DESCRIPTION

Package: viewpoly
Title: A Shiny App to Visualize Genetic Maps and QTL Analysis in Polyploid Species
Version: 0.3.0
Authors@R: c(
           person(given = "Cristiane",
                  family = "Taniguti",
                  role = c("aut", "cre"),
                  email = "chtaniguti@tamu.edu"),
           person(given = "Gabriel",
                  family = "de Siqueira Gesteira",
                  role = c("aut"),
                  email = "gdesiqu@ncsu.edu"),
           person(given = "Jeekin",
                  family = "Lau",
                  role = c("ctb")),
           person(given = "Guilherme",
                  family = "da Silva Pereira",
                  role = c("ctb")),
           person(given = "David",
                  family = "Byrne",
                  role = c("ctb")),
           person(given = "Zhao-Bang",
                  family = "Zeng",
                  role = c("ctb")),   
           person(given = "Oscar",
                  family = "Riera-Lizarazu",
                  role = c("ctb")),
           person(given = "Marcelo",
                  family = "Mollinari",
                  role = c("aut"),
                  email = "mmollin@ncsu.edu")
           )
Maintainer: Cristiane Taniguti <chtaniguti@tamu.edu>
Description: Provides a graphical user interface to integrate, visualize and explore results 
            from linkage and quantitative trait loci analysis, together with genomic information for autopolyploid 
            species. The app is meant for interactive use and allows users to optionally upload different sources 
            of information, including  gene annotation and alignment files, enabling the exploitation and search for 
            candidate genes in a genome browser. In its current version, 'VIEWpoly' supports inputs from 'MAPpoly', 
            'polymapR', 'diaQTL', 'QTLpoly' and 'polyqtlR' packages. 
License: GPL (>= 3)
Depends:
    R (>= 4.0)
Imports: 
    shiny (>= 1.6.0),
    shinyjs,
    shinythemes,
    shinyWidgets,
    shinydashboard,
    config (>= 0.3.1),
    golem (>= 0.3.1),
    JBrowseR,
    dplyr,
    tidyr,
    DT,
    ggplot2,
    ggpubr,
    plotly,
    vroom,
    abind,
    reshape2,
    markdown,
    stats,
    rlang,
    pkgload,
    vdiffr
URL: https://github.com/mmollina/viewpoly
BugReports: https://github.com/mmollina/viewpoly/issues
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.2
Suggests: 
    testthat (>= 3.0.0),
    shinytest
Config/testthat/edition: 3
Language: en-US