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<!--?xml version="1.0" encoding="UTF-8"?-->
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<link href="./lode-document_files/lode_files/owl.css" rel="stylesheet" type="text/css">
<link href="./lode-document_files/lode_files/Primer.css" rel="stylesheet" type="text/css">
<link href="./lode-document_files/lode_files/rec.css" rel="stylesheet" type="text/css">
<link href="./lode-document_files/lode_files/extra.css" rel="stylesheet" type="text/css">
<link rel="shortcut icon" href="./lode-document_files/lode_files/favicon.ico">
<script src="./lode-document_files/lode_files/jquery.js"></script>
<script src="./lode-document_files/lode_files/jquery.scrollTo.js"></script>
<script src="./lode-document_files/lode_files/marked.min.js"></script>
<script>
$(document).ready(
function () {
jQuery(".markdown").each(function(el){
jQuery(this).after(marked(jQuery(this).text())).remove()});
var list = $('a[name="../sbol-vo.rdf"]');
if (list.size() != 0) {
var element = list.first();
$.scrollTo(element);
}
});
</script>
</head>
<body>
<div class="head">
<dl>
<dt>
IRI:
</dt>
<dd>
http://sbols.org/visual/v3
</dd>
</dl>
</div>
<hr>
<div id="toc">
<h2>Table of Content</h2>
<ol>
<li><a href="#classes">Classes</a></li>
<li><a href="#objectproperties">Object Properties</a></li>
<li><a href="#annotationproperties">Annotation Properties</a></li>
<li><a href="#namespacedeclarations">Namespace Declarations</a></li>
</ol>
</div>
<div id="classes">
<h2>Classes</h2>
<ul class="hlist">
<li><a href="#AptamerGlyph" title="#AptamerGlyph">AptamerGlyph</a></li>
<li><a href="#AssemblyScarGlyph" title="#AssemblyScarGlyph">AssemblyScarGlyph</a></li>
<li><a href="#AssemblyScarGlyphAlternative" title="#AssemblyScarGlyphAlternative">AssemblyScarGlyphAlternative</a></li>
<li><a href="#BiopolymerLocationGlyph" title="#BiopolymerLocationGlyph">BiopolymerLocationGlyph</a></li>
<li><a href="#BluntRestrictionSiteGlyph" title="#BluntRestrictionSiteGlyph">BluntRestrictionSiteGlyph</a></li>
<li><a href="#CDSGlyph" title="#CDSGlyph">CDSGlyph</a></li>
<li><a href="#CDSGlyphAlternative" title="#CDSGlyphAlternative">CDSGlyphAlternative</a></li>
<li><a href="#ChromosomalLocusGlyph" title="#ChromosomalLocusGlyph">ChromosomalLocusGlyph</a></li>
<li><a href="#CircularPlasmidGlyph" title="#CircularPlasmidGlyph">CircularPlasmidGlyph</a></li>
<li><a href="#CleavageSiteGlyph" title="#CleavageSiteGlyph">CleavageSiteGlyph</a></li>
<li><a href="#ComplexGlyph" title="#ComplexGlyph">ComplexGlyph</a></li>
<li><a href="#ComplexGlyphAlternative" title="#ComplexGlyphAlternative">ComplexGlyphAlternative</a></li>
<li><a href="#CompositeGlyph" title="#CompositeGlyph">CompositeGlyph</a></li>
<li><a href="#ControlGlyph" title="#ControlGlyph">ControlGlyph</a></li>
<li><a href="#DegradationGlyph" title="#DegradationGlyph">DegradationGlyph</a></li>
<li><a href="#DnaBiopolymerLocationGlyph" title="#DnaBiopolymerLocationGlyph">DnaBiopolymerLocationGlyph</a></li>
<li><a href="#DnaBiopolymerLocationGlyphAlternative" title="#DnaBiopolymerLocationGlyphAlternative">DnaBiopolymerLocationGlyphAlternative</a></li>
<li><a href="#DnaCleavageSiteGlyph" title="#DnaCleavageSiteGlyph">DnaCleavageSiteGlyph</a></li>
<li><a href="#DnaStabilityElementGlyph" title="#DnaStabilityElementGlyph">DnaStabilityElementGlyph</a></li>
<li><a href="#Double-StrandedNucleicAcidGlyph" title="#Double-StrandedNucleicAcidGlyph">Double-StrandedNucleicAcidGlyph</a></li>
<li><a href="#Double-StrandedNucleicAcidGlyphAlternative" title="#Double-StrandedNucleicAcidGlyphAlternative">Double-StrandedNucleicAcidGlyphAlternative</a></li>
<li><a href="#EngineeredRegionGlyph" title="#EngineeredRegionGlyph">EngineeredRegionGlyph</a></li>
<li><a href="#FivePrimeOverhangSiteGlyph" title="#FivePrimeOverhangSiteGlyph">FivePrimeOverhangSiteGlyph</a></li>
<li><a href="#FivePrimeOverhangSiteGlyphAlternative" title="#FivePrimeOverhangSiteGlyphAlternative">FivePrimeOverhangSiteGlyphAlternative</a></li>
<li><a href="#FivePrimeStickyEndRestrictionEnzymeCleavageSiteGlyph" title="#FivePrimeStickyEndRestrictionEnzymeCleavageSiteGlyph">FivePrimeStickyEndRestrictionEnzymeCleavageSiteGlyph</a></li>
<li><a href="#FivePrimeStickyEndRestrictionEnzymeCleavageSiteGlyphAlternative" title="#FivePrimeStickyEndRestrictionEnzymeCleavageSiteGlyphAlternative">FivePrimeStickyEndRestrictionEnzymeCleavageSiteGlyphAlternative</a></li>
<li><a href="#Glyph" title="#Glyph">Glyph</a></li>
<li><a href="#HexagonSimpleChemicalGlyph" title="#HexagonSimpleChemicalGlyph">HexagonSimpleChemicalGlyph</a></li>
<li><a href="#InertDNASpacerGlyph" title="#InertDNASpacerGlyph">InertDNASpacerGlyph</a></li>
<li><a href="#InhibitionGlyph" title="#InhibitionGlyph">InhibitionGlyph</a></li>
