Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add snpEff #13

Open
2 of 6 tasks
vsatheesh opened this issue Jan 19, 2024 · 0 comments · May be fixed by #16
Open
2 of 6 tasks

Add snpEff #13

vsatheesh opened this issue Jan 19, 2024 · 0 comments · May be fixed by #16
Assignees
@j23414 @vsatheesh

Comments

@vsatheesh
Copy link
Contributor

vsatheesh commented Jan 19, 2024 •
edited by j23414
Loading

Description

TBD

To do

  • Add parameters --annotate, --gff, and --vcf
  • Write out a design for when a snpEff database exists and for those where there isn't one.
    • Implement a rudimentary call for snpEff when the vcf file is already computed
  • Run the pipeline with the minimal data set.
  • Update README
  • Think about when to release a version

master...feat/snpeff
@j23414 j23414 linked a pull request Feb 21, 2024 that will close this issue
draft: SnpEff Variant Annotation #16
Open
1 task
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@j23414 j23414

@vsatheesh vsatheesh

Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging a pull request may close this issue.

draft: SnpEff Variant Annotation isugifNF/GATK-flow
2 participants
@j23414 @vsatheesh