forked from lh3/minimap2
-
Notifications
You must be signed in to change notification settings - Fork 0
/
ksort.h
153 lines (136 loc) · 5.02 KB
/
ksort.h
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
/* The MIT License
Copyright (c) 2008, 2011 Attractive Chaos <[email protected]>
Permission is hereby granted, free of charge, to any person obtaining
a copy of this software and associated documentation files (the
"Software"), to deal in the Software without restriction, including
without limitation the rights to use, copy, modify, merge, publish,
distribute, sublicense, and/or sell copies of the Software, and to
permit persons to whom the Software is furnished to do so, subject to
the following conditions:
The above copyright notice and this permission notice shall be
included in all copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS
BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.
*/
// This is a simplified version of ksort.h
#ifndef AC_KSORT_H
#define AC_KSORT_H
#include <stdlib.h>
#include <string.h>
#include <assert.h>
typedef struct {
void *left, *right;
int depth;
} ks_isort_stack_t;
#define KSORT_SWAP(type_t, a, b) { type_t t=(a); (a)=(b); (b)=t; }
#define KSORT_INIT(name, type_t, __sort_lt) \
void ks_heapdown_##name(size_t i, size_t n, type_t l[]) \
{ \
size_t k = i; \
type_t tmp = l[i]; \
while ((k = (k << 1) + 1) < n) { \
if (k != n - 1 && __sort_lt(l[k], l[k+1])) ++k; \
if (__sort_lt(l[k], tmp)) break; \
l[i] = l[k]; i = k; \
} \
l[i] = tmp; \
} \
void ks_heapmake_##name(size_t lsize, type_t l[]) \
{ \
size_t i; \
for (i = (lsize >> 1) - 1; i != (size_t)(-1); --i) \
ks_heapdown_##name(i, lsize, l); \
} \
type_t ks_ksmall_##name(size_t n, type_t arr[], size_t kk) \
{ \
type_t *low, *high, *k, *ll, *hh, *mid; \
low = arr; high = arr + n - 1; k = arr + kk; \
for (;;) { \
if (high <= low) return *k; \
if (high == low + 1) { \
if (__sort_lt(*high, *low)) KSORT_SWAP(type_t, *low, *high); \
return *k; \
} \
mid = low + (high - low) / 2; \
if (__sort_lt(*high, *mid)) KSORT_SWAP(type_t, *mid, *high); \
if (__sort_lt(*high, *low)) KSORT_SWAP(type_t, *low, *high); \
if (__sort_lt(*low, *mid)) KSORT_SWAP(type_t, *mid, *low); \
KSORT_SWAP(type_t, *mid, *(low+1)); \
ll = low + 1; hh = high; \
for (;;) { \
do ++ll; while (__sort_lt(*ll, *low)); \
do --hh; while (__sort_lt(*low, *hh)); \
if (hh < ll) break; \
KSORT_SWAP(type_t, *ll, *hh); \
} \
KSORT_SWAP(type_t, *low, *hh); \
if (hh <= k) low = ll; \
if (hh >= k) high = hh - 1; \
} \
} \
#define ks_ksmall(name, n, a, k) ks_ksmall_##name(n, a, k)
#define ks_lt_generic(a, b) ((a) < (b))
#define ks_lt_str(a, b) (strcmp((a), (b)) < 0)
typedef const char *ksstr_t;
#define KSORT_INIT_GENERIC(type_t) KSORT_INIT(type_t, type_t, ks_lt_generic)
#define KSORT_INIT_STR KSORT_INIT(str, ksstr_t, ks_lt_str)
#define RS_MIN_SIZE 64
#define RS_MAX_BITS 8
#define KRADIX_SORT_INIT(name, rstype_t, rskey, sizeof_key) \
typedef struct { \
rstype_t *b, *e; \
} rsbucket_##name##_t; \
void rs_insertsort_##name(rstype_t *beg, rstype_t *end) \
{ \
rstype_t *i; \
for (i = beg + 1; i < end; ++i) \
if (rskey(*i) < rskey(*(i - 1))) { \
rstype_t *j, tmp = *i; \
for (j = i; j > beg && rskey(tmp) < rskey(*(j-1)); --j) \
*j = *(j - 1); \
*j = tmp; \
} \
} \
void rs_sort_##name(rstype_t *beg, rstype_t *end, int n_bits, int s) \
{ \
rstype_t *i; \
int size = 1<<n_bits, m = size - 1; \
rsbucket_##name##_t *k, b[1<<RS_MAX_BITS], *be = b + size; \
assert(n_bits <= RS_MAX_BITS); \
for (k = b; k != be; ++k) k->b = k->e = beg; \
for (i = beg; i != end; ++i) ++b[rskey(*i)>>s&m].e; \
for (k = b + 1; k != be; ++k) \
k->e += (k-1)->e - beg, k->b = (k-1)->e; \
for (k = b; k != be;) { \
if (k->b != k->e) { \
rsbucket_##name##_t *l; \
if ((l = b + (rskey(*k->b)>>s&m)) != k) { \
rstype_t tmp = *k->b, swap; \
do { \
swap = tmp; tmp = *l->b; *l->b++ = swap; \
l = b + (rskey(tmp)>>s&m); \
} while (l != k); \
*k->b++ = tmp; \
} else ++k->b; \
} else ++k; \
} \
for (b->b = beg, k = b + 1; k != be; ++k) k->b = (k-1)->e; \
if (s) { \
s = s > n_bits? s - n_bits : 0; \
for (k = b; k != be; ++k) \
if (k->e - k->b > RS_MIN_SIZE) rs_sort_##name(k->b, k->e, n_bits, s); \
else if (k->e - k->b > 1) rs_insertsort_##name(k->b, k->e); \
} \
} \
void radix_sort_##name(rstype_t *beg, rstype_t *end) \
{ \
if (end - beg <= RS_MIN_SIZE) rs_insertsort_##name(beg, end); \
else rs_sort_##name(beg, end, RS_MAX_BITS, (sizeof_key - 1) * RS_MAX_BITS); \
}
#endif