<li><a href="#InteractionGlyph" title="#InteractionGlyph">InteractionGlyph</a></li>
<li><a href="#InteractionNodeGlyph" title="#InteractionNodeGlyph">InteractionNodeGlyph</a></li>
<li><a href="#IntronGlyph" title="#IntronGlyph">IntronGlyph</a></li>
<li><a href="#MacromoleculeGlyph" title="#MacromoleculeGlyph">MacromoleculeGlyph</a></li>
<li><a href="#MolecularSpeciesGlyph" title="#MolecularSpeciesGlyph">MolecularSpeciesGlyph</a></li>
<li><a href="#NoGlyphAssignedGlyph" title="#NoGlyphAssignedGlyph">NoGlyphAssignedGlyph</a></li>
<li><a href="#NoGlyphAssignedSpeciesGlyph" title="#NoGlyphAssignedSpeciesGlyph">NoGlyphAssignedSpeciesGlyph</a></li>
<li><a href="#Non-CodingRNAGeneGlyph" title="#Non-CodingRNAGeneGlyph">Non-CodingRNAGeneGlyph</a></li>
<li><a href="#OmittedDetailGlyph" title="#OmittedDetailGlyph">OmittedDetailGlyph</a></li>
<li><a href="#OperatorBindingSiteGlyph" title="#OperatorBindingSiteGlyph">OperatorBindingSiteGlyph</a></li>
<li><a href="#OriginofReplicationGlyph" title="#OriginofReplicationGlyph">OriginofReplicationGlyph</a></li>
<li><a href="#OriginofTransferGlyph" title="#OriginofTransferGlyph">OriginofTransferGlyph</a></li>
<li><a href="#OverhangSiteGlyph" title="#OverhangSiteGlyph">OverhangSiteGlyph</a></li>
<li><a href="#PentagonSimpleChemicalGlyph" title="#PentagonSimpleChemicalGlyph">PentagonSimpleChemicalGlyph</a></li>
<li><a href="#PolyASiteGlyph" title="#PolyASiteGlyph">PolyASiteGlyph</a></li>
<li><a href="#PolypeptideRegionGlyph" title="#PolypeptideRegionGlyph">PolypeptideRegionGlyph</a></li>
<li><a href="#PrimerBindingSiteGlyph" title="#PrimerBindingSiteGlyph">PrimerBindingSiteGlyph</a></li>
<li><a href="#ProcessGlyph" title="#ProcessGlyph">ProcessGlyph</a></li>
<li><a href="#PromoterSiteGlyph" title="#PromoterSiteGlyph">PromoterSiteGlyph</a></li>
<li><a href="#ProteinBiopolymerLocationGlyph" title="#ProteinBiopolymerLocationGlyph">ProteinBiopolymerLocationGlyph</a></li>
<li><a href="#ProteinBiopolymerLocationGlyphAlternative" title="#ProteinBiopolymerLocationGlyphAlternative">ProteinBiopolymerLocationGlyphAlternative</a></li>
<li><a href="#ProteinCleavageSiteGlyph" title="#ProteinCleavageSiteGlyph">ProteinCleavageSiteGlyph</a></li>
<li><a href="#ProteinGlyph" title="#ProteinGlyph">ProteinGlyph</a></li>
<li><a href="#ProteinGuideRnaComplexGlyph" title="#ProteinGuideRnaComplexGlyph">ProteinGuideRnaComplexGlyph</a></li>
<li><a href="#ProteinProteinComplexGlyph" title="#ProteinProteinComplexGlyph">ProteinProteinComplexGlyph</a></li>
<li><a href="#ProteinSmallMoleculeComplexGlyph" title="#ProteinSmallMoleculeComplexGlyph">ProteinSmallMoleculeComplexGlyph</a></li>
<li><a href="#ProteinStabilityElementGlyph" title="#ProteinStabilityElementGlyph">ProteinStabilityElementGlyph</a></li>
<li><a href="#RibosomeEntrySiteGlyph" title="#RibosomeEntrySiteGlyph">RibosomeEntrySiteGlyph</a></li>
<li><a href="#RnaBiopolymerLocationGlyph" title="#RnaBiopolymerLocationGlyph">RnaBiopolymerLocationGlyph</a></li>
<li><a href="#RnaBiopolymerLocationGlyphAlternative" title="#RnaBiopolymerLocationGlyphAlternative">RnaBiopolymerLocationGlyphAlternative</a></li>
<li><a href="#RnaCleavageSiteGlyph" title="#RnaCleavageSiteGlyph">RnaCleavageSiteGlyph</a></li>
<li><a href="#RnaStabilityElementGlyph" title="#RnaStabilityElementGlyph">RnaStabilityElementGlyph</a></li>
<li><a href="#SequenceFeatureGlyph" title="#SequenceFeatureGlyph">SequenceFeatureGlyph</a></li>
<li><a href="#SignatureGlyph" title="#SignatureGlyph">SignatureGlyph</a></li>
<li><a href="#SimpleChemicalGlyph" title="#SimpleChemicalGlyph">SimpleChemicalGlyph</a></li>
<li><a href="#SimpleChemicalGlyphAlternative" title="#SimpleChemicalGlyphAlternative">SimpleChemicalGlyphAlternative</a></li>
<li><a href="#Single-StrandedNucleicAcidGlyph" title="#Single-StrandedNucleicAcidGlyph">Single-StrandedNucleicAcidGlyph</a></li>
<li><a href="#Single-StrandedNucleicAcidGlyphAlternative" title="#Single-StrandedNucleicAcidGlyphAlternative">Single-StrandedNucleicAcidGlyphAlternative</a></li>
<li><a href="#SpecificRecombinationSiteGlyph" title="#SpecificRecombinationSiteGlyph">SpecificRecombinationSiteGlyph</a></li>
<li><a href="#StabilityElementGlyph" title="#StabilityElementGlyph">StabilityElementGlyph</a></li>
<li><a href="#StickyEndRestrictionEnzymeCleavageSiteGlyph" title="#StickyEndRestrictionEnzymeCleavageSiteGlyph">StickyEndRestrictionEnzymeCleavageSiteGlyph</a></li>
<li><a href="#StimulationGlyph" title="#StimulationGlyph">StimulationGlyph</a></li>
<li><a href="#StopSiteGlyph" title="#StopSiteGlyph">StopSiteGlyph</a></li>
<li><a href="#TerminatorGlyph" title="#TerminatorGlyph">TerminatorGlyph</a></li>
<li><a href="#ThreePrimeOverhangSiteGlyph" title="#ThreePrimeOverhangSiteGlyph">ThreePrimeOverhangSiteGlyph</a></li>
