From 87ba4f9797db90e282596f5b87009983ba48a7cc Mon Sep 17 00:00:00 2001 From: jeffersonfparil Date: Mon, 24 Jun 2024 12:08:01 +1000 Subject: [PATCH] setting default to not remove phenotype outliers as we assume the user has taken steps to account for outliers in the phenotype data --- README.md | 2 +- inst/exec_Rscript/1-checks_and_submision.sh | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 62132d4..ef172dd 100644 --- a/README.md +++ b/README.md @@ -11,7 +11,7 @@ A streamlined interface to calculate the breeding values of entries in breeding ## Installation ```R -devtools::install_github("jeffersonfparil/gp", upgrade_dependencies=TRUE) +devtools::install_github("jeffersonfparil/gp", upgrade="always", force=TRUE) ``` ## Architecture diff --git a/inst/exec_Rscript/1-checks_and_submision.sh b/inst/exec_Rscript/1-checks_and_submision.sh index 27c2b1c..a373541 100755 --- a/inst/exec_Rscript/1-checks_and_submision.sh +++ b/inst/exec_Rscript/1-checks_and_submision.sh @@ -35,7 +35,7 @@ fi ### Install gp if not installed yet ### ####################################### echo "Checking if the R library gp exists and installing it, if not..." -Rscript -e 'if (!require("gp", character.only = TRUE)) {devtools::install_github("jeffersonfparil/gp", upgrade_dependencies=TRUE)}' +Rscript -e 'if (!require("gp", character.only = TRUE)) {devtools::install_github("jeffersonfparil/gp", upgrade="always", force=TRUE)}' ################################################################ ### TOP-LEVEL SLURM ARRAY JOB SUBMISSION SCRIPT ### Please edit the input variables below to match your dataset: