diff --git a/manual/develop/en/.buildinfo b/manual/develop/en/.buildinfo index 13933b44..44fcd1b8 100644 --- a/manual/develop/en/.buildinfo +++ b/manual/develop/en/.buildinfo @@ -1,4 +1,4 @@ # Sphinx build info version 1 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done. -config: 3acbb30cac794629572a38a5d72c4acc +config: 8067de4eb047a8eb67e8de57bc94a591 tags: 645f666f9bcd5a90fca523b33c5a78b7 diff --git a/manual/develop/en/_modules/index.html b/manual/develop/en/_modules/index.html index b32c94d8..df1cdfb4 100644 --- a/manual/develop/en/_modules/index.html +++ b/manual/develop/en/_modules/index.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/blm/basis/fourier.html b/manual/develop/en/_modules/physbo/blm/basis/fourier.html index eb18c9af..c08d3003 100644 --- a/manual/develop/en/_modules/physbo/blm/basis/fourier.html +++ b/manual/develop/en/_modules/physbo/blm/basis/fourier.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/blm/core/model.html b/manual/develop/en/_modules/physbo/blm/core/model.html index 87010757..afb5aa29 100644 --- a/manual/develop/en/_modules/physbo/blm/core/model.html +++ b/manual/develop/en/_modules/physbo/blm/core/model.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/blm/inf/exact.html b/manual/develop/en/_modules/physbo/blm/inf/exact.html index ea72d3ed..ba9347ac 100644 --- a/manual/develop/en/_modules/physbo/blm/inf/exact.html +++ b/manual/develop/en/_modules/physbo/blm/inf/exact.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/blm/lik/gauss.html b/manual/develop/en/_modules/physbo/blm/lik/gauss.html index 1e1f9ef3..8ed39380 100644 --- a/manual/develop/en/_modules/physbo/blm/lik/gauss.html +++ b/manual/develop/en/_modules/physbo/blm/lik/gauss.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/blm/lik/linear.html b/manual/develop/en/_modules/physbo/blm/lik/linear.html index 0d3e5f14..07e72a9e 100644 --- a/manual/develop/en/_modules/physbo/blm/lik/linear.html +++ b/manual/develop/en/_modules/physbo/blm/lik/linear.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/blm/predictor.html b/manual/develop/en/_modules/physbo/blm/predictor.html index a03a2b7a..44dab176 100644 --- a/manual/develop/en/_modules/physbo/blm/predictor.html +++ b/manual/develop/en/_modules/physbo/blm/predictor.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/blm/prior/gauss.html b/manual/develop/en/_modules/physbo/blm/prior/gauss.html index 4414208a..97f8bf9a 100644 --- a/manual/develop/en/_modules/physbo/blm/prior/gauss.html +++ b/manual/develop/en/_modules/physbo/blm/prior/gauss.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/gp/core/learning.html b/manual/develop/en/_modules/physbo/gp/core/learning.html index 3d6c5cef..8db3268b 100644 --- a/manual/develop/en/_modules/physbo/gp/core/learning.html +++ b/manual/develop/en/_modules/physbo/gp/core/learning.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/gp/core/model.html b/manual/develop/en/_modules/physbo/gp/core/model.html index 5a9b13ce..9b257de8 100644 --- a/manual/develop/en/_modules/physbo/gp/core/model.html +++ b/manual/develop/en/_modules/physbo/gp/core/model.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/gp/core/prior.html b/manual/develop/en/_modules/physbo/gp/core/prior.html index c65007b3..355ee7dc 100644 --- a/manual/develop/en/_modules/physbo/gp/core/prior.html +++ b/manual/develop/en/_modules/physbo/gp/core/prior.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/gp/cov/gauss.html b/manual/develop/en/_modules/physbo/gp/cov/gauss.html index 30cfbbff..1e6ac635 100644 --- a/manual/develop/en/_modules/physbo/gp/cov/gauss.html +++ b/manual/develop/en/_modules/physbo/gp/cov/gauss.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/gp/inf/exact.html b/manual/develop/en/_modules/physbo/gp/inf/exact.html index d165545f..64a1d927 100644 --- a/manual/develop/en/_modules/physbo/gp/inf/exact.html +++ b/manual/develop/en/_modules/physbo/gp/inf/exact.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/gp/lik/gauss.html b/manual/develop/en/_modules/physbo/gp/lik/gauss.html index 2d0c0a0b..7755d8f3 100644 --- a/manual/develop/en/_modules/physbo/gp/lik/gauss.html +++ b/manual/develop/en/_modules/physbo/gp/lik/gauss.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/gp/mean/const.html b/manual/develop/en/_modules/physbo/gp/mean/const.html index 8c78f0a1..7a16c441 100644 --- a/manual/develop/en/_modules/physbo/gp/mean/const.html +++ b/manual/develop/en/_modules/physbo/gp/mean/const.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/gp/mean/zero.html b/manual/develop/en/_modules/physbo/gp/mean/zero.html index 31bda1de..f412583b 100644 --- a/manual/develop/en/_modules/physbo/gp/mean/zero.html +++ b/manual/develop/en/_modules/physbo/gp/mean/zero.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/gp/predictor.html b/manual/develop/en/_modules/physbo/gp/predictor.html index 1ad9d88b..fdff25d5 100644 --- a/manual/develop/en/_modules/physbo/gp/predictor.html +++ b/manual/develop/en/_modules/physbo/gp/predictor.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/misc/centering.html b/manual/develop/en/_modules/physbo/misc/centering.html index ae1d90c7..72195734 100644 --- a/manual/develop/en/_modules/physbo/misc/centering.html +++ b/manual/develop/en/_modules/physbo/misc/centering.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/misc/gauss_elim.html b/manual/develop/en/_modules/physbo/misc/gauss_elim.html index 7e2976cd..c80df1d5 100644 --- a/manual/develop/en/_modules/physbo/misc/gauss_elim.html +++ b/manual/develop/en/_modules/physbo/misc/gauss_elim.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/misc/set_config.html b/manual/develop/en/_modules/physbo/misc/set_config.html index cd94bb5b..3105cd10 100644 --- a/manual/develop/en/_modules/physbo/misc/set_config.html +++ b/manual/develop/en/_modules/physbo/misc/set_config.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/opt/adam.html b/manual/develop/en/_modules/physbo/opt/adam.html index 21a58419..497447f8 100644 --- a/manual/develop/en/_modules/physbo/opt/adam.html +++ b/manual/develop/en/_modules/physbo/opt/adam.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/predictor.html b/manual/develop/en/_modules/physbo/predictor.html index 0c340800..b30b8cb0 100644 --- a/manual/develop/en/_modules/physbo/predictor.html +++ b/manual/develop/en/_modules/physbo/predictor.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/search/discrete/policy.html b/manual/develop/en/_modules/physbo/search/discrete/policy.html index 8bcd6f0e..dd58c776 100644 --- a/manual/develop/en/_modules/physbo/search/discrete/policy.html +++ b/manual/develop/en/_modules/physbo/search/discrete/policy.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/search/discrete/results.html b/manual/develop/en/_modules/physbo/search/discrete/results.html index 98ab0020..1b76a9c0 100644 --- a/manual/develop/en/_modules/physbo/search/discrete/results.html +++ b/manual/develop/en/_modules/physbo/search/discrete/results.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/search/discrete_multi/policy.html b/manual/develop/en/_modules/physbo/search/discrete_multi/policy.html index ca4d50b4..fba16dd9 100644 --- a/manual/develop/en/_modules/physbo/search/discrete_multi/policy.html +++ b/manual/develop/en/_modules/physbo/search/discrete_multi/policy.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/search/discrete_multi/results.html b/manual/develop/en/_modules/physbo/search/discrete_multi/results.html index fab1ccd4..3424fd1c 100644 --- a/manual/develop/en/_modules/physbo/search/discrete_multi/results.html +++ b/manual/develop/en/_modules/physbo/search/discrete_multi/results.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/search/pareto.html b/manual/develop/en/_modules/physbo/search/pareto.html index a8e7ce57..cdd6cf97 100644 --- a/manual/develop/en/_modules/physbo/search/pareto.html +++ b/manual/develop/en/_modules/physbo/search/pareto.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/search/score.html b/manual/develop/en/_modules/physbo/search/score.html index 1d8c4282..c6c380f9 100644 --- a/manual/develop/en/_modules/physbo/search/score.html +++ b/manual/develop/en/_modules/physbo/search/score.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/search/score_multi.html b/manual/develop/en/_modules/physbo/search/score_multi.html index 275ceb32..cf2ee642 100644 --- a/manual/develop/en/_modules/physbo/search/score_multi.html +++ b/manual/develop/en/_modules/physbo/search/score_multi.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/search/utility.html b/manual/develop/en/_modules/physbo/search/utility.html index 1c66f472..5a9f3a9b 100644 --- a/manual/develop/en/_modules/physbo/search/utility.html +++ b/manual/develop/en/_modules/physbo/search/utility.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_modules/physbo/variable.html b/manual/develop/en/_modules/physbo/variable.html index 3bc14db9..f8472899 100644 --- a/manual/develop/en/_modules/physbo/variable.html +++ b/manual/develop/en/_modules/physbo/variable.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/_static/basic.css b/manual/develop/en/_static/basic.css index 30fee9d0..f316efcb 100644 --- a/manual/develop/en/_static/basic.css +++ b/manual/develop/en/_static/basic.css @@ -4,7 +4,7 @@ * * Sphinx stylesheet -- basic theme. * - * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS. + * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS. * :license: BSD, see LICENSE for details. * */ diff --git a/manual/develop/en/_static/doctools.js b/manual/develop/en/_static/doctools.js index d06a71d7..4d67807d 100644 --- a/manual/develop/en/_static/doctools.js +++ b/manual/develop/en/_static/doctools.js @@ -4,7 +4,7 @@ * * Base JavaScript utilities for all Sphinx HTML documentation. * - * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS. + * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS. * :license: BSD, see LICENSE for details. * */ diff --git a/manual/develop/en/_static/language_data.js b/manual/develop/en/_static/language_data.js index 250f5665..367b8ed8 100644 --- a/manual/develop/en/_static/language_data.js +++ b/manual/develop/en/_static/language_data.js @@ -5,7 +5,7 @@ * This script contains the language-specific data used by searchtools.js, * namely the list of stopwords, stemmer, scorer and splitter. * - * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS. + * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS. * :license: BSD, see LICENSE for details. * */ @@ -13,7 +13,7 @@ var stopwords = ["a", "and", "are", "as", "at", "be", "but", "by", "for", "if", "in", "into", "is", "it", "near", "no", "not", "of", "on", "or", "such", "that", "the", "their", "then", "there", "these", "they", "this", "to", "was", "will", "with"]; -/* Non-minified version is copied as a separate JS file, is available */ +/* Non-minified version is copied as a separate JS file, if available */ /** * Porter Stemmer diff --git a/manual/develop/en/_static/searchtools.js b/manual/develop/en/_static/searchtools.js index 7918c3fa..92da3f8b 100644 --- a/manual/develop/en/_static/searchtools.js +++ b/manual/develop/en/_static/searchtools.js @@ -4,7 +4,7 @@ * * Sphinx JavaScript utilities for the full-text search. * - * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS. + * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS. * :license: BSD, see LICENSE for details. * */ @@ -99,7 +99,7 @@ const _displayItem = (item, searchTerms, highlightTerms) => { .then((data) => { if (data) listItem.appendChild( - Search.makeSearchSummary(data, searchTerms) + Search.makeSearchSummary(data, searchTerms, anchor) ); // highlight search terms in the summary if (SPHINX_HIGHLIGHT_ENABLED) // set in sphinx_highlight.js @@ -116,8 +116,8 @@ const _finishSearch = (resultCount) => { ); else Search.status.innerText = _( - `Search finished, found ${resultCount} page(s) matching the search query.` - ); + "Search finished, found ${resultCount} page(s) matching the search query." + ).replace('${resultCount}', resultCount); }; const _displayNextItem = ( results, @@ -137,6 +137,22 @@ const _displayNextItem = ( // search finished, update title and status message else _finishSearch(resultCount); }; +// Helper function used by query() to order search results. +// Each input is an array of [docname, title, anchor, descr, score, filename]. +// Order the results by score (in opposite order of appearance, since the +// `_displayNextItem` function uses pop() to retrieve items) and then alphabetically. +const _orderResultsByScoreThenName = (a, b) => { + const leftScore = a[4]; + const rightScore = b[4]; + if (leftScore === rightScore) { + // same score: sort alphabetically + const leftTitle = a[1].toLowerCase(); + const rightTitle = b[1].toLowerCase(); + if (leftTitle === rightTitle) return 0; + return leftTitle > rightTitle ? -1 : 1; // inverted is intentional + } + return leftScore > rightScore ? 1 : -1; +}; /** * Default splitQuery function. Can be overridden in ``sphinx.search`` with a @@ -160,13 +176,26 @@ const Search = { _queued_query: null, _pulse_status: -1, - htmlToText: (htmlString) => { + htmlToText: (htmlString, anchor) => { const htmlElement = new DOMParser().parseFromString(htmlString, 'text/html'); - htmlElement.querySelectorAll(".headerlink").forEach((el) => { el.remove() }); + for (const removalQuery of [".headerlinks", "script", "style"]) { + htmlElement.querySelectorAll(removalQuery).forEach((el) => { el.remove() }); + } + if (anchor) { + const anchorContent = htmlElement.querySelector(`[role="main"] ${anchor}`); + if (anchorContent) return anchorContent.textContent; + + console.warn( + `Anchored content block not found. Sphinx search tries to obtain it via DOM query '[role=main] ${anchor}'. Check your theme or template.` + ); + } + + // if anchor not specified or not found, fall back to main content const docContent = htmlElement.querySelector('[role="main"]'); - if (docContent !== undefined) return docContent.textContent; + if (docContent) return docContent.textContent; + console.warn( - "Content block not found. Sphinx search tries to obtain it via '[role=main]'. Could you check your theme or template." + "Content block not found. Sphinx search tries to obtain it via DOM query '[role=main]'. Check your theme or template." ); return ""; }, @@ -239,16 +268,7 @@ const Search = { else Search.deferQuery(query); }, - /** - * execute search (requires search index to be loaded) - */ - query: (query) => { - const filenames = Search._index.filenames; - const docNames = Search._index.docnames; - const titles = Search._index.titles; - const allTitles = Search._index.alltitles; - const indexEntries = Search._index.indexentries; - + _parseQuery: (query) => { // stem the search terms and add them to the correct list const stemmer = new Stemmer(); const searchTerms = new Set(); @@ -284,16 +304,32 @@ const Search = { // console.info("required: ", [...searchTerms]); // console.info("excluded: ", [...excludedTerms]); - // array of [docname, title, anchor, descr, score, filename] - let results = []; + return [query, searchTerms, excludedTerms, highlightTerms, objectTerms]; + }, + + /** + * execute search (requires search index to be loaded) + */ + _performSearch: (query, searchTerms, excludedTerms, highlightTerms, objectTerms) => { + const filenames = Search._index.filenames; + const docNames = Search._index.docnames; + const titles = Search._index.titles; + const allTitles = Search._index.alltitles; + const indexEntries = Search._index.indexentries; + + // Collect multiple result groups to be sorted separately and then ordered. + // Each is an array of [docname, title, anchor, descr, score, filename]. + const normalResults = []; + const nonMainIndexResults = []; + _removeChildren(document.getElementById("search-progress")); - const queryLower = query.toLowerCase(); + const queryLower = query.toLowerCase().trim(); for (const [title, foundTitles] of Object.entries(allTitles)) { - if (title.toLowerCase().includes(queryLower) && (queryLower.length >= title.length/2)) { + if (title.toLowerCase().trim().includes(queryLower) && (queryLower.length >= title.length/2)) { for (const [file, id] of foundTitles) { let score = Math.round(100 * queryLower.length / title.length) - results.push([ + normalResults.push([ docNames[file], titles[file] !== title ? `${titles[file]} > ${title}` : title, id !== null ? "#" + id : "", @@ -308,46 +344,47 @@ const Search = { // search for explicit entries in index directives for (const [entry, foundEntries] of Object.entries(indexEntries)) { if (entry.includes(queryLower) && (queryLower.length >= entry.length/2)) { - for (const [file, id] of foundEntries) { - let score = Math.round(100 * queryLower.length / entry.length) - results.push([ + for (const [file, id, isMain] of foundEntries) { + const score = Math.round(100 * queryLower.length / entry.length); + const result = [ docNames[file], titles[file], id ? "#" + id : "", null, score, filenames[file], - ]); + ]; + if (isMain) { + normalResults.push(result); + } else { + nonMainIndexResults.push(result); + } } } } // lookup as object objectTerms.forEach((term) => - results.push(...Search.performObjectSearch(term, objectTerms)) + normalResults.push(...Search.performObjectSearch(term, objectTerms)) ); // lookup as search terms in fulltext - results.push(...Search.performTermsSearch(searchTerms, excludedTerms)); + normalResults.push(...Search.performTermsSearch(searchTerms, excludedTerms)); // let the scorer override scores with a custom scoring function - if (Scorer.score) results.forEach((item) => (item[4] = Scorer.score(item))); - - // now sort the results by score (in opposite order of appearance, since the - // display function below uses pop() to retrieve items) and then - // alphabetically - results.sort((a, b) => { - const leftScore = a[4]; - const rightScore = b[4]; - if (leftScore === rightScore) { - // same score: sort alphabetically - const leftTitle = a[1].toLowerCase(); - const rightTitle = b[1].toLowerCase(); - if (leftTitle === rightTitle) return 0; - return leftTitle > rightTitle ? -1 : 1; // inverted is intentional - } - return leftScore > rightScore ? 1 : -1; - }); + if (Scorer.score) { + normalResults.forEach((item) => (item[4] = Scorer.score(item))); + nonMainIndexResults.forEach((item) => (item[4] = Scorer.score(item))); + } + + // Sort each group of results by score and then alphabetically by name. + normalResults.sort(_orderResultsByScoreThenName); + nonMainIndexResults.sort(_orderResultsByScoreThenName); + + // Combine the result groups in (reverse) order. + // Non-main index entries are typically arbitrary cross-references, + // so display them after other results. + let results = [...nonMainIndexResults, ...normalResults]; // remove duplicate search results // note the reversing of results, so that in the case of duplicates, the highest-scoring entry is kept @@ -361,7 +398,12 @@ const Search = { return acc; }, []); - results = results.reverse(); + return results.reverse(); + }, + + query: (query) => { + const [searchQuery, searchTerms, excludedTerms, highlightTerms, objectTerms] = Search._parseQuery(query); + const results = Search._performSearch(searchQuery, searchTerms, excludedTerms, highlightTerms, objectTerms); // for debugging //Search.lastresults = results.slice(); // a copy @@ -466,14 +508,18 @@ const Search = { // add support for partial matches if (word.length > 2) { const escapedWord = _escapeRegExp(word); - Object.keys(terms).forEach((term) => { - if (term.match(escapedWord) && !terms[word]) - arr.push({ files: terms[term], score: Scorer.partialTerm }); - }); - Object.keys(titleTerms).forEach((term) => { - if (term.match(escapedWord) && !titleTerms[word]) - arr.push({ files: titleTerms[word], score: Scorer.partialTitle }); - }); + if (!terms.hasOwnProperty(word)) { + Object.keys(terms).forEach((term) => { + if (term.match(escapedWord)) + arr.push({ files: terms[term], score: Scorer.partialTerm }); + }); + } + if (!titleTerms.hasOwnProperty(word)) { + Object.keys(titleTerms).forEach((term) => { + if (term.match(escapedWord)) + arr.push({ files: titleTerms[term], score: Scorer.partialTitle }); + }); + } } // no match but word was a required one @@ -496,9 +542,8 @@ const Search = { // create the mapping files.forEach((file) => { - if (fileMap.has(file) && fileMap.get(file).indexOf(word) === -1) - fileMap.get(file).push(word); - else fileMap.set(file, [word]); + if (!fileMap.has(file)) fileMap.set(file, [word]); + else if (fileMap.get(file).indexOf(word) === -1) fileMap.get(file).push(word); }); }); @@ -549,8 +594,8 @@ const Search = { * search summary for a given text. keywords is a list * of stemmed words. */ - makeSearchSummary: (htmlText, keywords) => { - const text = Search.htmlToText(htmlText); + makeSearchSummary: (htmlText, keywords, anchor) => { + const text = Search.htmlToText(htmlText, anchor); if (text === "") return null; const textLower = text.toLowerCase(); diff --git a/manual/develop/en/acknowledgement.html b/manual/develop/en/acknowledgement.html index 6731ba65..1f281820 100644 --- a/manual/develop/en/acknowledgement.html +++ b/manual/develop/en/acknowledgement.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/algorithm.html b/manual/develop/en/algorithm.html index 1bac4b5d..e4372eda 100644 --- a/manual/develop/en/algorithm.html +++ b/manual/develop/en/algorithm.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/api/modules.html b/manual/develop/en/api/modules.html index 9c94128a..b5808c0a 100644 --- a/manual/develop/en/api/modules.html +++ b/manual/develop/en/api/modules.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/api/physbo.blm.basis.fourier.html b/manual/develop/en/api/physbo.blm.basis.fourier.html index 45c1abe8..50ef3211 100644 --- a/manual/develop/en/api/physbo.blm.basis.fourier.html +++ b/manual/develop/en/api/physbo.blm.basis.fourier.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/api/physbo.blm.basis.html b/manual/develop/en/api/physbo.blm.basis.html index 1569d5fc..0c8d727e 100644 --- a/manual/develop/en/api/physbo.blm.basis.html +++ b/manual/develop/en/api/physbo.blm.basis.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/api/physbo.blm.core.html b/manual/develop/en/api/physbo.blm.core.html index 2f0ef770..c2e1877a 100644 --- a/manual/develop/en/api/physbo.blm.core.html +++ b/manual/develop/en/api/physbo.blm.core.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/api/physbo.blm.core.model.html b/manual/develop/en/api/physbo.blm.core.model.html index ff3c8b7f..746d1cc7 100644 --- a/manual/develop/en/api/physbo.blm.core.model.html +++ b/manual/develop/en/api/physbo.blm.core.model.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/api/physbo.blm.html b/manual/develop/en/api/physbo.blm.html index bf2b3560..50c9d14b 100644 --- a/manual/develop/en/api/physbo.blm.html +++ b/manual/develop/en/api/physbo.blm.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/api/physbo.blm.inf.exact.html b/manual/develop/en/api/physbo.blm.inf.exact.html index 40c76dc7..d655be81 100644 --- a/manual/develop/en/api/physbo.blm.inf.exact.html +++ b/manual/develop/en/api/physbo.blm.inf.exact.html @@ -16,7 +16,7 @@ - + @@ -112,7 +112,7 @@
Parameters:
diff --git a/manual/develop/en/api/physbo.gp.core.prior.html b/manual/develop/en/api/physbo.gp.core.prior.html index 740b8832..eb0a61d5 100644 --- a/manual/develop/en/api/physbo.gp.core.prior.html +++ b/manual/develop/en/api/physbo.gp.core.prior.html @@ -16,7 +16,7 @@ - + @@ -222,7 +222,7 @@
Parameters:
Return type:
diff --git a/manual/develop/en/api/physbo.gp.cov.gauss.html b/manual/develop/en/api/physbo.gp.cov.gauss.html index a783a32d..934aadc0 100644 --- a/manual/develop/en/api/physbo.gp.cov.gauss.html +++ b/manual/develop/en/api/physbo.gp.cov.gauss.html @@ -16,7 +16,7 @@ - + @@ -118,8 +118,8 @@
Parameters:
Returns:
@@ -201,7 +201,7 @@
Parameters:
Returns:
diff --git a/manual/develop/en/api/physbo.gp.cov.html b/manual/develop/en/api/physbo.gp.cov.html index c7e79127..b209851c 100644 --- a/manual/develop/en/api/physbo.gp.cov.html +++ b/manual/develop/en/api/physbo.gp.cov.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/api/physbo.gp.html b/manual/develop/en/api/physbo.gp.html index 8594feab..c48852bd 100644 --- a/manual/develop/en/api/physbo.gp.html +++ b/manual/develop/en/api/physbo.gp.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/api/physbo.gp.inf.exact.html b/manual/develop/en/api/physbo.gp.inf.exact.html index ac86f1ad..9f41a0eb 100644 --- a/manual/develop/en/api/physbo.gp.inf.exact.html +++ b/manual/develop/en/api/physbo.gp.inf.exact.html @@ -16,7 +16,7 @@ - + @@ -112,7 +112,7 @@
Parameters:
    -

  • gp (physbo.gp.core.model) –

    • +

  • gp (physbo.gp.core.model)

  • X (numpy.ndarray) – N x d dimensional matrix. Each row of X denotes the d-dimensional feature vector of search candidate.

  • t (numpy.ndarray) – N dimensional array. The negative energy of each search candidate (value of the objective function to be optimized).

    • @@ -135,7 +135,7 @@
    Parameters:
      -

    • gp (physbo.gp.core.model) –

      • +

    • gp (physbo.gp.core.model)

    • X (numpy.ndarray) – N x d dimensional matrix. Each row of X denotes the d-dimensional feature vector of search candidate.

    • t (numpy.ndarray) – N dimensional array. The negative energy of each search candidate (value of the objective function to be optimized).

      • @@ -158,7 +158,7 @@
      Parameters:
        -

      • gp (physbo.gp.core.model) –

        • +

      • gp (physbo.gp.core.model)

      • X (numpy.ndarray) – N x d dimensional matrix. Each row of X denotes the d-dimensional feature vector of search candidate.

      • Z (numpy.ndarray) – N x d dimensional matrix. Each row of Z denotes the d-dimensional feature vector of tests.

      • params (numpy.ndarray) – Parameters.

        • @@ -178,7 +178,7 @@
        Parameters:
          -

        • gp (physbo.gp.core.model) –

          • +

        • gp (physbo.gp.core.model)

        • X (numpy.ndarray) – N x d dimensional matrix. Each row of X denotes the d-dimensional feature vector of search candidate.

        • Z (numpy.ndarray) – N x d dimensional matrix. Each row of Z denotes the d-dimensional feature vector of tests.

        • params (numpy.ndarray) – Parameters.

          • @@ -196,7 +196,7 @@
          Parameters:
            -

          • gp (physbo.gp.core.model) –

            • +

          • gp (physbo.gp.core.model)

          • X (numpy.ndarray) – N x d dimensional matrix. Each row of X denotes the d-dimensional feature vector of search candidate.

          • t (numpy.ndarray) – N dimensional array. The negative energy of each search candidate (value of the objective function to be optimized).

            • diff --git a/manual/develop/en/api/physbo.gp.inf.html b/manual/develop/en/api/physbo.gp.inf.html index 67a7305c..259eaa41 100644 --- a/manual/develop/en/api/physbo.gp.inf.html +++ b/manual/develop/en/api/physbo.gp.inf.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/api/physbo.gp.lik.gauss.html b/manual/develop/en/api/physbo.gp.lik.gauss.html index 72f9758d..d70f0178 100644 --- a/manual/develop/en/api/physbo.gp.lik.gauss.html +++ b/manual/develop/en/api/physbo.gp.lik.gauss.html @@ -16,7 +16,7 @@ - + @@ -134,7 +134,7 @@
            Parameters:
              -

            • num_data (int) –

              • +

            • num_data (int)

            • params (numpy.ndarray) – Parameters for optimization. Array of real elements of size (n,), where ‘n’ is the number of independent variables.

            @@ -155,7 +155,7 @@
            Parameters:
              -

            • num_data (int) –

              • +

            • num_data (int)

            • params (numpy.ndarray) – Parameters for optimization. Array of real elements of size (n,), where ‘n’ is the number of independent variables.

            @@ -189,7 +189,7 @@

            Sampling by adding noise

            Parameters:
            -

            fmean (numpy.ndarray) –

            +

            fmean (numpy.ndarray)

            diff --git a/manual/develop/en/api/physbo.gp.lik.html b/manual/develop/en/api/physbo.gp.lik.html index 4dc07adb..1d450d49 100644 --- a/manual/develop/en/api/physbo.gp.lik.html +++ b/manual/develop/en/api/physbo.gp.lik.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/api/physbo.gp.mean.const.html b/manual/develop/en/api/physbo.gp.mean.const.html index c02b0d7e..d39b273c 100644 --- a/manual/develop/en/api/physbo.gp.mean.const.html +++ b/manual/develop/en/api/physbo.gp.mean.const.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/api/physbo.gp.mean.html b/manual/develop/en/api/physbo.gp.mean.html index 7b4f9a18..6c31b209 100644 --- a/manual/develop/en/api/physbo.gp.mean.html +++ b/manual/develop/en/api/physbo.gp.mean.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/api/physbo.gp.mean.zero.html b/manual/develop/en/api/physbo.gp.mean.zero.html index d9a44f08..53040fb8 100644 --- a/manual/develop/en/api/physbo.gp.mean.zero.html +++ b/manual/develop/en/api/physbo.gp.mean.zero.html @@ -16,7 +16,7 @@ - + @@ -149,7 +149,7 @@

            Not defined

            Parameters:
            -

            params –

            +

            params

            diff --git a/manual/develop/en/api/physbo.gp.predictor.html b/manual/develop/en/api/physbo.gp.predictor.html index db141aeb..c16fa320 100644 --- a/manual/develop/en/api/physbo.gp.predictor.html +++ b/manual/develop/en/api/physbo.gp.predictor.html @@ -16,7 +16,7 @@ - + @@ -116,8 +116,8 @@
            Parameters:
              -

            • args –

              • -

            • kwds –

              • +

            • args

              • +

            • kwds

            @@ -143,8 +143,8 @@
            Parameters:
              -

            • args –

              • -

            • kwds –

              • +

            • args

              • +

            • kwds

            @@ -191,8 +191,8 @@
            Parameters:
              -

            • args –

              • -

            • kwds –

              • +

            • args

              • +

            • kwds

            @@ -254,8 +254,8 @@
            Parameters:
              -

            • args –

              • -

            • kwds –

              • +

            • args

              • +

            • kwds

            diff --git a/manual/develop/en/api/physbo.html b/manual/develop/en/api/physbo.html index ce00f229..2f70df5f 100644 --- a/manual/develop/en/api/physbo.html +++ b/manual/develop/en/api/physbo.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/api/physbo.misc.centering.html b/manual/develop/en/api/physbo.misc.centering.html index 7a910234..4b57afbc 100644 --- a/manual/develop/en/api/physbo.misc.centering.html +++ b/manual/develop/en/api/physbo.misc.centering.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/api/physbo.misc.gauss_elim.html b/manual/develop/en/api/physbo.misc.gauss_elim.html index f3ea2de4..e7539639 100644 --- a/manual/develop/en/api/physbo.misc.gauss_elim.html +++ b/manual/develop/en/api/physbo.misc.gauss_elim.html @@ -16,7 +16,7 @@ - + @@ -111,9 +111,9 @@
            Parameters:
              -

            • U ((M, M) array_like) –

              • -

            • matrix (A triangular) –

              • -

            • t ((M,) or (M, N) array_like) –

              • +

            • U ((M, M) array_like)

              • +

            • matrix (A triangular)

              • +

            • t ((M,) or (M, N) array_like)

            Returns:
            diff --git a/manual/develop/en/api/physbo.misc.html b/manual/develop/en/api/physbo.misc.html index 996bd2aa..99838631 100644 --- a/manual/develop/en/api/physbo.misc.html +++ b/manual/develop/en/api/physbo.misc.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/api/physbo.misc.set_config.html b/manual/develop/en/api/physbo.misc.set_config.html index 4427afdf..302688d5 100644 --- a/manual/develop/en/api/physbo.misc.set_config.html +++ b/manual/develop/en/api/physbo.misc.set_config.html @@ -16,7 +16,7 @@ - + @@ -113,7 +113,7 @@

            Loading information of configuration from config._sectoins[‘adam’].

            Parameters:
            -

            config (physbo.misc.set_config object) –

            +

            config (physbo.misc.set_config object)

            @@ -136,7 +136,7 @@

            Loading information of configuration from config._sectoins[‘batch’].

            Parameters:
            -

            config (physbo.misc.set_config object) –

            +

            config (physbo.misc.set_config object)

          @@ -155,7 +155,7 @@

          Return boolean.

          Parameters:
          -

          str (str or boolean) –

          +

          str (str or boolean)

          Return type:

          True or False

          @@ -173,7 +173,7 @@

          Loading information of configuration from config._sectoins[‘learning’].

          Parameters:
          -

          config (physbo.misc.set_config object) –

          +

          config (physbo.misc.set_config object)

          @@ -196,7 +196,7 @@

          Loading information of configuration from config._sectoins[‘online’].

          Parameters:
          -

          config (physbo.misc.set_config object) –

          +

          config (physbo.misc.set_config object)

        @@ -219,7 +219,7 @@

        Loading information of configuration from config._sectoins[‘search’].

        Parameters:
        -

        config (physbo.misc.set_config object) –

        +

        config (physbo.misc.set_config object)

      @@ -243,8 +243,8 @@
      Parameters:
        -

      • file_name (str) –

        • -

      • configuration. (An input file name of) –

        • +

      • file_name (str)

        • +

      • configuration. (An input file name of)

      diff --git a/manual/develop/en/api/physbo.opt.adam.html b/manual/develop/en/api/physbo.opt.adam.html index 5388704d..f19d093e 100644 --- a/manual/develop/en/api/physbo.opt.adam.html +++ b/manual/develop/en/api/physbo.opt.adam.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/api/physbo.opt.html b/manual/develop/en/api/physbo.opt.html index 4d46db46..222c16e1 100644 --- a/manual/develop/en/api/physbo.opt.html +++ b/manual/develop/en/api/physbo.opt.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/api/physbo.predictor.html b/manual/develop/en/api/physbo.predictor.html index 52f04b99..dabd2a20 100644 --- a/manual/develop/en/api/physbo.predictor.html +++ b/manual/develop/en/api/physbo.predictor.html @@ -16,7 +16,7 @@ - + @@ -111,8 +111,8 @@
      Parameters:
        -

      • args –

        • -

      • kwds –

        • +

      • args

        • +

      • kwds

      @@ -126,8 +126,8 @@
      Parameters:
        -

      • args –

        • -

      • kwds –

        • +

      • args

        • +

      • kwds

      @@ -141,8 +141,8 @@
      Parameters:
        -

      • args –

        • -

      • kwds –

        • +

      • args

        • +

      • kwds

      @@ -156,8 +156,8 @@
      Parameters:
        -

      • args –

        • -

      • kwds –

        • +

      • args

        • +

      • kwds

      @@ -171,8 +171,8 @@
      Parameters:
        -

      • args –

        • -

      • kwds –

        • +

      • args

        • +

      • kwds

      @@ -186,8 +186,8 @@
      Parameters:
        -

      • args –

        • -

      • kwds –

        • +

      • args

        • +

      • kwds

      @@ -201,8 +201,8 @@
      Parameters:
        -

      • args –

        • -

      • kwds –

        • +

      • args

        • +

      • kwds

      @@ -216,8 +216,8 @@
      Parameters:
        -

      • args –

        • -

      • kwds –

        • +

      • args

        • +

      • kwds

      @@ -231,8 +231,8 @@
      Parameters:
        -

      • args –

        • -

      • kwds –

        • +

      • args

        • +

      • kwds

      @@ -258,8 +258,8 @@
      Parameters:
        -

      • args –

        • -

      • kwds –

        • +

      • args

        • +

      • kwds

      @@ -285,8 +285,8 @@
      Parameters:
        -

      • args –

        • -

      • kwds –

        • +

      • args

        • +

      • kwds

      diff --git a/manual/develop/en/api/physbo.search.discrete.html b/manual/develop/en/api/physbo.search.discrete.html index a8ef8b7c..86d20ece 100644 --- a/manual/develop/en/api/physbo.search.discrete.html +++ b/manual/develop/en/api/physbo.search.discrete.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/api/physbo.search.discrete.policy.html b/manual/develop/en/api/physbo.search.discrete.policy.html index 33566741..028acca1 100644 --- a/manual/develop/en/api/physbo.search.discrete.policy.html +++ b/manual/develop/en/api/physbo.search.discrete.policy.html @@ -16,7 +16,7 @@ - + @@ -268,7 +268,7 @@
      Parameters:

      • seed (int) – seed number

        • -

      • ------- –

        • +

      • -------

    diff --git a/manual/develop/en/api/physbo.search.discrete.results.html b/manual/develop/en/api/physbo.search.discrete.results.html index b10fc266..0b8a1701 100644 --- a/manual/develop/en/api/physbo.search.discrete.results.html +++ b/manual/develop/en/api/physbo.search.discrete.results.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/api/physbo.search.discrete_multi.html b/manual/develop/en/api/physbo.search.discrete_multi.html index bc2a0b1b..eb3441aa 100644 --- a/manual/develop/en/api/physbo.search.discrete_multi.html +++ b/manual/develop/en/api/physbo.search.discrete_multi.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/api/physbo.search.discrete_multi.policy.html b/manual/develop/en/api/physbo.search.discrete_multi.policy.html index 3de4b937..5c21c709 100644 --- a/manual/develop/en/api/physbo.search.discrete_multi.policy.html +++ b/manual/develop/en/api/physbo.search.discrete_multi.policy.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/api/physbo.search.discrete_multi.results.html b/manual/develop/en/api/physbo.search.discrete_multi.results.html index 5b517f06..3fddf2d0 100644 --- a/manual/develop/en/api/physbo.search.discrete_multi.results.html +++ b/manual/develop/en/api/physbo.search.discrete_multi.results.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/api/physbo.search.html b/manual/develop/en/api/physbo.search.html index 6d7b4b71..4ffb904d 100644 --- a/manual/develop/en/api/physbo.search.html +++ b/manual/develop/en/api/physbo.search.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/api/physbo.search.pareto.html b/manual/develop/en/api/physbo.search.pareto.html index c70dd02d..4e3bdeba 100644 --- a/manual/develop/en/api/physbo.search.pareto.html +++ b/manual/develop/en/api/physbo.search.pareto.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/api/physbo.search.score.html b/manual/develop/en/api/physbo.search.score.html index 4877b653..ed8a1271 100644 --- a/manual/develop/en/api/physbo.search.score.html +++ b/manual/develop/en/api/physbo.search.score.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/api/physbo.search.score_multi.html b/manual/develop/en/api/physbo.search.score_multi.html index 643b0d30..d8c6a58c 100644 --- a/manual/develop/en/api/physbo.search.score_multi.html +++ b/manual/develop/en/api/physbo.search.score_multi.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/api/physbo.search.utility.html b/manual/develop/en/api/physbo.search.utility.html index d8f80b12..72bc36f8 100644 --- a/manual/develop/en/api/physbo.search.utility.html +++ b/manual/develop/en/api/physbo.search.utility.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/api/physbo.variable.html b/manual/develop/en/api/physbo.variable.html index 7eb752b2..13f3d043 100644 --- a/manual/develop/en/api/physbo.variable.html +++ b/manual/develop/en/api/physbo.variable.html @@ -16,7 +16,7 @@ - + @@ -111,7 +111,7 @@

    • X (numpy array) – N x d dimensional matrix. Each row of X denotes the d-dimensional feature vector of each search candidate.

    • t (numpy array) – N dimensional array. The negative energy of each search candidate (value of the objective function to be optimized).

      • -

    • Z –

      • +

    • Z

@@ -134,7 +134,7 @@

Adding variable Z. If self.Z is None, self.Z is set as Z.

