DESCRIPTION

Package: Gviz
Title: Plotting data and annotation information along genomic coordinates
Version: 1.47.1
Authors@R: c(person("Florian", "Hahne", role="aut"),
	 person("Steffen", "Durinck", role="aut"),
	 person("Robert", "Ivanek", role=c("aut", "cre"), 
	        email="robert.ivanek@unibas.ch", 
	        comment=c(ORCID="0000-0002-8403-056X")),
	 person("Arne", "Mueller", role="aut"),
	 person("Steve", "Lianoglou", role="aut"),
	 person("Ge", "Tan", role="aut"),
	 person("Lance", "Parsons", role="aut"),
	 person("Shraddha", "Pai", role="aut"),
	 person("Thomas", "McCarthy", role="ctb"),
	 person("Felix", "Ernst", role="ctb"),
	 person("Mike", "Smith", role="ctb"))
Description: Genomic data analyses requires integrated visualization 
    of known genomic information and new experimental data. Gviz uses
    the biomaRt and the rtracklayer packages to perform live
    annotation queries to Ensembl and UCSC and translates this to
    e.g. gene/transcript structures in viewports of the grid graphics
    package. This results in genomic information plotted together with
    your data.
LazyLoad: yes
Encoding: UTF-8
RoxygenNote: 7.2.3.9001
Roxygen: list(markdown = TRUE)
Depends:
    R (>= 4.3),
    methods,
    S4Vectors (>= 0.9.25),
    IRanges (>= 1.99.18),
    GenomicRanges (>= 1.17.20),
    grid
Imports:
    XVector (>= 0.5.7),
    rtracklayer (>= 1.25.13),
    lattice, RColorBrewer,
    biomaRt (>= 2.11.0),
    AnnotationDbi (>= 1.27.5),
    Biobase (>= 2.15.3),
    GenomicFeatures (>= 1.17.22),
    ensembldb (>= 2.11.3),
    BSgenome (>= 1.33.1),
    Biostrings (>= 2.33.11),
    biovizBase (>= 1.13.8),
    Rsamtools (>= 1.17.28),
    latticeExtra (>= 0.6-26),
    matrixStats (>= 0.8.14),
    GenomicAlignments (>= 1.1.16),
    GenomeInfoDb (>= 1.1.3),
    BiocGenerics (>= 0.11.3),
    digest(>= 0.6.8),
    graphics, 
    grDevices, 
    stats, 
    utils
Suggests:
    BSgenome.Hsapiens.UCSC.hg19,
    xml2,
    BiocStyle,
    knitr,
    rmarkdown,
    testthat
biocViews: Visualization, Microarray, Sequencing
URL: https://github.com/ivanek/Gviz
BugReports: https://github.com/ivanek/Gviz/issues
VignetteBuilder: knitr
License: Artistic-2.0
Collate: 
    'utils.R'
    'ImageMap-class.R'
    'DisplayPars-class.R'
    'GdObject-class.R'
    'ReferenceTrack-class.R'
    'SequenceTrack-class.R'
    'RangeTrack-class.R'
    'StackedTrack-class.R'
    'NumericTrack-class.R'
    'DataTrack-class.R'
    'AlignmentsTrack-class.R'
    'AnnotationTrack-class.R'
    'GeneRegionTrack-class.R'
    'BiomartGeneRegionTrack-class.R'
    'CustomTrack-class.R'
    'GenomeAxisTrack-class.R'
    'Gviz-defunct.R'
    'Gviz-deprecated.R'
    'HighlightTrack-class.R'
    'IdeogramTrack-class.R'
    'OverlayTrack-class.R'
    'UcscTrack.R'
    'collapsing.R'
    'datasets.R'
    'exportTracks.R'
    'grouping.R'
    'plotTracks.R'
    'settings.R'