pyproject.toml

[build-system]
build-backend = "setuptools.build_meta"
requires = ["setuptools", "wheel"]

[project]
name = "cellmap-models"
description = "Repository of model architectures and network weights used for CellMap segmentations."
readme = "README.md"
requires-python = ">=3.7"
classifiers = [
  "Programming Language :: Python :: 3",
]
keywords = ["machine learning", "deep learning", "cell segmentation", "cellpose", "cellmap"]
license = { text = "BSD 3-Clause License" }
authors = [
    { email = "rhoadesj@hhmi.org", name = "Jeff Rhoades" },
]
version = "0.1.0"
dependencies = [
  'torch',
  'torchvision',
  'numpy',
  'tqdm',
  'cellpose',
  'ml-collections',
]

[project.optional-dependencies]
dev = [
  'pytest',
  'pytest-cov',
  'pytest-mock',
  'black',
  'mypy',
  'pdoc',
  'pre-commit',
]
pretrained = ['cellpose[gui]']
all = ["cellmap-models[dev,pretrained]"]

[project.urls]
homepage = "https://janelia-cellmap.github.io/cellmap-models"
repository = "https://github.com/janelia-cellmap/cellmap-models"

[tool.mypy]
exclude = ['setup*']
ignore_missing_imports = true

[project.scripts]
"cellmap.add_cellpose" = "cellmap_models.pytorch.cellpose:add_model"