Parameters:
-

Z –

+

Z

diff --git a/manual/develop/en/contact.html b/manual/develop/en/contact.html index f935f714..6c9c5240 100644 --- a/manual/develop/en/contact.html +++ b/manual/develop/en/contact.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/genindex.html b/manual/develop/en/genindex.html index fa84fa9a..57666ba0 100644 --- a/manual/develop/en/genindex.html +++ b/manual/develop/en/genindex.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/en/index.html b/manual/develop/en/index.html index 0d3c7bda..3344fcef 100644 --- a/manual/develop/en/index.html +++ b/manual/develop/en/index.html @@ -16,9 +16,11 @@ - + + + diff --git a/manual/develop/en/install.html b/manual/develop/en/install.html index fbfc7b0a..ae55d0ad 100644 --- a/manual/develop/en/install.html +++ b/manual/develop/en/install.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/introduction.html b/manual/develop/en/introduction.html index 41aa16bf..dd3b543d 100644 --- a/manual/develop/en/introduction.html +++ b/manual/develop/en/introduction.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/en/notebook/index.html b/manual/develop/en/notebook/index.html index b967a2fd..c8612482 100644 --- a/manual/develop/en/notebook/index.html +++ b/manual/develop/en/notebook/index.html @@ -16,9 +16,11 @@ - + + + diff --git a/manual/develop/en/notebook/tutorial_Gaussian_process.html b/manual/develop/en/notebook/tutorial_Gaussian_process.html index f273ae71..ccdd7a6f 100644 --- a/manual/develop/en/notebook/tutorial_Gaussian_process.html +++ b/manual/develop/en/notebook/tutorial_Gaussian_process.html @@ -17,7 +17,7 @@ - + diff --git a/manual/develop/en/notebook/tutorial_basic.html b/manual/develop/en/notebook/tutorial_basic.html index b875f0f2..396d115f 100644 --- a/manual/develop/en/notebook/tutorial_basic.html +++ b/manual/develop/en/notebook/tutorial_basic.html @@ -17,7 +17,7 @@ - + diff --git a/manual/develop/en/notebook/tutorial_basic_org.html b/manual/develop/en/notebook/tutorial_basic_org.html 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[55, null]], "Basic usage": [[53, "basic-usage"]], "Install": [[53, "install"]], "Required Packages": [[53, "required-packages"]], "Download and Install": [[53, "download-and-install"]], "Uninstall": [[53, "uninstall"]], "Basic structures": [[53, "basic-structures"]], "Calculation flow": [[53, "calculation-flow"]], "Introduction": [[54, "introduction"], [57, "Introduction"], [58, "Introduction"]], "About PHYSBO": [[54, "about-physbo"]], "Citation": [[54, "citation"]], "Main Developers": [[54, "main-developers"]], "License": [[54, "license"]], "Tutorials": [[55, "tutorials"]], "Gaussian process": [[56, "Gaussian-process"]], "Preparation of search candidate data": [[56, "Preparation-of-search-candidate-data"], [58, "Preparation-of-search-candidate-data"], [59, "Preparation-of-search-candidate-data"], [60, "Preparation-of-search-candidate-data"]], "Defining training data": [[56, "Defining-training-data"]], "Learning and Prediction of Gaussian Processes": [[56, 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"Parallelization"]], "Definition of simulator": [[58, "Definition-of-simulator"], [59, "Definition-of-simulator"], [60, "Definition-of-simulator"], [61, "Definition-of-simulator"]], "Running PHYSBO interactively": [[59, "Running-PHYSBO-interactively"]], "Executing optimization": [[59, "Executing-optimization"]], "Suspend and restart": [[59, "Suspend-and-restart"]], "Multi-objective optimization": [[60, "Multi-objective-optimization"]], "Test functions": [[60, "Test-functions"]], "Plotting the functions": [[60, "Plotting-the-functions"]], "First objective function": [[60, "First-objective-function"]], "Second objective function": [[60, "Second-objective-function"]], "Performing optimizations.": [[60, "Performing-optimizations."]], "Random search": [[60, "Random-search"]], "Checking results": [[60, "Checking-results"], [61, "Checking-results"]], "Obtaining the Pareto solution": [[60, "Obtaining-the-Pareto-solution"]], "Plotting the solution (evaluated value)": [[60, "Plotting-the-solution-(evaluated-value)"]], "Calculate the volume of the dominated region": [[60, "Calculate-the-volume-of-the-dominated-region"]], "HVPI (HyperVolume-based Probability of Improvement)": [[60, "HVPI-(HyperVolume-based-Probability-of-Improvement)"]], "Plotting the Pareto solution": [[60, "Plotting-the-Pareto-solution"], [60, "id1"], [60, "id3"]], "Volume of dominated region": [[60, "Volume-of-dominated-region"], [60, "id2"], [60, "id4"]], "EHVI (Expected Hyper-Volume Improvement)": [[60, "EHVI-(Expected-Hyper-Volume-Improvement)"]], "TS (Thompson Sampling)": [[60, "TS-(Thompson-Sampling)"]], "Appendix: Full search": [[60, "Appendix:-Full-search"]], "Search multiple candidates at once": [[61, "Search-multiple-candidates-at-once"]], "Prepare the search candidate data": [[61, "Prepare-the-search-candidate-data"], [62, "Prepare-the-search-candidate-data"]], "Performing optimizations": [[61, "Performing-optimizations"]], "Restart calculations by reading existing calculation results": [[62, "Restart-calculations-by-reading-existing-calculation-results"]], "Preparing the precomputed data": [[62, "Preparing-the-precomputed-data"]], "Register action ID (parameter) and evaluation value to PHYSBO.": [[62, "Register-action-ID-(parameter)-and-evaluation-value-to-PHYSBO."]], "Get the next parameter to be executed from PHYSBO": [[62, "Get-the-next-parameter-to-be-executed-from-PHYSBO"]]}, "indexentries": {"module": [[3, "module-physbo"], [4, "module-physbo.blm"], [5, "module-physbo.blm.basis"], [6, "module-physbo.blm.basis.fourier"], [7, "module-physbo.blm.core"], [8, "module-physbo.blm.core.model"], [9, "module-physbo.blm.inf"], [10, "module-physbo.blm.inf.exact"], [11, "module-physbo.blm.lik"], [12, "module-physbo.blm.lik.gauss"], [13, "module-physbo.blm.lik.linear"], [14, "module-physbo.blm.predictor"], [15, "module-physbo.blm.prior"], [16, "module-physbo.blm.prior.gauss"], [17, "module-physbo.gp"], [18, "module-physbo.gp.core"], [19, 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method)": [[50, "physbo.variable.variable.delete_t"]], "get_subset() (physbo.variable.variable method)": [[50, "physbo.variable.variable.get_subset"]], "load() (physbo.variable.variable method)": [[50, "physbo.variable.variable.load"]], "physbo.variable": [[50, "module-physbo.variable"]], "save() (physbo.variable.variable method)": [[50, "physbo.variable.variable.save"]], "variable (class in physbo.variable)": [[50, "physbo.variable.variable"]]}}) \ No newline at end of file +Search.setIndex({"alltitles": {"About PHYSBO": [[54, "about-physbo"]], "Accelerating Bayesian Optimization with PHYSBO": [[1, "accelerating-bayesian-optimization-with-physbo"]], "Acknowledgement": [[0, "acknowledgement"]], "Acquisition function": [[57, "Acquisition-function"]], "Algorithm": [[1, "algorithm"]], "Appendix: Full search": [[60, "Appendix:-Full-search"]], "Basic structures": [[53, "basic-structures"]], "Basic usage": [[53, "basic-usage"]], "Basic usage of PHYSBO": [[57, "Basic-usage-of-PHYSBO"], [58, 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+ diff --git a/manual/develop/ja/_modules/physbo/blm/prior/gauss.html b/manual/develop/ja/_modules/physbo/blm/prior/gauss.html index 518daaa6..ec0cbbc1 100644 --- a/manual/develop/ja/_modules/physbo/blm/prior/gauss.html +++ b/manual/develop/ja/_modules/physbo/blm/prior/gauss.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/ja/_modules/physbo/gp/core/learning.html b/manual/develop/ja/_modules/physbo/gp/core/learning.html index 7d984fd9..9fcbd3e2 100644 --- a/manual/develop/ja/_modules/physbo/gp/core/learning.html +++ b/manual/develop/ja/_modules/physbo/gp/core/learning.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/ja/_modules/physbo/gp/core/model.html b/manual/develop/ja/_modules/physbo/gp/core/model.html index 0395b2dd..b881088e 100644 --- a/manual/develop/ja/_modules/physbo/gp/core/model.html +++ b/manual/develop/ja/_modules/physbo/gp/core/model.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/ja/_modules/physbo/gp/core/prior.html b/manual/develop/ja/_modules/physbo/gp/core/prior.html index 75761823..495ff2da 100644 --- a/manual/develop/ja/_modules/physbo/gp/core/prior.html +++ b/manual/develop/ja/_modules/physbo/gp/core/prior.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/ja/_modules/physbo/gp/cov/gauss.html b/manual/develop/ja/_modules/physbo/gp/cov/gauss.html index e2d84680..0b4f2d1e 100644 --- a/manual/develop/ja/_modules/physbo/gp/cov/gauss.html +++ b/manual/develop/ja/_modules/physbo/gp/cov/gauss.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/ja/_modules/physbo/gp/inf/exact.html b/manual/develop/ja/_modules/physbo/gp/inf/exact.html index dfbaddf2..8cd296a5 100644 --- a/manual/develop/ja/_modules/physbo/gp/inf/exact.html +++ b/manual/develop/ja/_modules/physbo/gp/inf/exact.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/ja/_modules/physbo/gp/lik/gauss.html b/manual/develop/ja/_modules/physbo/gp/lik/gauss.html index 00d74980..c50fc34c 100644 --- a/manual/develop/ja/_modules/physbo/gp/lik/gauss.html +++ b/manual/develop/ja/_modules/physbo/gp/lik/gauss.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/ja/_modules/physbo/gp/mean/const.html b/manual/develop/ja/_modules/physbo/gp/mean/const.html index 148c47ec..77d38dc5 100644 --- a/manual/develop/ja/_modules/physbo/gp/mean/const.html +++ b/manual/develop/ja/_modules/physbo/gp/mean/const.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/ja/_modules/physbo/gp/mean/zero.html b/manual/develop/ja/_modules/physbo/gp/mean/zero.html index b00d93cd..121d0e71 100644 --- a/manual/develop/ja/_modules/physbo/gp/mean/zero.html +++ b/manual/develop/ja/_modules/physbo/gp/mean/zero.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/ja/_modules/physbo/gp/predictor.html b/manual/develop/ja/_modules/physbo/gp/predictor.html index f28446b7..1abf50e0 100644 --- a/manual/develop/ja/_modules/physbo/gp/predictor.html +++ b/manual/develop/ja/_modules/physbo/gp/predictor.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/ja/_modules/physbo/misc/centering.html b/manual/develop/ja/_modules/physbo/misc/centering.html index 48d27431..45974c63 100644 --- a/manual/develop/ja/_modules/physbo/misc/centering.html +++ b/manual/develop/ja/_modules/physbo/misc/centering.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/ja/_modules/physbo/misc/gauss_elim.html b/manual/develop/ja/_modules/physbo/misc/gauss_elim.html index 28c45b1a..c0a1e665 100644 --- a/manual/develop/ja/_modules/physbo/misc/gauss_elim.html +++ b/manual/develop/ja/_modules/physbo/misc/gauss_elim.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/ja/_modules/physbo/misc/set_config.html b/manual/develop/ja/_modules/physbo/misc/set_config.html index d9883a68..77a1b021 100644 --- a/manual/develop/ja/_modules/physbo/misc/set_config.html +++ b/manual/develop/ja/_modules/physbo/misc/set_config.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/ja/_modules/physbo/opt/adam.html b/manual/develop/ja/_modules/physbo/opt/adam.html index c97d0512..73c85b14 100644 --- a/manual/develop/ja/_modules/physbo/opt/adam.html +++ b/manual/develop/ja/_modules/physbo/opt/adam.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/ja/_modules/physbo/predictor.html b/manual/develop/ja/_modules/physbo/predictor.html index b2ac5c5a..80d97c5e 100644 --- a/manual/develop/ja/_modules/physbo/predictor.html +++ b/manual/develop/ja/_modules/physbo/predictor.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/ja/_modules/physbo/search/discrete/policy.html b/manual/develop/ja/_modules/physbo/search/discrete/policy.html index f3287a8e..8683473b 100644 --- a/manual/develop/ja/_modules/physbo/search/discrete/policy.html +++ b/manual/develop/ja/_modules/physbo/search/discrete/policy.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/ja/_modules/physbo/search/discrete/results.html b/manual/develop/ja/_modules/physbo/search/discrete/results.html index fdd2ca0c..16722c1e 100644 --- a/manual/develop/ja/_modules/physbo/search/discrete/results.html +++ b/manual/develop/ja/_modules/physbo/search/discrete/results.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/ja/_modules/physbo/search/discrete_multi/policy.html b/manual/develop/ja/_modules/physbo/search/discrete_multi/policy.html index 730d3170..2a58616d 100644 --- a/manual/develop/ja/_modules/physbo/search/discrete_multi/policy.html +++ b/manual/develop/ja/_modules/physbo/search/discrete_multi/policy.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/ja/_modules/physbo/search/discrete_multi/results.html b/manual/develop/ja/_modules/physbo/search/discrete_multi/results.html index ee50dd0e..9fd094bb 100644 --- a/manual/develop/ja/_modules/physbo/search/discrete_multi/results.html +++ b/manual/develop/ja/_modules/physbo/search/discrete_multi/results.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/ja/_modules/physbo/search/pareto.html b/manual/develop/ja/_modules/physbo/search/pareto.html index 25a4b7df..644363e1 100644 --- a/manual/develop/ja/_modules/physbo/search/pareto.html +++ b/manual/develop/ja/_modules/physbo/search/pareto.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/ja/_modules/physbo/search/score.html b/manual/develop/ja/_modules/physbo/search/score.html index caae9101..2f211db8 100644 --- a/manual/develop/ja/_modules/physbo/search/score.html +++ b/manual/develop/ja/_modules/physbo/search/score.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/ja/_modules/physbo/search/score_multi.html b/manual/develop/ja/_modules/physbo/search/score_multi.html index c2b26566..bc077d6c 100644 --- a/manual/develop/ja/_modules/physbo/search/score_multi.html +++ b/manual/develop/ja/_modules/physbo/search/score_multi.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/ja/_modules/physbo/search/utility.html b/manual/develop/ja/_modules/physbo/search/utility.html index 8eda89ee..a9569049 100644 --- a/manual/develop/ja/_modules/physbo/search/utility.html +++ b/manual/develop/ja/_modules/physbo/search/utility.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/ja/_modules/physbo/variable.html b/manual/develop/ja/_modules/physbo/variable.html index a488dcf4..485b3835 100644 --- a/manual/develop/ja/_modules/physbo/variable.html +++ b/manual/develop/ja/_modules/physbo/variable.