diff --git a/examples/distance_task/finetune_liver_peroxisome.md b/examples/distance_task/finetune_liver_peroxisome.md index 3c2f14e68..95d2bd5c1 100644 --- a/examples/distance_task/finetune_liver_peroxisome.md +++ b/examples/distance_task/finetune_liver_peroxisome.md @@ -13,6 +13,29 @@ DaCapo has 4 major configurable components: These are then combined in a single **dacapo.experiments.Run** that includes your starting point (whether you want to start training from scratch or continue off of a previously trained model) and stopping criterion (the number of iterations you want to train). +## Environment setup +If you have not already done so, you will need to install DaCapo. We recommend you do this by first creating a new environment and then installing DaCapo using pip. + +```bash +conda create -n dacapo python=3.10 +conda activate dacapo +``` + +Then, you can install DaCapo using pip, via GitHub: + +```bash +pip install git+https://github.com/janelia-cellmap/dacapo.git +``` + +Or you can clone the repository and install it locally: + +```bash +git clone https://github.com/janelia-cellmap/dacapo.git +cd dacapo +pip install -e . +``` + + ## Config Store To define where the data goes, create a dacapo.yaml configuration file. Here is a template: