diff --git a/index.Rmd b/index.Rmd index d33d818..2b71be7 100644 --- a/index.Rmd +++ b/index.Rmd @@ -23,6 +23,11 @@ output: body { background-color: #f7eec6!important; } +a:link { + color: green; + background-color: transparent; + text-decoration: none; +} ``` I am a geneticist and computational RNA biologist working to understand neurodegeneration. I study the genetic factors that cause diseases such as amyotrophic lateral sclerosis (ALS), frontotemporal dementia (FTD), and Alzheimer's disease. I develop and apply computational tools to measure gene expression, mRNA splicing, and genetic variation, as well as statistical methods to integrate multiple types of genomic data. @@ -30,19 +35,22 @@ I am a geneticist and computational RNA biologist working to understand neurodeg #### Education | **University College London** | London, UK | _Ph.D. Clinical Neuroscience_ | September 2014 - February 2019 +| Mentors: [Adrian Isaacs](https://ukdri.ac.uk/team/adrian-isaacs), [Pietro Fratta](https://www.frattalab.org/team) & [Vincent Plagnol](https://www.linkedin.com/in/vincent-plagnol-ab8a5b65/?originalSubdomain=uk) | _MSci Natural Sciences_ | September 2010 - July 2014 +| Mentor: [John Wood](https://www.ucl.ac.uk/molecular-nociception-group/) | | #### Experience | **Icahn School of Medicine at Mount Sinai** | New York City, USA | _Instructor_ | November 2021 - Present | _Postdoctoral Fellow_ | February 2019 - November 2021 +| Mentor: [Towfique Raj](https://rajlab.org/) | **Inivata** | Cambridge, UK | _Computational Scientist_ | January 2018 - March 2018 | **Stanford University** | Palo Alto, USA -| _Visiting Student Researcher_ | February 2017 - May 2017 +| _Visiting Student Researcher, [Pritchard Lab](https://web.stanford.edu/group/pritchardlab/home.html)_ | February 2017 - May 2017 | **Justus Liebig University** | Giessen, Germany -| _DAAD RISE Scholar_ | June 2012 - August 2012 +| _DAAD RISE Scholar, [Diener Lab](https://www.uni-giessen.de/de/fbz/fb10/institute_klinikum/institute/vphysbio/allgemein/personen-veterinaer-physiologie/martin-diener)_ | June 2012 - August 2012 | | #### Skills @@ -54,7 +62,10 @@ I am a geneticist and computational RNA biologist working to understand neurodeg | **Software I wrote/co-wrote:** | [NYGC ALS Consortium Spinal Cord Browser](https://rstudio-connect.hpc.mssm.edu/als_spinal_cord_browser/) -| [leafcutter](https://davidaknowles.github.io/leafcutter/) | [leafviz](https://github.com/jackhump/leafviz) | [sqtlviztools](https://github.com/jackhump/sqtlviztools) | [cryptex](https://github.com/jackhump/cryptex) +| [leafcutter](https://davidaknowles.github.io/leafcutter/) +| [leafviz](https://github.com/jackhump/leafviz) +| [sqtlviztools](https://github.com/jackhump/sqtlviztools) +| [cryptex](https://github.com/jackhump/cryptex) | | #### Selected Publications diff --git a/index.html b/index.html index 8ebe270..2d376d3 100644 --- a/index.html +++ b/index.html @@ -102,6 +102,11 @@

Jack Humphrey

body { background-color: #f7eec6!important; } +a:link { +color: green; +background-color: transparent; +text-decoration: none; +}

I am a geneticist and computational RNA biologist working to understand neurodegeneration. I study the genetic factors @@ -117,8 +122,14 @@

Education

London | London, UK
   Ph.D. Clinical Neuroscience | September 2014 - February 2019
+       Mentors: Adrian + Isaacs, Pietro + Fratta & Vincent + Plagnol
   MSci Natural Sciences | September 2010 - July 2014
+       Mentor: John + Wood

@@ -129,15 +140,18 @@

Experience

   Instructor | November 2021 - Present
   Postdoctoral Fellow | February 2019 - November 2021
+       Mentor: Towfique + Raj
Inivata | Cambridge, UK
   Computational Scientist | January 2018 - March 2018
Stanford University | Palo Alto, USA
-    Visiting Student Researcher | February 2017 - - May 2017
+    Visiting Student Researcher, Pritchard + Lab | February 2017 - May 2017
Justus Liebig University | Giessen, Germany
-   DAAD RISE Scholar | June 2012 - August 2012
+   DAAD RISE Scholar, Diener + Lab | June 2012 - August 2012

@@ -154,10 +168,10 @@

Skills

wrote/co-wrote:
    NYGC ALS Consortium Spinal Cord Browser
-     leafcutter - | leafviz - | sqtlviztools - | cryptex
+     leafcutter
+     leafviz
+     sqtlviztools
+     cryptex

@@ -262,6 +276,11 @@

Jack Humphrey

body { background-color: #f7eec6!important; } +a:link { +color: green; +background-color: transparent; +text-decoration: none; +}

I am a geneticist and computational RNA biologist working to understand neurodegeneration. I study the @@ -277,8 +296,14 @@

Education

London | London, UK
   Ph.D. Clinical Neuroscience | September 2014 - February 2019
+       Mentors: Adrian + Isaacs, Pietro Fratta + & Vincent + Plagnol
   MSci Natural Sciences | September 2010 - July 2014
+       Mentor: John + Wood

@@ -289,17 +314,19 @@

Experience

   Instructor | November 2021 - Present
   Postdoctoral Fellow | February 2019 - November 2021
+       Mentor: Towfique + Raj
Inivata | Cambridge, UK
   Computational Scientist | January 2018 - March 2018
Stanford University | Palo Alto, USA
-    Visiting Student Researcher | February 2017 - - May 2017
+    Visiting Student Researcher, Pritchard + Lab | February 2017 - May 2017
Justus Liebig University | Giessen, Germany
-   DAAD RISE Scholar | June 2012 - August - 2012
+   DAAD RISE Scholar, Diener + Lab | June 2012 - August 2012

@@ -316,10 +343,10 @@

Skills

wrote/co-wrote:
    NYGC ALS Consortium Spinal Cord Browser
-     leafcutter - | leafviz | - sqtlviztools - | cryptex
+     leafcutter
+     leafviz
+     sqtlviztools
+     cryptex