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/ja/_static/basic.css b/manual/develop/ja/_static/basic.css index 30fee9d0..f316efcb 100644 --- a/manual/develop/ja/_static/basic.css +++ b/manual/develop/ja/_static/basic.css @@ -4,7 +4,7 @@ * * Sphinx stylesheet -- basic theme. * - * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS. + * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS. * :license: BSD, see LICENSE for details. * */ diff --git a/manual/develop/ja/_static/doctools.js b/manual/develop/ja/_static/doctools.js index d06a71d7..4d67807d 100644 --- a/manual/develop/ja/_static/doctools.js +++ b/manual/develop/ja/_static/doctools.js @@ -4,7 +4,7 @@ * * Base JavaScript utilities for all Sphinx HTML documentation. * - * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS. + * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS. * :license: BSD, see LICENSE for details. * */ diff --git a/manual/develop/ja/_static/language_data.js b/manual/develop/ja/_static/language_data.js index b3681270..89083d9e 100644 --- a/manual/develop/ja/_static/language_data.js +++ b/manual/develop/ja/_static/language_data.js @@ -5,7 +5,7 @@ * This script contains the language-specific data used by searchtools.js, * namely the list of stopwords, stemmer, scorer and splitter. * - * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS. + * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS. * :license: BSD, see LICENSE for details. * */ @@ -13,7 +13,7 @@ var stopwords = []; -/* Non-minified version is copied as a separate JS file, is available */ +/* Non-minified version is copied as a separate JS file, if available */ /** * Dummy stemmer for languages without stemming rules. diff --git a/manual/develop/ja/_static/searchtools.js b/manual/develop/ja/_static/searchtools.js index 7918c3fa..92da3f8b 100644 --- a/manual/develop/ja/_static/searchtools.js +++ b/manual/develop/ja/_static/searchtools.js @@ -4,7 +4,7 @@ * * Sphinx JavaScript utilities for the full-text search. * - * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS. + * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS. * :license: BSD, see LICENSE for details. * */ @@ -99,7 +99,7 @@ const _displayItem = (item, searchTerms, highlightTerms) => { .then((data) => { if (data) listItem.appendChild( - Search.makeSearchSummary(data, searchTerms) + Search.makeSearchSummary(data, searchTerms, anchor) ); // highlight search terms in the summary if (SPHINX_HIGHLIGHT_ENABLED) // set in sphinx_highlight.js @@ -116,8 +116,8 @@ const _finishSearch = (resultCount) => { ); else Search.status.innerText = _( - `Search finished, found ${resultCount} page(s) matching the search query.` - ); + "Search finished, found ${resultCount} page(s) matching the search query." + ).replace('${resultCount}', resultCount); }; const _displayNextItem = ( results, @@ -137,6 +137,22 @@ const _displayNextItem = ( // search finished, update title and status message else _finishSearch(resultCount); }; +// Helper function used by query() to order search results. +// Each input is an array of [docname, title, anchor, descr, score, filename]. +// Order the results by score (in opposite order of appearance, since the +// `_displayNextItem` function uses pop() to retrieve items) and then alphabetically. +const _orderResultsByScoreThenName = (a, b) => { + const leftScore = a[4]; + const rightScore = b[4]; + if (leftScore === rightScore) { + // same score: sort alphabetically + const leftTitle = a[1].toLowerCase(); + const rightTitle = b[1].toLowerCase(); + if (leftTitle === rightTitle) return 0; + return leftTitle > rightTitle ? -1 : 1; // inverted is intentional + } + return leftScore > rightScore ? 1 : -1; +}; /** * Default splitQuery function. Can be overridden in ``sphinx.search`` with a @@ -160,13 +176,26 @@ const Search = { _queued_query: null, _pulse_status: -1, - htmlToText: (htmlString) => { + htmlToText: (htmlString, anchor) => { const htmlElement = new DOMParser().parseFromString(htmlString, 'text/html'); - htmlElement.querySelectorAll(".headerlink").forEach((el) => { el.remove() }); + for (const removalQuery of [".headerlinks", "script", "style"]) { + htmlElement.querySelectorAll(removalQuery).forEach((el) => { el.remove() }); + } + if (anchor) { + const anchorContent = htmlElement.querySelector(`[role="main"] ${anchor}`); + if (anchorContent) return anchorContent.textContent; + + console.warn( + `Anchored content block not found. Sphinx search tries to obtain it via DOM query '[role=main] ${anchor}'. Check your theme or template.` + ); + } + + // if anchor not specified or not found, fall back to main content const docContent = htmlElement.querySelector('[role="main"]'); - if (docContent !== undefined) return docContent.textContent; + if (docContent) return docContent.textContent; + console.warn( - "Content block not found. Sphinx search tries to obtain it via '[role=main]'. Could you check your theme or template." + "Content block not found. Sphinx search tries to obtain it via DOM query '[role=main]'. Check your theme or template." ); return ""; }, @@ -239,16 +268,7 @@ const Search = { else Search.deferQuery(query); }, - /** - * execute search (requires search index to be loaded) - */ - query: (query) => { - const filenames = Search._index.filenames; - const docNames = Search._index.docnames; - const titles = Search._index.titles; - const allTitles = Search._index.alltitles; - const indexEntries = Search._index.indexentries; - + _parseQuery: (query) => { // stem the search terms and add them to the correct list const stemmer = new Stemmer(); const searchTerms = new Set(); @@ -284,16 +304,32 @@ const Search = { // console.info("required: ", [...searchTerms]); // console.info("excluded: ", [...excludedTerms]); - // array of [docname, title, anchor, descr, score, filename] - let results = []; + return [query, searchTerms, excludedTerms, highlightTerms, objectTerms]; + }, + + /** + * execute search (requires search index to be loaded) + */ + _performSearch: (query, searchTerms, excludedTerms, highlightTerms, objectTerms) => { + const filenames = Search._index.filenames; + const docNames = Search._index.docnames; + const titles = Search._index.titles; + const allTitles = Search._index.alltitles; + const indexEntries = Search._index.indexentries; + + // Collect multiple result groups to be sorted separately and then ordered. + // Each is an array of [docname, title, anchor, descr, score, filename]. + const normalResults = []; + const nonMainIndexResults = []; + _removeChildren(document.getElementById("search-progress")); - const queryLower = query.toLowerCase(); + const queryLower = query.toLowerCase().trim(); for (const [title, foundTitles] of Object.entries(allTitles)) { - if (title.toLowerCase().includes(queryLower) && (queryLower.length >= title.length/2)) { + if (title.toLowerCase().trim().includes(queryLower) && (queryLower.length >= title.length/2)) { for (const [file, id] of foundTitles) { let score = Math.round(100 * queryLower.length / title.length) - results.push([ + normalResults.push([ docNames[file], titles[file] !== title ? `${titles[file]} > ${title}` : title, id !== null ? "#" + id : "", @@ -308,46 +344,47 @@ const Search = { // search for explicit entries in index directives for (const [entry, foundEntries] of Object.entries(indexEntries)) { if (entry.includes(queryLower) && (queryLower.length >= entry.length/2)) { - for (const [file, id] of foundEntries) { - let score = Math.round(100 * queryLower.length / entry.length) - results.push([ + for (const [file, id, isMain] of foundEntries) { + const score = Math.round(100 * queryLower.length / entry.length); + const result = [ docNames[file], titles[file], id ? "#" + id : "", null, score, filenames[file], - ]); + ]; + if (isMain) { + normalResults.push(result); + } else { + nonMainIndexResults.push(result); + } } } } // lookup as object objectTerms.forEach((term) => - results.push(...Search.performObjectSearch(term, objectTerms)) + normalResults.push(...Search.performObjectSearch(term, objectTerms)) ); // lookup as search terms in fulltext - results.push(...Search.performTermsSearch(searchTerms, excludedTerms)); + normalResults.push(...Search.performTermsSearch(searchTerms, excludedTerms)); // let the scorer override scores with a custom scoring function - if (Scorer.score) results.forEach((item) => (item[4] = Scorer.score(item))); - - // now sort the results by score (in opposite order of appearance, since the - // display function below uses pop() to retrieve items) and then - // alphabetically - results.sort((a, b) => { - const leftScore = a[4]; - const rightScore = b[4]; - if (leftScore === rightScore) { - // same score: sort alphabetically - const leftTitle = a[1].toLowerCase(); - const rightTitle = b[1].toLowerCase(); - if (leftTitle === rightTitle) return 0; - return leftTitle > rightTitle ? -1 : 1; // inverted is intentional - } - return leftScore > rightScore ? 1 : -1; - }); + if (Scorer.score) { + normalResults.forEach((item) => (item[4] = Scorer.score(item))); + nonMainIndexResults.forEach((item) => (item[4] = Scorer.score(item))); + } + + // Sort each group of results by score and then alphabetically by name. + normalResults.sort(_orderResultsByScoreThenName); + nonMainIndexResults.sort(_orderResultsByScoreThenName); + + // Combine the result groups in (reverse) order. + // Non-main index entries are typically arbitrary cross-references, + // so display them after other results. + let results = [...nonMainIndexResults, ...normalResults]; // remove duplicate search results // note the reversing of results, so that in the case of duplicates, the highest-scoring entry is kept @@ -361,7 +398,12 @@ const Search = { return acc; }, []); - results = results.reverse(); + return results.reverse(); + }, + + query: (query) => { + const [searchQuery, searchTerms, excludedTerms, highlightTerms, objectTerms] = Search._parseQuery(query); + const results = Search._performSearch(searchQuery, searchTerms, excludedTerms, highlightTerms, objectTerms); // for debugging //Search.lastresults = results.slice(); // a copy @@ -466,14 +508,18 @@ const Search = { // add support for partial matches if (word.length > 2) { const escapedWord = _escapeRegExp(word); - Object.keys(terms).forEach((term) => { - if (term.match(escapedWord) && !terms[word]) - arr.push({ files: terms[term], score: Scorer.partialTerm }); - }); - Object.keys(titleTerms).forEach((term) => { - if (term.match(escapedWord) && !titleTerms[word]) - arr.push({ files: titleTerms[word], score: Scorer.partialTitle }); - }); + if (!terms.hasOwnProperty(word)) { + Object.keys(terms).forEach((term) => { + if (term.match(escapedWord)) + arr.push({ files: terms[term], score: Scorer.partialTerm }); + }); + } + if (!titleTerms.hasOwnProperty(word)) { + Object.keys(titleTerms).forEach((term) => { + if (term.match(escapedWord)) + arr.push({ files: titleTerms[term], score: Scorer.partialTitle }); + }); + } } // no match but word was a required one @@ -496,9 +542,8 @@ const Search = { // create the mapping files.forEach((file) => { - if (fileMap.has(file) && fileMap.get(file).indexOf(word) === -1) - fileMap.get(file).push(word); - else fileMap.set(file, [word]); + if (!fileMap.has(file)) fileMap.set(file, [word]); + else if (fileMap.get(file).indexOf(word) === -1) fileMap.get(file).push(word); }); }); @@ -549,8 +594,8 @@ const Search = { * search summary for a given text. keywords is a list * of stemmed words. */ - makeSearchSummary: (htmlText, keywords) => { - const text = Search.htmlToText(htmlText); + makeSearchSummary: (htmlText, keywords, anchor) => { + const text = Search.htmlToText(htmlText, anchor); if (text === "") return null; const textLower = text.toLowerCase(); diff --git a/manual/develop/ja/acknowledgement.html b/manual/develop/ja/acknowledgement.html index e14a7dba..a872e8f4 100644 --- a/manual/develop/ja/acknowledgement.html +++ b/manual/develop/ja/acknowledgement.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/algorithm.html b/manual/develop/ja/algorithm.html index 59c8537d..ed532af1 100644 --- a/manual/develop/ja/algorithm.html +++ b/manual/develop/ja/algorithm.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/api/modules.html b/manual/develop/ja/api/modules.html index 599329b0..997d747a 100644 --- a/manual/develop/ja/api/modules.html +++ b/manual/develop/ja/api/modules.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/api/physbo.blm.basis.fourier.html b/manual/develop/ja/api/physbo.blm.basis.fourier.html index 6fc7804b..5adfb657 100644 --- a/manual/develop/ja/api/physbo.blm.basis.fourier.html +++ b/manual/develop/ja/api/physbo.blm.basis.fourier.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/api/physbo.blm.basis.html b/manual/develop/ja/api/physbo.blm.basis.html index e2443c57..b8296d56 100644 --- a/manual/develop/ja/api/physbo.blm.basis.html +++ b/manual/develop/ja/api/physbo.blm.basis.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/api/physbo.blm.core.html b/manual/develop/ja/api/physbo.blm.core.html index a0e2f69a..b1962b17 100644 --- a/manual/develop/ja/api/physbo.blm.core.html +++ b/manual/develop/ja/api/physbo.blm.core.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/api/physbo.blm.core.model.html b/manual/develop/ja/api/physbo.blm.core.model.html index 8e0fe355..681fcdd8 100644 --- a/manual/develop/ja/api/physbo.blm.core.model.html +++ b/manual/develop/ja/api/physbo.blm.core.model.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/api/physbo.blm.html b/manual/develop/ja/api/physbo.blm.html index 5f68a197..4dfeace4 100644 --- a/manual/develop/ja/api/physbo.blm.html +++ b/manual/develop/ja/api/physbo.blm.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/api/physbo.blm.inf.exact.html b/manual/develop/ja/api/physbo.blm.inf.exact.html index e54c131a..1c5575f9 100644 --- a/manual/develop/ja/api/physbo.blm.inf.exact.html +++ b/manual/develop/ja/api/physbo.blm.inf.exact.html @@ -16,7 +16,7 @@ - + @@ -113,7 +113,7 @@
パラメータ:
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パラメータ:
戻り値の型:
diff --git a/manual/develop/ja/api/physbo.gp.cov.gauss.html b/manual/develop/ja/api/physbo.gp.cov.gauss.html index 10007d28..25e039b8 100644 --- a/manual/develop/ja/api/physbo.gp.cov.gauss.html +++ b/manual/develop/ja/api/physbo.gp.cov.gauss.html @@ -16,7 +16,7 @@ - + @@ -119,8 +119,8 @@
パラメータ:
戻り値:
@@ -202,7 +202,7 @@
パラメータ:
戻り値:
diff --git a/manual/develop/ja/api/physbo.gp.cov.html b/manual/develop/ja/api/physbo.gp.cov.html index e14c81fc..5cb4c823 100644 --- a/manual/develop/ja/api/physbo.gp.cov.html +++ b/manual/develop/ja/api/physbo.gp.cov.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/api/physbo.gp.html b/manual/develop/ja/api/physbo.gp.html index ce0e9f80..4ba3a941 100644 --- a/manual/develop/ja/api/physbo.gp.html +++ b/manual/develop/ja/api/physbo.gp.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/api/physbo.gp.inf.exact.html b/manual/develop/ja/api/physbo.gp.inf.exact.html index ec41c3b1..c5a90a88 100644 --- a/manual/develop/ja/api/physbo.gp.inf.exact.html +++ b/manual/develop/ja/api/physbo.gp.inf.exact.html @@ -16,7 +16,7 @@ - + @@ -113,7 +113,7 @@
パラメータ:
    -

