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Probably a false bug, as the input phenotypes may not have the entries without phenotypes but with genotypes. Since the GEBVs are computed within populations, and the entries without phenotypes will be assigned to an unknown population and therefore do not belong to any of the known populations.
The work-around would be to add a message telling the user to add the entries with unknown phenotypes into the phenotype file to correctly classify them as belonging to the correct population/s.
No description provided.
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