NAMESPACE

importFrom(yaml, read_yaml)

importFrom(ape, read.tree)

importFrom(Biostrings, readDNAStringSet)
importFrom(Biostrings, readDNAMultipleAlignment)

importFrom(phyloseq, phyloseq)
importFrom(phyloseq, otu_table)
importFrom(phyloseq, tax_table)
importFrom(phyloseq, sample_data)
importFrom(phyloseq, phy_tree)
importFrom(phyloseq, rarefy_even_depth)

importFrom(Hmisc, list.tree)

importFrom(stats, as.dist)

importFrom(utils, read.csv, read.table, unzip)

importFrom(tools, toTitleCase)

importFrom(tidyr, separate)
importFrom(tidyr, `%>%`)
importFrom(tidyr, spread)
importFrom(tidyr, gather)
importFrom(tidyr, unite)

importFrom(dplyr, mutate)
importFrom(dplyr, select)
importFrom(dplyr, case_when)
importFrom(dplyr, if_else)
importFrom(dplyr, summarize)
importFrom(dplyr, group_by)
importFrom(dplyr, ungroup)

importFrom(data.table, data.table)

importFrom(tibble, rownames_to_column)
importFrom(tibble, column_to_rownames)

importFrom(Matrix, sparseMatrix)

importFrom(rhdf5, h5read)

importFrom(zCompositions, cmultRepl)

importFrom(DT, datatable)

importFrom(ggplot2, ggplot)
importFrom(ggplot2, aes)
importFrom(ggplot2, geom_tile)
importFrom(ggplot2, geom_bar)
importFrom(ggplot2, theme)
importFrom(ggplot2, element_text)
importFrom(ggplot2, coord_cartesian)
importFrom(ggplot2, xlab)
importFrom(ggplot2, ylab)
importFrom(ggplot2, scale_fill_viridis_c)

export(read_qza)
export(qza_to_phyloseq)
export(qza_to_tse)
export(print_provenance)
export(read_q2metadata)
export(is_q2metadata)
export(parse_taxonomy)
export(parse_ordination)
export(write_q2manifest)
export(theme_q2r)
export(read_q2biom)
export(make_clr)
export(make_percent)
export(make_proportion)
export(interactive_table)
export(summarize_taxa)
export(taxa_barplot)
export(taxa_heatmap)
export(decode_golay)
export(corner)
export(min_nonzero)
export(subsample_table)
export(filter_features)
export(mean_sd)