  • gp (physbo.gp.core.model) --

    • +

  • gp (physbo.gp.core.model)

  • X (numpy.ndarray) -- N x d dimensional matrix. Each row of X denotes the d-dimensional feature vector of search candidate.

  • t (numpy.ndarray) -- N dimensional array. The negative energy of each search candidate (value of the objective function to be optimized).

    • @@ -136,7 +136,7 @@
    パラメータ:
      -

    • gp (physbo.gp.core.model) --

      • +

    • gp (physbo.gp.core.model)

    • X (numpy.ndarray) -- N x d dimensional matrix. Each row of X denotes the d-dimensional feature vector of search candidate.

    • t (numpy.ndarray) -- N dimensional array. The negative energy of each search candidate (value of the objective function to be optimized).

      • @@ -159,7 +159,7 @@
      パラメータ:
        -

      • gp (physbo.gp.core.model) --

        • +

      • gp (physbo.gp.core.model)

      • X (numpy.ndarray) -- N x d dimensional matrix. Each row of X denotes the d-dimensional feature vector of search candidate.

      • Z (numpy.ndarray) -- N x d dimensional matrix. Each row of Z denotes the d-dimensional feature vector of tests.

      • params (numpy.ndarray) -- Parameters.

        • @@ -179,7 +179,7 @@
        パラメータ:
          -

        • gp (physbo.gp.core.model) --

          • +

        • gp (physbo.gp.core.model)

        • X (numpy.ndarray) -- N x d dimensional matrix. Each row of X denotes the d-dimensional feature vector of search candidate.

        • Z (numpy.ndarray) -- N x d dimensional matrix. Each row of Z denotes the d-dimensional feature vector of tests.

        • params (numpy.ndarray) -- Parameters.

          • @@ -197,7 +197,7 @@
          パラメータ:
            -

          • gp (physbo.gp.core.model) --

            • +

          • gp (physbo.gp.core.model)

          • X (numpy.ndarray) -- N x d dimensional matrix. Each row of X denotes the d-dimensional feature vector of search candidate.

          • t (numpy.ndarray) -- N dimensional array. The negative energy of each search candidate (value of the objective function to be optimized).

            • diff --git a/manual/develop/ja/api/physbo.gp.inf.html b/manual/develop/ja/api/physbo.gp.inf.html index b5aa15c8..6a5f2b52 100644 --- a/manual/develop/ja/api/physbo.gp.inf.html +++ b/manual/develop/ja/api/physbo.gp.inf.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/api/physbo.gp.lik.gauss.html b/manual/develop/ja/api/physbo.gp.lik.gauss.html index 3dd56215..eac9f27c 100644 --- a/manual/develop/ja/api/physbo.gp.lik.gauss.html +++ b/manual/develop/ja/api/physbo.gp.lik.gauss.html @@ -16,7 +16,7 @@ - + @@ -135,7 +135,7 @@
            パラメータ:
              -

            • num_data (int) --

              • +

            • num_data (int)

            • params (numpy.ndarray) -- Parameters for optimization. Array of real elements of size (n,), where ‘n’ is the number of independent variables.

            @@ -156,7 +156,7 @@
            パラメータ:
              -

            • num_data (int) --

              • +

            • num_data (int)

            • params (numpy.ndarray) -- Parameters for optimization. Array of real elements of size (n,), where ‘n’ is the number of independent variables.

            @@ -190,7 +190,7 @@

            Sampling by adding noise

            パラメータ:
            -

            fmean (numpy.ndarray) --

            +

            fmean (numpy.ndarray)

            diff --git a/manual/develop/ja/api/physbo.gp.lik.html b/manual/develop/ja/api/physbo.gp.lik.html index 2b3292f4..d32dc1f0 100644 --- a/manual/develop/ja/api/physbo.gp.lik.html +++ b/manual/develop/ja/api/physbo.gp.lik.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/api/physbo.gp.mean.const.html b/manual/develop/ja/api/physbo.gp.mean.const.html index 995471d1..e14bf4e4 100644 --- a/manual/develop/ja/api/physbo.gp.mean.const.html +++ b/manual/develop/ja/api/physbo.gp.mean.const.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/api/physbo.gp.mean.html b/manual/develop/ja/api/physbo.gp.mean.html index 9625d4c0..b02e03a6 100644 --- a/manual/develop/ja/api/physbo.gp.mean.html +++ b/manual/develop/ja/api/physbo.gp.mean.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/api/physbo.gp.mean.zero.html b/manual/develop/ja/api/physbo.gp.mean.zero.html index 669bcf2e..5d2133c4 100644 --- a/manual/develop/ja/api/physbo.gp.mean.zero.html +++ b/manual/develop/ja/api/physbo.gp.mean.zero.html @@ -16,7 +16,7 @@ - + @@ -150,7 +150,7 @@

            Not defined

            パラメータ:
            -

            params --

            +

            params

            diff --git a/manual/develop/ja/api/physbo.gp.predictor.html b/manual/develop/ja/api/physbo.gp.predictor.html index 15efc0ae..5d83d266 100644 --- a/manual/develop/ja/api/physbo.gp.predictor.html +++ b/manual/develop/ja/api/physbo.gp.predictor.html @@ -16,7 +16,7 @@ - + @@ -117,8 +117,8 @@
            パラメータ:
              -

            • args --

              • -

            • kwds --

              • +

            • args

              • +

            • kwds

            @@ -144,8 +144,8 @@
            パラメータ:
              -

            • args --

              • -

            • kwds --

              • +

            • args

              • +

            • kwds

            @@ -192,8 +192,8 @@
            パラメータ:
              -

            • args --

              • -

            • kwds --

              • +

            • args

              • +

            • kwds

            @@ -255,8 +255,8 @@
            パラメータ:
              -

            • args --

              • -

            • kwds --

              • +

            • args

              • +

            • kwds

            diff --git a/manual/develop/ja/api/physbo.html b/manual/develop/ja/api/physbo.html index 5f7a9b23..2c29dff9 100644 --- a/manual/develop/ja/api/physbo.html +++ b/manual/develop/ja/api/physbo.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/api/physbo.misc.centering.html b/manual/develop/ja/api/physbo.misc.centering.html index d3135171..0c1d4d36 100644 --- a/manual/develop/ja/api/physbo.misc.centering.html +++ b/manual/develop/ja/api/physbo.misc.centering.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/api/physbo.misc.gauss_elim.html b/manual/develop/ja/api/physbo.misc.gauss_elim.html index ad1b928f..3ed7fb68 100644 --- a/manual/develop/ja/api/physbo.misc.gauss_elim.html +++ b/manual/develop/ja/api/physbo.misc.gauss_elim.html @@ -16,7 +16,7 @@ - + @@ -112,9 +112,9 @@
            パラメータ:
              -

            • U ((M, M) array_like) --

              • -

            • matrix (A triangular) --

              • -

            • t ((M,) or (M, N) array_like) --

              • +

            • U ((M, M) array_like)

              • +

            • matrix (A triangular)

              • +

            • t ((M,) or (M, N) array_like)

            戻り値:
            diff --git a/manual/develop/ja/api/physbo.misc.html b/manual/develop/ja/api/physbo.misc.html index 7b96e59a..8f813ff8 100644 --- a/manual/develop/ja/api/physbo.misc.html +++ b/manual/develop/ja/api/physbo.misc.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/api/physbo.misc.set_config.html b/manual/develop/ja/api/physbo.misc.set_config.html index 7dd31d3d..6be1f634 100644 --- a/manual/develop/ja/api/physbo.misc.set_config.html +++ b/manual/develop/ja/api/physbo.misc.set_config.html @@ -16,7 +16,7 @@ - + @@ -114,7 +114,7 @@

            Loading information of configuration from config._sectoins['adam'].

            パラメータ:
            -

            config (physbo.misc.set_config object) --

            +

            config (physbo.misc.set_config object)

            @@ -137,7 +137,7 @@

            Loading information of configuration from config._sectoins['batch'].