<li><a href="#ThreePrimeOverhangSiteGlyphAlternative" title="#ThreePrimeOverhangSiteGlyphAlternative">ThreePrimeOverhangSiteGlyphAlternative</a></li>
<li><a href="#ThreePrimeStickyEndRestrictionEnzymeCleavageSiteGlyph" title="#ThreePrimeStickyEndRestrictionEnzymeCleavageSiteGlyph">ThreePrimeStickyEndRestrictionEnzymeCleavageSiteGlyph</a></li>
<li><a href="#ThreePrimeStickyEndRestrictionEnzymeCleavageSiteGlyphAlternative" title="#ThreePrimeStickyEndRestrictionEnzymeCleavageSiteGlyphAlternative">ThreePrimeStickyEndRestrictionEnzymeCleavageSiteGlyphAlternative</a></li>
<li><a href="#TranscriptionStopSiteGlyph" title="#TranscriptionStopSiteGlyph">TranscriptionStopSiteGlyph</a></li>
<li><a href="#TranslationStopSiteGlyph" title="#TranslationStopSiteGlyph">TranslationStopSiteGlyph</a></li>
<li><a href="#TriangleSimpleChemicalGlyph" title="#TriangleSimpleChemicalGlyph">TriangleSimpleChemicalGlyph</a></li>
<li><a href="#UnspecifiedGlyph" title="#UnspecifiedGlyph">UnspecifiedGlyph</a></li>
<li><a href="#UnspecifiedGlyphAlternative" title="#UnspecifiedGlyphAlternative">UnspecifiedGlyphAlternative</a></li>
<li><a href="#UnspecifiedNodeGlyph" title="#UnspecifiedNodeGlyph">UnspecifiedNodeGlyph</a></li>
<li><a href="#UnspecifiedSpeciesGlyph" title="#UnspecifiedSpeciesGlyph">UnspecifiedSpeciesGlyph</a></li>
<li><a href="#UnspecifiedSpeciesGlyphAlternative" title="#UnspecifiedSpeciesGlyphAlternative">UnspecifiedSpeciesGlyphAlternative</a></li>
</ul>
<div id="AptamerGlyph" class="entity">
<a name="#AptamerGlyph"></a>
<h3>AptamerGlyph<sup title="class" class="type-c">c</sup><span class="backlink"> back to <a href="#toc">ToC</a> or <a href="#classes">Class ToC</a></span></h3>
<p><strong>IRI:</strong> #AptamerGlyph</p>
<div class="comment">
<span class="markdown">The aptamer glyph is a cartoon diagram of a prototypical nucleic acid secondary structure for an aptamer:</span>
</div>
<dl class="description">
<dt>
has super-classes
</dt>
<dd>
<a href="#Glyph" title="#Glyph">Glyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#MolecularSpeciesGlyph" title="#MolecularSpeciesGlyph">MolecularSpeciesGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#Component">component</span>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#role">role</span>
<span class="logic">some</span>
<span class="dotted" title="http://identifiers.org/so/SO:0000031">s o:0000031</span>
</dd>
<dt>
default glyph
</dt>
<dd>
<img src="http://synbiodex.github.io/sbol-visual-ontology/Glyphs/SequenceFeatures/aptamer/aptamer-specification.png">
</dd>
</dl>
</div>
<div id="AssemblyScarGlyph" class="entity">
<a name="#AssemblyScarGlyph"></a>
<h3>AssemblyScarGlyph<sup title="class" class="type-c">c</sup><span class="backlink"> back to <a href="#toc">ToC</a> or <a href="#classes">Class ToC</a></span></h3>
<p><strong>IRI:</strong> #AssemblyScarGlyph</p>
<div class="comment">
<span class="markdown">The assembly scar glyph is an "equal sign" image, the pattern produced by the union of a 5' sticky end and 3' sticky end glyph. The scar will cover the backbone, creating a visual break suggesting the potential disruption associated with a scar:</span>
</div>
<dl class="description">
<dt>
has super-classes
</dt>
<dd>
<a href="#Glyph" title="#Glyph">Glyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#MolecularSpeciesGlyph" title="#MolecularSpeciesGlyph">MolecularSpeciesGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#Component">component</span>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#role">role</span>
<span class="logic">some</span>
<span class="dotted" title="http://identifiers.org/so/SO:0001953">s o:0001953</span>
</dd>
<dt>
has sub-classes
</dt>
<dd>
<a href="#AssemblyScarGlyphAlternative" title="#AssemblyScarGlyphAlternative">AssemblyScarGlyphAlternative</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dt>
default glyph
</dt>
<dd>
<img src="http://synbiodex.github.io/sbol-visual-ontology/Glyphs/SequenceFeatures/assembly-scar/assembly-scar-specification.png">
</dd>
</dl>
</div>
<div id="AssemblyScarGlyphAlternative" class="entity">
<a name="#AssemblyScarGlyphAlternative"></a>
<h3>AssemblyScarGlyphAlternative<sup title="class" class="type-c">c</sup><span class="backlink"> back to <a href="#toc">ToC</a> or <a href="#classes">Class ToC</a></span></h3>
<p><strong>IRI:</strong> #AssemblyScarGlyphAlternative</p>
<div class="comment">
<span class="markdown">With a double-stranded backbone:</span>
</div>
<dl class="description">
<dt>
has super-classes
</dt>
<dd>
<a href="#AssemblyScarGlyph" title="#AssemblyScarGlyph">AssemblyScarGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#isAlternativeOf" title="#isAlternativeOf">isAlternativeOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<a href="#AssemblyScarGlyph" title="#AssemblyScarGlyph">AssemblyScarGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dt>
