diff --git a/README.md b/README.md index 7389e8fa1..55d864b22 100644 --- a/README.md +++ b/README.md @@ -50,3 +50,19 @@ Tasks we support and approaches for those tasks: - Semantic segmentation - Signed distances - One-hot encoding of different types of objects + +## Helpful Resources & Tools + - Chunked data, zarr, and n5 + - OME-Zarr: a cloud-optimized bioimaging file format with international community support (doi: [10.1101/2023.02.17.528834](https://pubmed.ncbi.nlm.nih.gov/36865282/)) + - Videos about N5 and Fiji can be found in [this playlist](https://www.youtube.com/playlist?list=PLmZHHIZ9Gz-IJA7HtW8quZcuLViz9Em6e). For other questions, join the discussion on the [Image.sc forum](https://forum.image.sc/tag/n5). + - [N5 plugins for Fiji](https://openorganelle.janelia.org/news/2023-02-06-n5-plugins-for-fiji) + - Script for converting [tif to zarr](https://github.com/yuriyzubov/tif-to-zarr) + - CellMap Models + - [GitHub Repo](https://github.com/janelia-cellmap/cellmap-models) of published models + - [OpenOrganelle.org](https://openorganelle.janelia.org) + - Example of [unprocessed distance predictions](https://tinyurl.com/3kw2tuab) + - Example of [refined segmentations](https://tinyurl.com/k59pba98) that have undergone post-processing (e.g., thresholding, masking, smoothing) + - Example of [groundtruth data](https://tinyurl.com/pu8mespz) + - Visualization + - [Neuroglancer GitHub Repo](https://github.com/google/neuroglancer) +