diff --git a/docs/source/cosem_starter.rst b/docs/source/cosem_starter.rst index e7d8da980..e4739dc2c 100644 --- a/docs/source/cosem_starter.rst +++ b/docs/source/cosem_starter.rst @@ -56,7 +56,7 @@ Example: Full Example ------------ -Here’s how the complete setup looks: +Here's how the complete setup looks: .. code-block:: python @@ -81,19 +81,52 @@ Available COSEM Pretrained Models Below is a table of the COSEM pretrained models available, along with their details: -+-----------+----------------------------+-----------------+--------------------------------------------------------------+-----------+------------+-----------------+ -| Model | Checkpoints | Best Checkpoint| Classes | Input Res | Output Res | Model | -+===========+============================+=================+==============================================================+===========+============+=================+ -| setup04 | 975000, 625000, 1820500 | 1820500 | ecs, pm, mito, mito_mem, ves, ves_mem, endo, endo_mem, er, er_mem, eres, nuc, mt, mt_out | 8 nm | 4 nm | Upsample U-Net | -+-----------+----------------------------+-----------------+--------------------------------------------------------------+-----------+------------+-----------------+ -| setup26.1 | 650000, 2580000 | 2580000 | mito, mito_mem, mito_ribo | 8 nm | 4 nm | Upsample U-Net | -+-----------+----------------------------+-----------------+--------------------------------------------------------------+-----------+------------+-----------------+ -| setup28 | 775000 | 775000 | er, er_mem | 8 nm | 4 nm | Upsample U-Net | -+-----------+----------------------------+-----------------+--------------------------------------------------------------+-----------+------------+-----------------+ -| setup36 | 500000, 1100000 | 1100000 | nuc, nucleo | 8 nm | 4 nm | Upsample U-Net | -+-----------+----------------------------+-----------------+--------------------------------------------------------------+-----------+------------+-----------------+ -| setup45 | 625000, 1634500 | 1634500 | ecs, pm | 4 nm | 4 nm | U-Net | -+-----------+----------------------------+-----------------+--------------------------------------------------------------+-----------+------------+-----------------+ +.. list-table:: Available COSEM Pretrained Models + :header-rows: 1 + + * - Model + - Checkpoints + - Best Checkpoint + - Classes + - Input Res + - Output Res + - Model + * - setup04 + - 975000, 625000, 1820500 + - 1820500 + - ecs, pm, mito, mito_mem, ves, ves_mem, endo, endo_mem, er, er_mem, eres, nuc, mt, mt_out + - 8 nm + - 4 nm + - Upsample U-Net + * - setup26.1 + - 650000, 2580000 + - 2580000 + - mito, mito_mem, mito_ribo + - 8 nm + - 4 nm + - Upsample U-Net + * - setup28 + - 775000 + - 775000 + - er, er_mem + - 8 nm + - 4 nm + - Upsample U-Net + * - setup36 + - 500000, 1100000 + - 1100000 + - nuc, nucleo + - 8 nm + - 4 nm + - Upsample U-Net + * - setup45 + - 625000, 1634500 + - 1634500 + - ecs, pm + - 4 nm + - 4 nm + - U-Net + Notes -----