default glyph
</dt>
<dd>
<img src="http://synbiodex.github.io/sbol-visual-ontology/Glyphs/SequenceFeatures/assembly-scar/assembly-scar-specification-doublestrand.png">
</dd>
</dl>
</div>
<div id="BiopolymerLocationGlyph" class="entity">
<a name="#BiopolymerLocationGlyph"></a>
<h3>BiopolymerLocationGlyph<sup title="class" class="type-c">c</sup><span class="backlink"> back to <a href="#toc">ToC</a> or <a href="#classes">Class ToC</a></span></h3>
<p><strong>IRI:</strong> #BiopolymerLocationGlyph</p>
<div class="comment">
<span class="markdown"> Biopolymer Location is a "stem-top" glyph for describing small sites. In this system: - the top glyph indicates the type of site (e.g., Biopolymer Location) - the stem glyph indicates whether the site affects DNA, RNA, or protein (respectively: straight, wavy, or looped)</span>
</div>
<dl class="description">
<dt>
has super-classes
</dt>
<dd>
<a href="#Glyph" title="#Glyph">Glyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#MolecularSpeciesGlyph" title="#MolecularSpeciesGlyph">MolecularSpeciesGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#Component">component</span>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#role">role</span>
<span class="logic">some</span>
<span class="dotted" title="http://identifiers.org/so/SO:0000699">s o:0000699</span>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#role">role</span>
<span class="logic">some</span>
<span class="dotted" title="http://identifiers.org/so/SO:0001236">s o:0001236</span>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#role">role</span>
<span class="logic">some</span>
<span class="dotted" title="http://identifiers.org/so/SO:0001237">s o:0001237</span>
</dd>
<dt>
has sub-classes
</dt>
<dd>
<a href="#DnaBiopolymerLocationGlyph" title="#DnaBiopolymerLocationGlyph">DnaBiopolymerLocationGlyph</a>
<sup title="class" class="type-c">c</sup>,
<a href="#ProteinBiopolymerLocationGlyph" title="#ProteinBiopolymerLocationGlyph">ProteinBiopolymerLocationGlyph</a>
<sup title="class" class="type-c">c</sup>,
<a href="#RnaBiopolymerLocationGlyph" title="#RnaBiopolymerLocationGlyph">RnaBiopolymerLocationGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dt>
default glyph
</dt>
<dd>
<img src="http://synbiodex.github.io/sbol-visual-ontology/Glyphs/SequenceFeatures/location/stem-top-specification.png">
</dd>
</dl>
</div>
<div id="BluntRestrictionSiteGlyph" class="entity">
<a name="#BluntRestrictionSiteGlyph"></a>
<h3>BluntRestrictionSiteGlyph<sup title="class" class="type-c">c</sup><span class="backlink"> back to <a href="#toc">ToC</a> or <a href="#classes">Class ToC</a></span></h3>
<p><strong>IRI:</strong> #BluntRestrictionSiteGlyph</p>
<div class="comment">
<span class="markdown">The blunt restriction site glyph is an image of two brackets facing away from one another to make a smooth-edged gap:</span>
</div>
<dl class="description">
<dt>
has super-classes
</dt>
<dd>
<a href="#Glyph" title="#Glyph">Glyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#MolecularSpeciesGlyph" title="#MolecularSpeciesGlyph">MolecularSpeciesGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#Component">component</span>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#role">role</span>
<span class="logic">some</span>
<span class="dotted" title="http://identifiers.org/so/SO:0001691">s o:0001691</span>
</dd>
<dt>
default glyph
</dt>
<dd>
<img src="http://synbiodex.github.io/sbol-visual-ontology/Glyphs/SequenceFeatures/blunt-restriction-site/blunt-restriction-site-specification.png">
</dd>
</dl>
</div>
<div id="CDSGlyph" class="entity">
<a name="#CDSGlyph"></a>
<h3>CDSGlyph<sup title="class" class="type-c">c</sup><span class="backlink"> back to <a href="#toc">ToC</a> or <a href="#classes">Class ToC</a></span></h3>
<p><strong>IRI:</strong> #CDSGlyph</p>
<div class="comment">
<span class="markdown">The coding sequence glyph is a "box" with one side bent out arrow-like to show direction:</span>
</div>
<dl class="description">
<dt>
has super-classes
</dt>
<dd>
<a href="#Glyph" title="#Glyph">Glyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#MolecularSpeciesGlyph" title="#MolecularSpeciesGlyph">MolecularSpeciesGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#Component">component</span>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#role">role</span>
<span class="logic">some</span>
<span class="dotted" title="http://identifiers.org/so/SO:0000316">s o:0000316</span>
</dd>
<dt>
has sub-classes
</dt>
<dd>
<a href="#CDSGlyphAlternative" title="#CDSGlyphAlternative">CDSGlyphAlternative</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dt>
default glyph
</dt>
<dd>
