This repository has been archived by the owner on Jul 11, 2023. It is now read-only.
-
Notifications
You must be signed in to change notification settings - Fork 1
/
Copy pathhistology_config_final_run.yaml
143 lines (143 loc) · 2.59 KB
/
histology_config_final_run.yaml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
head:
primer:
analog_inputs:
low: 0
high: 8
channel: 0
quad1:
analog_inputs:
low: 1
high: 9
channel: 1
quad2:
analog_inputs:
low: 2
high: 10
channel: 2
quad3:
analog_inputs:
low: 3
high: 11
channel: 3
quad4:
analog_inputs:
low: 4
high: 12
channel: 4
quad5:
analog_inputs:
low: 5
high: 13
channel: 5
quad6:
analog_inputs:
low: 6
high: 14
channel: 6
system:
channel: 7
manifold:
block:
channel: 9
primary:
channel: 10
pbst:
channel: 13
secondary:
channel: 11
pbs:
channel: 12
aspirate:
channel: 8
seperate:
channel: 20
setup_duration: 20
system_prime_count: 1
prime_duration: 10
prime_aspirate_duration: 15
fill_duration_full: 20
dispense_duration_full: 6
dispense_duration_on: 0.25
dispense_duration_off: 1
chemical_aspirate_duration: 40
chemical_separate_duration: 40
shake_speed_min: &shake_speed_min 200
shake_speed_max: &shake_speed_max 3000
aspirate_shake_speed: 200
separate_shake_speed: 200
inter_dispense_shake_speed: 400
inter_dispense_shake_duration: 10
shake_duration_min: 10
shake_attempts: 2
post_shake_off_duration: 5
adc_sample_count: 11
fill_duration_all_cylinders: 400
fill_duration_one_cylinder: 150
volume_crossover: 6
volume_max: 10
volume_threshold_initial: 1.0
pre_cylinder_fill_duration: 2
post_cylinder_fill_duration: 4
balance_zero_duration: 4
protocol:
- chemical: pbs
prime_count: 1
dispense_volume: 0
shake_speed: 500
shake_duration: 0
post_shake_duration: 0
aspirate: false
repeat: 0
- chemical: block
prime_count: 1
dispense_volume: 6
shake_speed: 500
shake_duration: 1800
#shake_duration: 10
post_shake_duration: 5
aspirate: true
repeat: 0
- chemical: primary
prime_count: 1
dispense_volume: 6
shake_speed: 500
shake_duration: 7200
#shake_duration: 10
post_shake_duration: 5
aspirate: true
repeat: 0
- chemical: pbst
prime_count: 1
dispense_volume: 6
shake_speed: 500
shake_duration: 480
#shake_duration: 10
post_shake_duration: 5
aspirate: true
repeat: 5
- chemical: secondary
prime_count: 1
dispense_volume: 6
shake_speed: 500
shake_duration: 7200
#shake_duration: 10
post_shake_duration: 5
aspirate: true
repeat: 0
- chemical: pbs
prime_count: 1
dispense_volume: 6
shake_speed: 500
shake_duration: 480
#shake_duration: 10
post_shake_duration: 5
aspirate: true
repeat: 5
- chemical: pbs
prime_count: 0
dispense_volume: 6
shake_speed: 500
shake_duration: 0
post_shake_duration: 100000
aspirate: false
repeat: 0