            パラメータ:
            -

            config (physbo.misc.set_config object) --

            +

            config (physbo.misc.set_config object)

          @@ -156,7 +156,7 @@

          Return boolean.

          パラメータ:
          -

          str (str or boolean) --

          +

          str (str or boolean)

          戻り値の型:

          True or False

          @@ -174,7 +174,7 @@

          Loading information of configuration from config._sectoins['learning'].

          パラメータ:
          -

          config (physbo.misc.set_config object) --

          +

          config (physbo.misc.set_config object)

          @@ -197,7 +197,7 @@

          Loading information of configuration from config._sectoins['online'].

          パラメータ:
          -

          config (physbo.misc.set_config object) --

          +

          config (physbo.misc.set_config object)

        @@ -220,7 +220,7 @@

        Loading information of configuration from config._sectoins['search'].

        パラメータ:
        -

        config (physbo.misc.set_config object) --

        +

        config (physbo.misc.set_config object)

      @@ -244,8 +244,8 @@
      パラメータ:
        -

      • file_name (str) --

        • -

      • configuration. (An input file name of) --

        • +

      • file_name (str)

        • +

      • configuration. (An input file name of)

      diff --git a/manual/develop/ja/api/physbo.opt.adam.html b/manual/develop/ja/api/physbo.opt.adam.html index aa745340..9065589d 100644 --- a/manual/develop/ja/api/physbo.opt.adam.html +++ b/manual/develop/ja/api/physbo.opt.adam.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/api/physbo.opt.html b/manual/develop/ja/api/physbo.opt.html index 45f9508c..89189744 100644 --- a/manual/develop/ja/api/physbo.opt.html +++ b/manual/develop/ja/api/physbo.opt.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/api/physbo.predictor.html b/manual/develop/ja/api/physbo.predictor.html index 1cbe4a5b..dd96b491 100644 --- a/manual/develop/ja/api/physbo.predictor.html +++ b/manual/develop/ja/api/physbo.predictor.html @@ -16,7 +16,7 @@ - + @@ -112,8 +112,8 @@
      パラメータ:
        -

      • args --

        • -

      • kwds --

        • +

      • args

        • +

      • kwds

      @@ -127,8 +127,8 @@
      パラメータ:
        -

      • args --

        • -

      • kwds --

        • +

      • args

        • +

      • kwds

      @@ -142,8 +142,8 @@
      パラメータ:
        -

      • args --

        • -

      • kwds --

        • +

      • args

        • +

      • kwds

      @@ -157,8 +157,8 @@
      パラメータ:
        -

      • args --

        • -

      • kwds --

        • +

      • args

        • +

      • kwds

      @@ -172,8 +172,8 @@
      パラメータ:
        -

      • args --

        • -

      • kwds --

        • +

      • args

        • +

      • kwds

      @@ -187,8 +187,8 @@
      パラメータ:
        -

      • args --

        • -

      • kwds --

        • +

      • args

        • +

      • kwds

      @@ -202,8 +202,8 @@
      パラメータ:
        -

      • args --

        • -

      • kwds --

        • +

      • args

        • +

      • kwds

      @@ -217,8 +217,8 @@
      パラメータ:
        -

      • args --

        • -

      • kwds --

        • +

      • args

        • +

      • kwds

      @@ -232,8 +232,8 @@
      パラメータ:
        -

      • args --

        • -

      • kwds --

        • +

      • args

        • +

      • kwds

      @@ -259,8 +259,8 @@
      パラメータ:
        -

      • args --

        • -

      • kwds --

        • +

      • args

        • +

      • kwds

      @@ -286,8 +286,8 @@
      パラメータ:
        -

      • args --

        • -

      • kwds --

        • +

      • args

        • +

      • kwds

      diff --git a/manual/develop/ja/api/physbo.search.discrete.html b/manual/develop/ja/api/physbo.search.discrete.html index f7a050a7..fdb6ca07 100644 --- a/manual/develop/ja/api/physbo.search.discrete.html +++ b/manual/develop/ja/api/physbo.search.discrete.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/api/physbo.search.discrete.policy.html b/manual/develop/ja/api/physbo.search.discrete.policy.html index 67e8e170..6480e0bd 100644 --- a/manual/develop/ja/api/physbo.search.discrete.policy.html +++ b/manual/develop/ja/api/physbo.search.discrete.policy.html @@ -16,7 +16,7 @@ - + @@ -269,7 +269,7 @@
      パラメータ:

      • seed (int) -- seed number

        • -

      • ------- --

        • +

      • -------

    diff --git a/manual/develop/ja/api/physbo.search.discrete.results.html b/manual/develop/ja/api/physbo.search.discrete.results.html index 2e74bac3..25e5e5ef 100644 --- a/manual/develop/ja/api/physbo.search.discrete.results.html +++ b/manual/develop/ja/api/physbo.search.discrete.results.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/api/physbo.search.discrete_multi.html b/manual/develop/ja/api/physbo.search.discrete_multi.html index d4bd423a..d10a0a3d 100644 --- a/manual/develop/ja/api/physbo.search.discrete_multi.html +++ b/manual/develop/ja/api/physbo.search.discrete_multi.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/api/physbo.search.discrete_multi.policy.html b/manual/develop/ja/api/physbo.search.discrete_multi.policy.html index e63434f6..64ebf4aa 100644 --- a/manual/develop/ja/api/physbo.search.discrete_multi.policy.html +++ b/manual/develop/ja/api/physbo.search.discrete_multi.policy.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/api/physbo.search.discrete_multi.results.html b/manual/develop/ja/api/physbo.search.discrete_multi.results.html index 3a5ffa0f..5a1ca16c 100644 --- a/manual/develop/ja/api/physbo.search.discrete_multi.results.html +++ b/manual/develop/ja/api/physbo.search.discrete_multi.results.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/api/physbo.search.html b/manual/develop/ja/api/physbo.search.html index 3e46c0d6..10a162b0 100644 --- a/manual/develop/ja/api/physbo.search.html +++ b/manual/develop/ja/api/physbo.search.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/api/physbo.search.pareto.html b/manual/develop/ja/api/physbo.search.pareto.html index f7f99808..ed65debc 100644 --- a/manual/develop/ja/api/physbo.search.pareto.html +++ b/manual/develop/ja/api/physbo.search.pareto.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/api/physbo.search.score.html b/manual/develop/ja/api/physbo.search.score.html index 529a04a6..58d0fe35 100644 --- a/manual/develop/ja/api/physbo.search.score.html +++ b/manual/develop/ja/api/physbo.search.score.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/api/physbo.search.score_multi.html b/manual/develop/ja/api/physbo.search.score_multi.html index 98918d46..0c766ed0 100644 --- a/manual/develop/ja/api/physbo.search.score_multi.html +++ b/manual/develop/ja/api/physbo.search.score_multi.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/api/physbo.search.utility.html b/manual/develop/ja/api/physbo.search.utility.html index 39005f8b..76558c87 100644 --- a/manual/develop/ja/api/physbo.search.utility.html +++ b/manual/develop/ja/api/physbo.search.utility.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/api/physbo.variable.html b/manual/develop/ja/api/physbo.variable.html index c0abb5de..df6d7300 100644 --- a/manual/develop/ja/api/physbo.variable.html +++ b/manual/develop/ja/api/physbo.variable.html @@ -16,7 +16,7 @@ - + @@ -112,7 +112,7 @@

    • X (numpy array) -- N x d dimensional matrix. Each row of X denotes the d-dimensional feature vector of each search candidate.

    • t (numpy array) -- N dimensional array. The negative energy of each search candidate (value of the objective function to be optimized).

      • -

    • Z --

      • +

    • Z

@@ -135,7 +135,7 @@

Adding variable Z. If self.Z is None, self.Z is set as Z.

パラメータ:
-

Z --

+

Z

diff --git a/manual/develop/ja/contact.html b/manual/develop/ja/contact.html index 945f39d6..ab181b98 100644 --- a/manual/develop/ja/contact.html +++ b/manual/develop/ja/contact.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/genindex.html b/manual/develop/ja/genindex.html index b275dea9..7fe9884d 100644 --- a/manual/develop/ja/genindex.html +++ b/manual/develop/ja/genindex.html @@ -15,7 +15,7 @@ - + diff --git a/manual/develop/ja/index.html b/manual/develop/ja/index.html index a5c1fad3..37085f99 100644 --- a/manual/develop/ja/index.html +++ b/manual/develop/ja/index.html @@ -16,10 +16,12 @@ - + + + diff --git a/manual/develop/ja/install.html b/manual/develop/ja/install.html index 4d347664..b64fce8d 100644 --- a/manual/develop/ja/install.html +++ b/manual/develop/ja/install.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/introduction.html b/manual/develop/ja/introduction.html index aa1022f1..e19f77bd 100644 --- a/manual/develop/ja/introduction.html +++ b/manual/develop/ja/introduction.html @@ -16,7 +16,7 @@ - + diff --git a/manual/develop/ja/notebook/index.html b/manual/develop/ja/notebook/index.html index c3838cd4..c300d57a 100644 --- a/manual/develop/ja/notebook/index.html +++ b/manual/develop/ja/notebook/index.html @@ -16,10 +16,12 @@ - + + + diff --git a/manual/develop/ja/notebook/tutorial_Gaussian_process.html b/manual/develop/ja/notebook/tutorial_Gaussian_process.html index 10f582c5..bbad23db 100644 --- a/manual/develop/ja/notebook/tutorial_Gaussian_process.html +++ b/manual/develop/ja/notebook/tutorial_Gaussian_process.html @@ -17,7 +17,7 @@ - + diff --git a/manual/develop/ja/notebook/tutorial_basic.html b/manual/develop/ja/notebook/tutorial_basic.html index 02dda0e4..244171aa 100644 --- a/manual/develop/ja/notebook/tutorial_basic.html +++ b/manual/develop/ja/notebook/tutorial_basic.html @@ -17,7 +17,7 @@ - + diff --git a/manual/develop/ja/notebook/tutorial_interactive_mode.html b/manual/develop/ja/notebook/tutorial_interactive_mode.html index 8d2d335a..cfbbb27f 100644 --- a/manual/develop/ja/notebook/tutorial_interactive_mode.html +++ b/manual/develop/ja/notebook/tutorial_interactive_mode.html @@ -17,7 +17,7 @@ - + diff --git a/manual/develop/ja/notebook/tutorial_multi_objective.html b/manual/develop/ja/notebook/tutorial_multi_objective.html index 20840c0d..c6ac6089 100644 --- a/manual/develop/ja/notebook/tutorial_multi_objective.html +++ b/manual/develop/ja/notebook/tutorial_multi_objective.html @@ -17,7 +17,7 @@ - + diff --git a/manual/develop/ja/notebook/tutorial_multi_probe.html b/manual/develop/ja/notebook/tutorial_multi_probe.html index 6e4fc509..bd0238dc 100644 --- a/manual/develop/ja/notebook/tutorial_multi_probe.html +++ b/manual/develop/ja/notebook/tutorial_multi_probe.html @@ -17,7 +17,7 @@ - + diff --git a/manual/develop/ja/notebook/tutorial_once_mode.html b/manual/develop/ja/notebook/tutorial_once_mode.html index e063da89..78181cb5 100644 --- 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