<img src="http://synbiodex.github.io/sbol-visual-ontology/Glyphs/SequenceFeatures/cds/cds-specification.png">
</dd>
</dl>
</div>
<div id="CDSGlyphAlternative" class="entity">
<a name="#CDSGlyphAlternative"></a>
<h3>CDSGlyphAlternative<sup title="class" class="type-c">c</sup><span class="backlink"> back to <a href="#toc">ToC</a> or <a href="#classes">Class ToC</a></span></h3>
<p><strong>IRI:</strong> #CDSGlyphAlternative</p>
<div class="comment">
<span class="markdown">Alternately, CDS may be represented as a block arrow:</span>
</div>
<dl class="description">
<dt>
has super-classes
</dt>
<dd>
<a href="#CDSGlyph" title="#CDSGlyph">CDSGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#isAlternativeOf" title="#isAlternativeOf">isAlternativeOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<a href="#CDSGlyph" title="#CDSGlyph">CDSGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dt>
default glyph
</dt>
<dd>
<img src="http://synbiodex.github.io/sbol-visual-ontology/Glyphs/SequenceFeatures/cds/cds-arrow-specification.png">
</dd>
</dl>
</div>
<div id="ChromosomalLocusGlyph" class="entity">
<a name="#ChromosomalLocusGlyph"></a>
<h3>ChromosomalLocusGlyph<sup title="class" class="type-c">c</sup><span class="backlink"> back to <a href="#toc">ToC</a> or <a href="#classes">Class ToC</a></span></h3>
<p><strong>IRI:</strong> #ChromosomalLocusGlyph</p>
<div class="comment">
<span class="markdown"> The glyph to indicate integration into a chromosome is an S-shaped curve of the backbone, suggesting something that might be part of a larger looping structure:</span>
</div>
<dl class="description">
<dt>
has super-classes
</dt>
<dd>
<a href="#Glyph" title="#Glyph">Glyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#MolecularSpeciesGlyph" title="#MolecularSpeciesGlyph">MolecularSpeciesGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#Component">component</span>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#role">role</span>
<span class="logic">some</span>
<span class="dotted" title="http://identifiers.org/so/SO:0000830">s o:0000830</span>
</dd>
<dt>
default glyph
</dt>
<dd>
<img src="http://synbiodex.github.io/sbol-visual-ontology/Glyphs/SequenceFeatures/chromosomal-locus/chromosomal-locus-specification.png">
</dd>
</dl>
</div>
<div id="CircularPlasmidGlyph" class="entity">
<a name="#CircularPlasmidGlyph"></a>
<h3>CircularPlasmidGlyph<sup title="class" class="type-c">c</sup><span class="backlink"> back to <a href="#toc">ToC</a> or <a href="#classes">Class ToC</a></span></h3>
<p><strong>IRI:</strong> #CircularPlasmidGlyph</p>
<div class="comment">
<span class="markdown"> The glyph to indicate embedding in a plasmid is a turn of the backbone indicating its circular structure:</span>
</div>
<dl class="description">
<dt>
has super-classes
</dt>
<dd>
<a href="#Glyph" title="#Glyph">Glyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#MolecularSpeciesGlyph" title="#MolecularSpeciesGlyph">MolecularSpeciesGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#Component">component</span>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#role">role</span>
<span class="logic">some</span>
<span class="dotted" title="http://identifiers.org/so/SO:0002211">s o:0002211</span>
</dd>
<dt>
default glyph
</dt>
<dd>
<img src="http://synbiodex.github.io/sbol-visual-ontology/Glyphs/SequenceFeatures/circular-plasmid/circular-plasmid-specification.png">
</dd>
</dl>
</div>
<div id="CleavageSiteGlyph" class="entity">
<a name="#CleavageSiteGlyph"></a>
<h3>CleavageSiteGlyph<sup title="class" class="type-c">c</sup><span class="backlink"> back to <a href="#toc">ToC</a> or <a href="#classes">Class ToC</a></span></h3>
<p><strong>IRI:</strong> #CleavageSiteGlyph</p>
<div class="comment">
<span class="markdown">Cleavage Site is a "stem-top" glyph for describing small sites. In this system: - the top glyph indicates the type of site (e.g., Cleavage Site) - the stem glyph indicates whether the site affects DNA, RNA, or protein (respectively: straight, wavy, or looped)</span>
</div>
<dl class="description">
<dt>
has super-classes
</dt>
<dd>
<a href="#Glyph" title="#Glyph">Glyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#MolecularSpeciesGlyph" title="#MolecularSpeciesGlyph">MolecularSpeciesGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#Component">component</span>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#role">role</span>
<span class="logic">some</span>
<span class="dotted" title="http://identifiers.org/so/SO:0001688">s o:0001688</span>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#role">role</span>
<span class="logic">some</span>
<span class="dotted" title="http://identifiers.org/so/SO:0001687">s o:0001687</span>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#role">role</span>
