A BioRuby-based bioinformatics course (still under-development - not recommended for ANY purpose!)
Download the VM Ware image that has additional software such as Komodo edit and BlazeGraph installed (see instructions below)
Dear Students,
You will take this course using a VMWare Virtual Machine. You should do the following:
- CREATE AN ACCOUNT ON GitHub (this website) if you haven't already got one...
- Download VMWare Player (if you haven't already got it): https://my.vmware.com/web/vmware/free#desktop_end_user_computing/vmware_workstation_player/14_0
- You should download the VMWare Virtual Machine that I have created for this course, which is in this Zenodo deposit: https://doi.org/10.5281/zenodo.1147435
- Unzip the virtual machine
- Start VMWare Player and select the virtual machine - start it (PASSWORD IS osboxes.org)
- In the top-right corner of the VM Desktop, you can select either US-style or Spanish-style keyboard
- Browse to: https://github.com/CBGP-UPM-INIA-PUBLIC/Bioinfo_ProgrammingChallenges
- In the top-right corner, click "Fork", to make a copy of this repository in your own GitHub account
- Browse to the copy in your GitHub account (you should already be there after Forking)
- Click the big green "Clone" button and copy the address to your clipboard
- open a terminal window in your Virtual Machine
- type:
git clone http://github.com/yoruaccountname/UPM_BioinformaticsCourse.git(whatever you copied in step 9) - after it is cloned, cd into the "Lectures" folder and type
jupyter notebookto start the interactive Jupyter session - Browse to Lesson 1 and... let's get started!