYCLOAK_CLIENT_SECRET>", | ||
| "redirectUris": ["<NEXTAUTH_URL>/api/auth/callback/keycloak"], | ||
| "webOrigins": ["<NEXTAUTH_URL>"], |
There was a problem hiding this comment.
Security Risk: Exposed Client Secret
The Keycloak client secret is directly embedded in the configuration file. This poses a security risk as secrets should not be committed to version control.
- Remove the hardcoded secret and use environment variables
- Ensure the redirect URIs and web origins are properly validated at deployment
- "secret": "<KEYCLOAK_CLIENT_SECRET>",
+ "secret": "${env.KEYCLOAK_CLIENT_SECRET}",Committable suggestion skipped: line range outside the PR's diff.
| const getAccessToken = async () => { | ||
| // Get an admin access token | ||
| const tokenOptions = { | ||
| hostname: keycloakUrl.replace('http://', '').replace('https://', ''), |
There was a problem hiding this comment.
🛠️ Refactor suggestion
Use the URL Module to Parse keycloakUrl Instead of String Manipulation
Manually stripping 'http://' and 'https://' from keycloakUrl can be error-prone and may not handle all possible URL formats. Use the built-in URL class to parse the URL properly.
Apply this diff to implement the change:
+const { URL } = require('url');
// Within each occurrence:
-hostname: keycloakUrl.replace('http://', '').replace('https://', ''),
+hostname: new URL(keycloakUrl).hostname,This change affects lines 64, 89, and 107.
Also applies to: 89-89, 107-107
| return accessToken.message.access_token; | ||
| } |
There was a problem hiding this comment.
Validate Access Token Before Returning
There is no check to ensure that accessToken.message.access_token exists before returning it. If it's undefined, subsequent code may fail unexpectedly. Add validation to handle this scenario.
Apply this diff to add validation:
return accessToken.message.access_token;
+if (!accessToken.message || !accessToken.message.access_token) {
+ throw new Error('Access token is undefined');
+}Committable suggestion skipped: line range outside the PR's diff.
| resolve({ | ||
| message: responseBody ? JSON.parse(responseBody) : null, | ||
| status: res.statusCode | ||
| }); | ||
| }); |
There was a problem hiding this comment.
Handle Possible JSON Parsing Errors in Response Processing
If the response body is not valid JSON, JSON.parse(responseBody) will throw an exception, resulting in an unhandled promise rejection. Add error handling to gracefully handle JSON parsing errors.
Apply this diff to fix the issue:
res.on('end', () => {
- resolve({
- message: responseBody ? JSON.parse(responseBody) : null,
- status: res.statusCode
- });
+ let parsedBody = null;
+ try {
+ parsedBody = responseBody ? JSON.parse(responseBody) : null;
+ } catch (e) {
+ return reject(new Error('Failed to parse JSON response'));
+ }
+ resolve({
+ message: parsedBody,
+ status: res.statusCode
+ });
});📝 Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| resolve({ | |
| message: responseBody ? JSON.parse(responseBody) : null, | |
| status: res.statusCode | |
| }); | |
| }); | |
| res.on('end', () => { | |
| let parsedBody = null; | |
| try { | |
| parsedBody = responseBody ? JSON.parse(responseBody) : null; | |
| } catch (e) { | |
| return reject(new Error('Failed to parse JSON response')); | |
| } | |
| resolve({ | |
| message: parsedBody, | |
| status: res.statusCode | |
| }); | |
| }); |
Summary by CodeRabbit
New Features
Documentation
Chores
.gitignoreto include new entries for development files and built binaries.