<span class="logic">some</span>
<span class="dotted" title="http://identifiers.org/so/SO:0001977">s o:0001977</span>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#role">role</span>
<span class="logic">some</span>
<span class="dotted" title="http://identifiers.org/so/SO:0001956">s o:0001956</span>
</dd>
<dt>
has sub-classes
</dt>
<dd>
<a href="#DnaCleavageSiteGlyph" title="#DnaCleavageSiteGlyph">DnaCleavageSiteGlyph</a>
<sup title="class" class="type-c">c</sup>,
<a href="#ProteinCleavageSiteGlyph" title="#ProteinCleavageSiteGlyph">ProteinCleavageSiteGlyph</a>
<sup title="class" class="type-c">c</sup>,
<a href="#RnaCleavageSiteGlyph" title="#RnaCleavageSiteGlyph">RnaCleavageSiteGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dt>
default glyph
</dt>
<dd>
<img src="http://synbiodex.github.io/sbol-visual-ontology/Glyphs/SequenceFeatures/cleavage-site/stem-top-specification.png">
</dd>
</dl>
</div>
<div id="ComplexGlyph" class="entity">
<a name="#ComplexGlyph"></a>
<h3>ComplexGlyph<sup title="class" class="type-c">c</sup><span class="backlink"> back to <a href="#toc">ToC</a> or <a href="#classes">Class ToC</a></span></h3>
<p><strong>IRI:</strong> #ComplexGlyph</p>
<div class="comment">
<span class="markdown">The RECOMMENDED glyph for a complex is a composite of the glyphs for the molecules comprising the complex. For example, a protein bound to a simple chemical, a guide RNA, or another protein (in order:protein-small molecule, protein-guide RNA, protein-protein):</span>
</div>
<dl class="description">
<dt>
has super-classes
</dt>
<dd>
<a href="#Glyph" title="#Glyph">Glyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#MolecularSpeciesGlyph" title="#MolecularSpeciesGlyph">MolecularSpeciesGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#Component">component</span>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#type">type</span>
<span class="logic">some</span>
<span class="dotted" title="http://identifiers.org/sbo/SBO:0000253">s b o:0000253</span>
</dd>
<dt>
has sub-classes
</dt>
<dd>
<a href="#ComplexGlyphAlternative" title="#ComplexGlyphAlternative">ComplexGlyphAlternative</a>
<sup title="class" class="type-c">c</sup>,
<a href="#ProteinGuideRnaComplexGlyph" title="#ProteinGuideRnaComplexGlyph">ProteinGuideRnaComplexGlyph</a>
<sup title="class" class="type-c">c</sup>,
<a href="#ProteinProteinComplexGlyph" title="#ProteinProteinComplexGlyph">ProteinProteinComplexGlyph</a>
<sup title="class" class="type-c">c</sup>,
<a href="#ProteinSmallMoleculeComplexGlyph" title="#ProteinSmallMoleculeComplexGlyph">ProteinSmallMoleculeComplexGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
</dl>
</div>
<div id="ComplexGlyphAlternative" class="entity">
<a name="#ComplexGlyphAlternative"></a>
<h3>ComplexGlyphAlternative<sup title="class" class="type-c">c</sup><span class="backlink"> back to <a href="#toc">ToC</a> or <a href="#classes">Class ToC</a></span></h3>
<p><strong>IRI:</strong> #ComplexGlyphAlternative</p>
<div class="comment">
<span class="markdown">This may also be applied to show complex formation (binding) of a molecule to a nucleic acid construct by compositing the molecule glyph with the appropriate portion of the nucleic acid construct. For example, a protein binding to the promoter of a transcriptional unit:  An alternative is the SBGN "cornered rectangle" glyph for a complex:</span>
</div>
<dl class="description">
<dt>
has super-classes
</dt>
<dd>
<a href="#ComplexGlyph" title="#ComplexGlyph">ComplexGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#ProteinSmallMoleculeComplexGlyph" title="#ProteinSmallMoleculeComplexGlyph">ProteinSmallMoleculeComplexGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#ProteinGuideRnaComplexGlyph" title="#ProteinGuideRnaComplexGlyph">ProteinGuideRnaComplexGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#ProteinProteinComplexGlyph" title="#ProteinProteinComplexGlyph">ProteinProteinComplexGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dt>
default glyph
</dt>
<dd>
<img src="http://synbiodex.github.io/sbol-visual-ontology/Glyphs/MolecularSpecies/complex/complex-sbgn-specification.png">
</dd>
</dl>
</div>
<div id="CompositeGlyph" class="entity">
<a name="#CompositeGlyph"></a>
<h3>CompositeGlyph<sup title="class" class="type-c">c</sup><span class="backlink"> back to <a href="#toc">ToC</a> or <a href="#classes">Class ToC</a></span></h3>
<p><strong>IRI:</strong> #CompositeGlyph</p>
<div class="comment">
<span class="markdown"> The glyph for Composite is dashed "expanding lines" connecting any "base" glyph representing the more abstract composite (e.g., Omitted Detail, or Terminator, or Promoter) to a backbone diagramming the contents of the composite. Note the bounding box is indicating the location of the base glyph, and would scale with that glyph.</span>
</div>
<dl class="description">
<dt>
has super-classes
</dt>
<dd>
<a href="#Glyph" title="#Glyph">Glyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#MolecularSpeciesGlyph" title="#MolecularSpeciesGlyph">MolecularSpeciesGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dt>
default glyph
</dt>
<dd>
<img src="http://synbiodex.github.io/sbol-visual-ontology/Glyphs/SequenceFeatures/composite/composite-specification.png">
</dd>
</dl>
</div>
<div id="ControlGlyph" class="entity">
<a name="#ControlGlyph"></a>
<h3>ControlGlyph<sup title="class" class="type-c">c</sup><span class="backlink"> back to <a href="#toc">ToC</a> or <a href="#classes">Class ToC</a></span></h3>
<p><strong>IRI:</strong> #ControlGlyph</p>
<div class="comment">
<span class="markdown">An arrow with a diamond head:</span>
</div>
<dl class="description">
<dt>
has super-classes
</dt>
<dd>
<a href="#Glyph" title="#Glyph">Glyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#hasHead" title="#hasHead">hasHead</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#role">role</span>
<span class="logic">some</span>
<span class="dotted" title="http://identifiers.org/sbo/SBO:0000644">s b o:0000644</span>
</dd>
<dd>
<a href="#hasTail" title="#hasTail">hasTail</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#role">role</span>
<span class="logic">some</span>
<span class="dotted" title="http://identifiers.org/sbo/SBO:0000019">s b o:0000019</span>
</dd>
<dd>
<a href="#InteractionGlyph" title="#InteractionGlyph">InteractionGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#Interaction">interaction</span>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#type">type</span>
<span class="logic">some</span>
<span class="dotted" title="http://identifiers.org/sbo/SBO:0000168">s b o:0000168</span>
</dd>
<dt>
default glyph
</dt>
<dd>
<img src="http://synbiodex.github.io/sbol-visual-ontology/Glyphs/Interactions/control/control-specification.png">
</dd>
</dl>
</div>
<div id="DegradationGlyph" class="entity">
<a name="#DegradationGlyph"></a>
<h3>DegradationGlyph<sup title="class" class="type-c">c</sup><span class="backlink"> back to <a href="#toc">ToC</a> or <a href="#classes">Class ToC</a></span></h3>
<p><strong>IRI:</strong> #DegradationGlyph</p>
<div class="comment">
<span class="markdown">Identical to the Process glyph, but with an empty set at the sink of the arrowhead:</span>
</div>
<dl class="description">
<dt>
has super-classes
</dt>
<dd>
<a href="#Glyph" title="#Glyph">Glyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#hasTail" title="#hasTail">hasTail</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#role">role</span>
<span class="logic">some</span>
<span class="dotted" title="http://identifiers.org/sbo/SBO:0000010">s b o:0000010</span>
</dd>
<dd>
<a href="#InteractionGlyph" title="#InteractionGlyph">InteractionGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#Interaction">interaction</span>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#type">type</span>
<span class="logic">some</span>
<span class="dotted" title="http://identifiers.org/sbo/SBO:0000179">s b o:0000179</span>
</dd>
<dt>
default glyph
</dt>
<dd>
<img src="http://synbiodex.github.io/sbol-visual-ontology/Glyphs/Interactions/degradation/degradation-specification.png">
</dd>
</dl>
</div>
<div id="DnaBiopolymerLocationGlyph" class="entity">
<a name="#DnaBiopolymerLocationGlyph"></a>
<h3>DnaBiopolymerLocationGlyph<sup title="class" class="type-c">c</sup><span class="backlink"> back to <a href="#toc">ToC</a> or <a href="#classes">Class ToC</a></span></h3>
<p><strong>IRI:</strong> #DnaBiopolymerLocationGlyph</p>
<div class="comment">
<span class="markdown">The RECOMMENDED top for Biopolymer Location is a circle, reminiscent of a pin stuck into a location (in order: DNA, RNA, Protein):</span>
</div>
<dl class="description">
<dt>
has super-classes
</dt>
<dd>
<a href="#BiopolymerLocationGlyph" title="#BiopolymerLocationGlyph">BiopolymerLocationGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#Component">component</span>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#role">role</span>
<span class="logic">some</span>
<span class="dotted" title="http://identifiers.org/so/SO:0000699">s o:0000699</span>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#role">role</span>
<span class="logic">some</span>
<span class="dotted" title="http://identifiers.org/so/SO:0001236">s o:0001236</span>
</dd>
<dt>
has sub-classes
</dt>
<dd>
<a href="#DnaBiopolymerLocationGlyphAlternative" title="#DnaBiopolymerLocationGlyphAlternative">DnaBiopolymerLocationGlyphAlternative</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dt>
default glyph
</dt>
<dd>
<img src="http://synbiodex.github.io/sbol-visual-ontology/Glyphs/SequenceFeatures/location/location-dna-specification.png">
</dd>
</dl>
</div>
<div id="DnaBiopolymerLocationGlyphAlternative" class="entity">
<a name="#DnaBiopolymerLocationGlyphAlternative"></a>
<h3>DnaBiopolymerLocationGlyphAlternative<sup title="class" class="type-c">c</sup><span class="backlink"> back to <a href="#toc">ToC</a> or <a href="#classes">Class ToC</a></span></h3>
<p><strong>IRI:</strong> #DnaBiopolymerLocationGlyphAlternative</p>
<div class="comment">
<span class="markdown">An alternative is to have "nothing" for the top, just an extended version of the stem itself (in order: DNA, RNA, Protein):</span>
</div>
<dl class="description">
<dt>
has super-classes
</dt>
<dd>
<a href="#DnaBiopolymerLocationGlyph" title="#DnaBiopolymerLocationGlyph">DnaBiopolymerLocationGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#isAlternativeOf" title="#isAlternativeOf">isAlternativeOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<a href="#DnaBiopolymerLocationGlyph" title="#DnaBiopolymerLocationGlyph">DnaBiopolymerLocationGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dt>
default glyph
</dt>
<dd>
<img src="http://synbiodex.github.io/sbol-visual-ontology/Glyphs/SequenceFeatures/location/location-dna-no-top-specification.png">
</dd>
</dl>
</div>
<div id="DnaCleavageSiteGlyph" class="entity">
<a name="#DnaCleavageSiteGlyph"></a>
<h3>DnaCleavageSiteGlyph<sup title="class" class="type-c">c</sup><span class="backlink"> back to <a href="#toc">ToC</a> or <a href="#classes">Class ToC</a></span></h3>
<p><strong>IRI:</strong> #DnaCleavageSiteGlyph</p>
<div class="comment">
<span class="markdown">The Cleavage Site top is an "X" suggesting slicing on top of a stem connecting to the backbone at the point where cleavage will occur (in order: DNA, RNA, Protein):</span>
</div>
<dl class="description">
<dt>
has super-classes
</dt>
<dd>
<a href="#CleavageSiteGlyph" title="#CleavageSiteGlyph">CleavageSiteGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#Component">component</span>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#role">role</span>
<span class="logic">some</span>
<span class="dotted" title="http://identifiers.org/so/SO:0001688">s o:0001688</span>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#role">role</span>
<span class="logic">some</span>
<span class="dotted" title="http://identifiers.org/so/SO:0001687">s o:0001687</span>
</dd>
<dt>
default glyph
</dt>
<dd>
<img src="http://synbiodex.github.io/sbol-visual-ontology/Glyphs/SequenceFeatures/cleavage-site/nuclease-site-specification.png">
</dd>
</dl>
</div>
<div id="DnaStabilityElementGlyph" class="entity">
<a name="#DnaStabilityElementGlyph"></a>
<h3>DnaStabilityElementGlyph<sup title="class" class="type-c">c</sup><span class="backlink"> back to <a href="#toc">ToC</a> or <a href="#classes">Class ToC</a></span></h3>
<p><strong>IRI:</strong> #DnaStabilityElementGlyph</p>
<div class="comment">
<span class="markdown">The top for a Stability Element is a pentagon suggesting the shape of a shield, on top of a stem connecting to the backbone at the point where the stability element is located (in order: DNA, RNA, Protein):</span>
</div>
<dl class="description">
<dt>
has super-classes
</dt>
<dd>
<a href="#StabilityElementGlyph" title="#StabilityElementGlyph">StabilityElementGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dt>
default glyph
</dt>
<dd>
<img src="http://synbiodex.github.io/sbol-visual-ontology/Glyphs/SequenceFeatures/stability-element/dna-stability-element-specification.png">
</dd>
</dl>
</div>
<div id="Double-StrandedNucleicAcidGlyph" class="entity">
<a name="#Double-StrandedNucleicAcidGlyph"></a>
<h3>Double-StrandedNucleicAcidGlyph<sup title="class" class="type-c">c</sup><span class="backlink"> back to <a href="#toc">ToC</a> or <a href="#classes">Class ToC</a></span></h3>
<p><strong>IRI:</strong> #Double-StrandedNucleicAcidGlyph</p>
<div class="comment">
<span class="markdown">The RECOMMENDED glyph for dsNA is a double-helix:</span>
</div>
<dl class="description">
<dt>
has super-classes
</dt>
<dd>
<a href="#Glyph" title="#Glyph">Glyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#MolecularSpeciesGlyph" title="#MolecularSpeciesGlyph">MolecularSpeciesGlyph</a>
<sup title="class" class="type-c">c</sup>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#Component">component</span>
</dd>
<dd>
<a href="#isGlyphOf" title="#isGlyphOf">isGlyphOf</a>
<sup title="object property" class="type-op">op</sup>
<span class="logic">some</span>
<span class="dotted" title="http://sbols.org/v3#type">type</span>
<span class="logic">some</span>
<span class="dotted" title="http://identifiers.org/sbo/SBO:0000251">s b o:0000251</span>
</dd>
<dt>