From c75eb6fc8269add68a1bb935aaeda044b3733668 Mon Sep 17 00:00:00 2001 From: Baris Sencan Date: Wed, 3 Mar 2021 18:59:56 +0300 Subject: [PATCH] feat(lib): Support mapping a column to multiple columns (#189) * feat(lib): Support mapping a column to multiple columns Extremely useful for classification. * test(lib): Resolve flattening test flakiness * ci(config): Integrate with Mergeable * ci(config): Integrate with Dependabot * build(deps-dev): Fix security issues * docs(lib): Add flatten to advanced usage example --- .eslintrc.js | 1 + .github/dependabot.yml | 13 + .github/mergeable.yml | 36 + .github/workflows/check-pr.yml | 24 - README.md | 3 +- assets/csv/empty.csv | 0 assets/csv/headers.csv | 1 + commitlint.scopes.js | 2 +- dangerfile.ts | 40 - package-lock.json | 3442 +++++--------------------------- package.json | 1 - src/applyMappings.ts | 49 +- src/loadCsv.models.ts | 12 +- src/loadCsv.ts | 39 +- src/shuffle.ts | 4 +- tests/applyMappings.test.ts | 81 +- tests/loadCsv.test.ts | 18 + tsconfig.json | 4 +- 18 files changed, 672 insertions(+), 3098 deletions(-) create mode 100644 .github/dependabot.yml create mode 100644 .github/mergeable.yml delete mode 100644 .github/workflows/check-pr.yml create mode 100644 assets/csv/empty.csv create mode 100644 assets/csv/headers.csv delete mode 100644 dangerfile.ts diff --git a/.eslintrc.js b/.eslintrc.js index 431c85c..1ddd19d 100644 --- a/.eslintrc.js +++ b/.eslintrc.js @@ -35,6 +35,7 @@ module.exports = { 'newlines-between': 'always', }, ], + 'sonarjs/cognitive-complexity': ['error', 18], }, overrides: [ { diff --git a/.github/dependabot.yml b/.github/dependabot.yml new file mode 100644 index 0000000..a6f490c --- /dev/null +++ b/.github/dependabot.yml @@ -0,0 +1,13 @@ +version: 2 +updates: +# Fetch and update latest `npm` packages +- package-ecosystem: npm + directory: '/' + schedule: + interval: daily + time: '00:00' + open-pull-requests-limit: 10 + reviewers: + - isair + assignees: + - isair diff --git a/.github/mergeable.yml b/.github/mergeable.yml new file mode 100644 index 0000000..aeef8ba --- /dev/null +++ b/.github/mergeable.yml @@ -0,0 +1,36 @@ +version: 2 +mergeable: + - when: pull_request.* + validate: + - do: assignee + min: + count: 1 + - do: approvals + min: + count: 1 + block: + changes_requested: true + - do: title + must_include: + regex: '^[a-z]+\([a-z-]+\): [A-Z]{1}(.+)$' + - do: dependent + changed: + file: 'package.json' + required: ['package-lock.json'] + + - when: schedule.repository + validate: + - do: stale + days: 20 + type: pull_request, issues + pass: + - do: comment + payload: + body: This is old. Is it still relevant? + + - when: pull_request.*, pull_request_review.*, status.*, check_suite.* + name: 'Automatically merge pull requests once it passes all checks' + validate: [] + pass: + - do: merge + merge_method: 'squash' diff --git a/.github/workflows/check-pr.yml b/.github/workflows/check-pr.yml deleted file mode 100644 index 6f09232..0000000 --- a/.github/workflows/check-pr.yml +++ /dev/null @@ -1,24 +0,0 @@ -name: Check PR - -on: [pull_request] - -jobs: - danger: - runs-on: ubuntu-latest - - strategy: - matrix: - node-version: [14.15.5] - - steps: - - uses: actions/checkout@v2 - - name: Use Node.js ${{ matrix.node-version }} - uses: actions/setup-node@v1 - with: - node-version: ${{ matrix.node-version }} - - name: Install dependencies - run: npm install - - name: Run danger checks - env: - DANGER_GITHUB_API_TOKEN: ${{ secrets.PERSONAL_ACCESS_TOKEN }} - run: npx danger ci diff --git a/README.md b/README.md index 84ba4b9..296b38d 100644 --- a/README.md +++ b/README.md @@ -65,8 +65,9 @@ const { labelColumns: ['temperature'], mappings: { height: (ft) => ft * 0.3048, // feet to meters - temperature: (f) => (f - 32) / 1.8, // fahrenheit to celsius + temperature: (f) => (f < 50 ? [1, 0] : [0, 1]), // cold or hot classification }, // Map values based on which column they are in before they are loaded into tensors. + flatten: ['temperature'], // Flattens the array result of a mapping so that each member is a new column. shuffle: true, // Pass true to shuffle with a fixed seed, or a string to use it as a seed for the shuffling. splitTest: true, // Splits your data in half. You can also provide a certain row count for the test data, or a percentage string (e.g. 10%). prependOnes: true, // Prepends a column of 1s to your features and testFeatures tensors, useful for linear regression. diff --git a/assets/csv/empty.csv b/assets/csv/empty.csv new file mode 100644 index 0000000..e69de29 diff --git a/assets/csv/headers.csv b/assets/csv/headers.csv new file mode 100644 index 0000000..f8dd359 --- /dev/null +++ b/assets/csv/headers.csv @@ -0,0 +1 @@ +test,headers,should,fail diff --git a/commitlint.scopes.js b/commitlint.scopes.js index 749222a..aae78c1 100644 --- a/commitlint.scopes.js +++ b/commitlint.scopes.js @@ -4,7 +4,7 @@ module.exports = [ 'github', 'script', 'deps', - 'dev-deps', + 'deps-dev', 'asset', 'lib', 'release', diff --git a/dangerfile.ts b/dangerfile.ts deleted file mode 100644 index fa14cbb..0000000 --- a/dangerfile.ts +++ /dev/null @@ -1,40 +0,0 @@ -import { danger, fail, warn } from 'danger'; - -import scopes from './commitlint.scopes'; - -const titlePattern = /^(\w+)\(([a-z-]+)\): (.+)$/; - -const pr = danger.github.pr; -const isBotPr = pr.user.type === 'Bot'; - -/** - * Rules - */ - -if (!isBotPr) { - // Check PR title - if (!titlePattern.test(pr.title)) { - fail('The PR title needs to be in format: `type(scope): Description`.'); - } else { - const titleParts = pr.title.match(titlePattern); - - if (!titleParts || titleParts.length < 3) { - fail('Unexpected PR title parsing error'); - } else { - const scope = titleParts[2]; - - if (!scopes.includes(scope)) { - fail( - 'Scope in PR title must be one included in the wc.config.js file of the project.' - ); - } - } - } -} - -// Make sure someone is assigned to merge -if (pr.assignee === null) { - warn( - 'Please assign someone to merge this PR, and optionally include people who should review.' - ); -} diff --git a/package-lock.json b/package-lock.json index c856ce9..9158f2c 100644 --- a/package-lock.json +++ b/package-lock.json @@ -17,7 +17,6 @@ "@typescript-eslint/eslint-plugin": "^3.8.0", "@typescript-eslint/parser": "^3.7.1", "commitlint": "^11.0.0", - 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"ajv", "ansi-align", "ansi-regex", "ansi-styles", - "ansicolors", - "ansistyles", - "aproba", - "archy", "are-we-there-yet", "asap", "asn1", @@ -11073,39 +10520,26 @@ "aws4", "balanced-match", "bcrypt-pbkdf", - "bin-links", - "bluebird", "boxen", "brace-expansion", "buffer-from", "builtins", "byline", - "byte-size", - "cacache", - "call-limit", "camelcase", "capture-stack-trace", "caseless", "chalk", - "chownr", - "ci-info", "cidr-regex", "cli-boxes", - "cli-columns", - "cli-table3", "cliui", "clone", - "cmd-shim", - "co", "code-point-at", "color-convert", "color-name", "colors", - "columnify", "combined-stream", "concat-map", "concat-stream", - "config-chain", "configstore", "console-control-strings", "copy-concurrently", @@ -11116,7 +10550,6 @@ "cyclist", "dashdash", "debug", - "debuglog", "decamelize", "decode-uri-component", "deep-extend", @@ -11124,15 +10557,11 @@ "define-properties", "delayed-stream", "delegates", - "detect-indent", - "detect-newline", - "dezalgo", "dot-prop", "dotenv", "duplexer3", "duplexify", "ecc-jsbn", - "editor", "emoji-regex", "encoding", "end-of-stream", @@ -11147,56 +10576,38 @@ "execa", "extend", "extsprintf", - "fast-deep-equal", "fast-json-stable-stringify", - "figgy-pudding", - "find-npm-prefix", "flush-write-stream", "forever-agent", "form-data", "from2", "fs-minipass", - "fs-vacuum", - "fs-write-stream-atomic", "fs.realpath", "function-bind", "gauge", "genfun", - "gentle-fs", "get-caller-file", "get-stream", "getpass", - "glob", "global-dirs", "got", - "graceful-fs", "har-schema", "har-validator", "has", "has-flag", "has-symbols", - "has-unicode", - "hosted-git-info", "http-cache-semantics", "http-proxy-agent", "http-signature", "https-proxy-agent", "humanize-ms", "iconv-lite", - "iferr", "ignore-walk", "import-lazy", - "imurmurhash", - "infer-owner", - "inflight", - "inherits", - "ini", - "init-package-json", "ip", "ip-regex", "is-callable", "is-ci", - "is-cidr", "is-date-object", "is-fullwidth-code-point", "is-installed-globally", @@ -11213,96 +10624,48 @@ "isexe", "isstream", "jsbn", - "json-parse-better-errors", "json-schema", - "json-schema-traverse", "json-stringify-safe", "jsonparse", "jsprim", "latest-version", - "lazy-property", - "libcipm", - "libnpm", - "libnpmaccess", "libnpmconfig", - "libnpmhook", - "libnpmorg", "libnpmpublish", - "libnpmsearch", - "libnpmteam", - "libnpx", - "lock-verify", - "lockfile", - "lodash._baseindexof", - "lodash._baseuniq", - "lodash._bindcallback", - "lodash._cacheindexof", - "lodash._createcache", "lodash._createset", - "lodash._getnative", "lodash._root", - "lodash.clonedeep", - "lodash.restparam", - "lodash.union", - "lodash.uniq", - "lodash.without", "lowercase-keys", - "lru-cache", "make-dir", "make-fetch-happen", - "meant", "mime-db", "mime-types", "minimatch", + "minimist", "minizlib", - "mississippi", - "mkdirp", - "move-concurrently", "ms", "mute-stream", "node-fetch-npm", - "node-gyp", - "nopt", - "normalize-package-data", - "npm-audit-report", "npm-bundled", - "npm-cache-filename", - "npm-install-checks", - "npm-lifecycle", "npm-logical-tree", "npm-normalize-package-bin", - "npm-package-arg", - "npm-packlist", - "npm-pick-manifest", - "npm-profile", - "npm-registry-fetch", "npm-run-path", - "npm-user-validate", - "npmlog", "number-is-nan", "oauth-sign", "object-assign", "object-keys", "object.getownpropertydescriptors", - "once", - "opener", "os-homedir", "os-tmpdir", - "osenv", "p-finally", "package-json", - "pacote", "parallel-transform", "path-exists", "path-is-absolute", - "path-is-inside", "path-key", "path-parse", "performance-now", "pify", "prepend-http", "process-nextick-args", - "promise-inflight", "promise-retry", "promzard", "proto-list", @@ -11313,96 +10676,62 @@ "pump", "pumpify", "punycode", - "qrcode-terminal", "qs", - "query-string", - "qw", "rc", - "read", - "read-cmd-shim", - "read-installed", - "read-package-json", - "read-package-tree", - "readable-stream", - "readdir-scoped-modules", "registry-auth-token", "registry-url", - "request", "require-directory", "require-main-filename", "resolve-from", - "retry", - "rimraf", "run-queue", - "safe-buffer", "safer-buffer", - "semver", "semver-diff", "set-blocking", - "sha", "shebang-command", "shebang-regex", "signal-exit", - "slide", "smart-buffer", "socks", "socks-proxy-agent", - "sorted-object", - "sorted-union-stream", "spdx-correct", "spdx-exceptions", "spdx-expression-parse", "spdx-license-ids", "split-on-first", "sshpk", - "ssri", "stream-each", "stream-iterate", "stream-shift", "strict-uri-encode", - "string-width", "string_decoder", - "stringify-package", + "string-width", "strip-ansi", "strip-eof", "strip-json-comments", "supports-color", - "tar", "term-size", - "text-table", "through", "through2", "timed-out", - "tiny-relative-date", "tough-cookie", "tunnel-agent", "tweetnacl", "typedarray", - "uid-number", - "umask", - "unique-filename", "unique-slug", "unique-string", - "unpipe", "unzip-response", - "update-notifier", + "uri-js", "url-parse-lax", "util-deprecate", "util-extend", "util-promisify", - "uuid", - "validate-npm-package-license", - "validate-npm-package-name", "verror", "wcwidth", - "which", "which-module", "wide-align", "widest-line", - "worker-farm", "wrap-ansi", "wrappy", - "write-file-atomic", "xdg-basedir", "xtend", "y18n", @@ -11448,7 +10777,7 @@ "infer-owner": "^1.0.4", "inflight": "~1.0.6", "inherits": "^2.0.4", - "ini": "^1.3.5", + "ini": "^1.3.8", "init-package-json": "^1.10.3", "is-cidr": "^3.0.0", "json-parse-better-errors": "^1.0.2", @@ -11476,7 +10805,7 @@ "lodash.uniq": "~4.5.0", "lodash.without": "~4.4.0", "lru-cache": "^5.1.1", - "meant": "~1.0.1", + "meant": "^1.0.2", "mississippi": "^3.0.0", "mkdirp": "^0.5.5", "move-concurrently": "^1.0.1", @@ -11491,11 +10820,11 @@ "npm-packlist": "^1.4.8", "npm-pick-manifest": "^3.0.2", "npm-profile": "^4.0.4", - "npm-registry-fetch": "^4.0.5", - "npm-user-validate": "~1.0.0", + "npm-registry-fetch": "^4.0.7", + "npm-user-validate": "^1.0.1", "npmlog": "~4.1.2", "once": "~1.4.0", - "opener": "^1.5.1", + "opener": "^1.5.2", "osenv": "^0.1.5", "pacote": "^9.5.12", "path-is-inside": "~1.0.2", @@ -11697,14 +11026,12 @@ }, "node_modules/npm/node_modules/abbrev": { "version": "1.1.1", - "integrity": "sha512-nne9/IiQ/hzIhY6pdDnbBtz7DjPTKrY00P/zvPSm5pOFkl6xuGrGnXn/VtTNNfNtAfZ9/1RtehkszU9qcTii0Q==", "dev": true, "inBundle": true, "license": "ISC" }, "node_modules/npm/node_modules/agent-base": { "version": "4.3.0", - "integrity": "sha512-salcGninV0nPrwpGNn4VTXBb1SOuXQBiqbrNXoeizJsHrsL6ERFM2Ne3JUSBWRE6aeNJI2ROP/WEEIDUiDe3cg==", "dev": true, "inBundle": true, "license": "MIT", @@ -11717,7 +11044,6 @@ }, "node_modules/npm/node_modules/agentkeepalive": { "version": "3.5.2", - "integrity": "sha512-e0L/HNe6qkQ7H19kTlRRqUibEAwDK5AFk6y3PtMsuut2VAH6+Q4xZml1tNDJD7kSAyqmbG/K08K5WEJYtUrSlQ==", "dev": true, "inBundle": true, "license": "MIT", @@ -11728,22 +11054,8 @@ "node": ">= 4.0.0" } }, - "node_modules/npm/node_modules/ajv": { - "version": "5.5.2", - "integrity": "sha1-c7Xuyj+rZT49P5Qis0GtQiBdyWU=", - "dev": true, - "inBundle": true, - "license": "MIT", - "dependencies": { - "co": "^4.6.0", - "fast-deep-equal": "^1.0.0", - "fast-json-stable-stringify": "^2.0.0", - "json-schema-traverse": "^0.3.0" - } - }, "node_modules/npm/node_modules/ansi-align": { "version": "2.0.0", - "integrity": "sha1-w2rsy6VjuJzrVW82kPCx2eNUf38=", "dev": true, "inBundle": true, "license": "ISC", @@ -11753,7 +11065,6 @@ }, "node_modules/npm/node_modules/ansi-regex": { "version": "2.1.1", - "integrity": "sha1-w7M6te42DYbg5ijwRorn7yfWVN8=", "dev": true, "inBundle": true, "license": "MIT", @@ -11763,7 +11074,6 @@ }, "node_modules/npm/node_modules/ansi-styles": { "version": "3.2.1", - "integrity": "sha512-VT0ZI6kZRdTh8YyJw3SMbYm/u+NqfsAxEpWO0Pf9sq8/e94WxxOpPKx9FR1FlyCtOVDNOQ+8ntlqFxiRc+r5qA==", "dev": true, "inBundle": true, "license": "MIT", @@ -11776,35 +11086,30 @@ }, "node_modules/npm/node_modules/ansicolors": { "version": "0.3.2", - "integrity": "sha1-ZlWX3oap/+Oqm/vmyuXG6kJrSXk=", "dev": true, "inBundle": true, "license": "MIT" }, "node_modules/npm/node_modules/ansistyles": { "version": "0.1.3", - "integrity": "sha1-XeYEFb2gcbs3EnhUyGT0GyMlRTk=", "dev": true, "inBundle": true, "license": "MIT" }, "node_modules/npm/node_modules/aproba": { "version": "2.0.0", - "integrity": "sha512-lYe4Gx7QT+MKGbDsA+Z+he/Wtef0BiwDOlK/XkBrdfsh9J/jPPXbX0tE9x9cl27Tmu5gg3QUbUrQYa/y+KOHPQ==", "dev": true, "inBundle": true, "license": "ISC" }, "node_modules/npm/node_modules/archy": { "version": "1.0.0", - "integrity": "sha1-+cjBN1fMHde8N5rHeyxipcKGjEA=", "dev": true, "inBundle": true, "license": "MIT" }, "node_modules/npm/node_modules/are-we-there-yet": { "version": "1.1.4", - "integrity": "sha1-u13KOCu5TwXhUZQ3PRb9O6HKEQ0=", "dev": true, "inBundle": true, "license": "ISC", @@ -11815,7 +11120,6 @@ }, "node_modules/npm/node_modules/are-we-there-yet/node_modules/readable-stream": { "version": "2.3.6", - "integrity": "sha512-tQtKA9WIAhBF3+VLAseyMqZeBjW0AHJoxOtYqSUZNJxauErmLbVm2FW1y+J/YA9dUrAC39ITejlZWhVIwawkKw==", "dev": true, "inBundle": true, "license": "MIT", @@ -11831,7 +11135,6 @@ }, "node_modules/npm/node_modules/are-we-there-yet/node_modules/string_decoder": { "version": "1.1.1", - "integrity": "sha512-n/ShnvDi6FHbbVfviro+WojiFzv+s8MPMHBczVePfUpDJLwoLT0ht1l4YwBCbi8pJAveEEdnkHyPyTP/mzRfwg==", "dev": true, "inBundle": true, "license": "MIT", @@ -11841,14 +11144,12 @@ }, "node_modules/npm/node_modules/asap": { "version": "2.0.6", - 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"integrity": "sha1-jpQ9E1jcN1VQVOy+LtsFqhdO3hQ=", "bundled": true, "dev": true } @@ -31147,29 +29071,48 @@ }, "graceful-fs": { "version": "4.2.4", - "integrity": "sha512-WjKPNJF79dtJAVniUlGGWHYGz2jWxT6VhN/4m1NdkbZ2nOsEF+cI1Edgql5zCRhs/VsQYRvrXctxktVXZUkixw==", "bundled": true, "dev": true }, "har-schema": { "version": "2.0.0", - "integrity": "sha1-qUwiJOvKwEeCoNkDVSHyRzW37JI=", "bundled": true, "dev": true }, "har-validator": { - "version": "5.1.0", - "integrity": "sha512-+qnmNjI4OfH2ipQ9VQOw23bBd/ibtfbVdK2fYbY4acTDqKTW/YDp9McimZdDbG8iV9fZizUqQMD5xvriB146TA==", + "version": "5.1.5", "bundled": true, "dev": true, "requires": { - "ajv": "^5.3.0", + "ajv": "^6.12.3", "har-schema": "^2.0.0" + }, + "dependencies": { + "ajv": { + "version": "6.12.6", + "bundled": true, + "dev": true, + "requires": { + "fast-deep-equal": "^3.1.1", + "fast-json-stable-stringify": "^2.0.0", + "json-schema-traverse": "^0.4.1", + "uri-js": "^4.2.2" + } + }, + "fast-deep-equal": { + "version": "3.1.3", + "bundled": true, + "dev": true + }, + "json-schema-traverse": { + "version": "0.4.1", + "bundled": true, + "dev": true + } } }, "has": { "version": "1.0.3", - 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"integrity": "sha512-WUu7Rg1DroM7oQvGWfOiAK21n74Gg+T4elXEQYkOhtyLeWiJFoOGLXPKI/9gzIie9CtwVLm8wtw6YJdKyxSjeg==", - "dev": true, - "requires": { - "lodash.sortby": "^4.7.0", - "tr46": "^1.0.1", - "webidl-conversions": "^4.0.2" - } - }, "which": { "version": "1.3.1", "resolved": "https://registry.npmjs.org/which/-/which-1.3.1.tgz", diff --git a/package.json b/package.json index af8e1e3..c01101f 100644 --- a/package.json +++ b/package.json @@ -46,7 +46,6 @@ "@typescript-eslint/eslint-plugin": "^3.8.0", "@typescript-eslint/parser": "^3.7.1", "commitlint": "^11.0.0", - "danger": "^10.3.0", "eslint": "^6.0.0", "eslint-config-prettier": "^6.11.0", "eslint-plugin-import": "^2.22.0", diff --git a/src/applyMappings.ts b/src/applyMappings.ts index efd250d..ed18e8f 100644 --- a/src/applyMappings.ts +++ b/src/applyMappings.ts @@ -2,21 +2,44 @@ import { CsvTable, CsvReadOptions } from './loadCsv.models'; const applyMappings = ( table: CsvTable, - mappings: NonNullable + mappings: NonNullable, + columnsToFlatten: Set = new Set([]) ) => { - if (table.length < 2) { - return table; - } - const mappingsByIndex = table[0].map((columnName) => mappings[columnName]); - return table.map((row, index) => - index === 0 - ? row - : row.map((value, columnIndex) => - mappingsByIndex[columnIndex] - ? mappingsByIndex[columnIndex](value) - : value - ) + const columnNames = table[0]; + const columnArrayLengths = new Array(columnNames.length); + const mappingsByIndex = columnNames.map((columnName) => mappings[columnName]); + const shouldFlattenByIndex = columnNames.map((columnName) => + columnsToFlatten.has(columnName as string) ); + for (let i = 1; i < table.length; i++) { + table[i] = table[i].flatMap((value, columnIndex) => { + const mapping = mappingsByIndex[columnIndex]; + const shouldFlatten = shouldFlattenByIndex[columnIndex]; + if (!mapping) { + return value; + } + const mappedValue = mapping(value); + if (!shouldFlatten) { + return mappedValue; + } + if (!Array.isArray(mappedValue)) { + throw new Error( + `Column '${columnNames[columnIndex]}' is marked to be flattened but its mapping function did not return an array` + ); + } + if (columnArrayLengths[columnIndex] === undefined) { + columnArrayLengths[columnIndex] = mappedValue.length; + for (let j = 1; j < mappedValue.length; j++) { + table[0].splice(columnIndex, 0, columnNames[columnIndex]); + } + } else if (columnArrayLengths[columnIndex] !== mappedValue.length) { + throw new Error( + `Mapping function for column '${columnNames[columnIndex]}' needs to always return arrays of the same length` + ); + } + return mappedValue; + }); + } }; export default applyMappings; diff --git a/src/loadCsv.models.ts b/src/loadCsv.models.ts index d3aa9ae..e434c53 100644 --- a/src/loadCsv.models.ts +++ b/src/loadCsv.models.ts @@ -12,7 +12,9 @@ export interface CsvReadOptions { * that column will be put through the transformer function and be overwritten with the return value of it. */ mappings?: { - [columnName: string]: (value: string | number) => string | number; + [columnName: string]: ( + value: string | number + ) => string | number | string[] | number[]; }; /** * If true, shuffles all rows with a fixed seed, meaning that shuffling the same data will always result in the same shuffled data. @@ -35,7 +37,13 @@ export interface CsvReadOptions { /** * If true, calculates mean and variance for each feature column using data only in features, then standardises the values in features and testFeatures. Does not touch labels. */ - standardise?: boolean; + standardise?: boolean | string[]; + /** + * Useful for classification problems, if you have mapped a column's values to an array using `mappings`, you can choose to flatten it here so that each element becomes a new column. + * + * Throws an error if any of the values in the given column is not an array, or their sizes differ from each other. + */ + flatten?: string[]; } export type CsvTable = (string | number)[][]; diff --git a/src/loadCsv.ts b/src/loadCsv.ts index e5d2c8d..ef02703 100644 --- a/src/loadCsv.ts +++ b/src/loadCsv.ts @@ -10,18 +10,8 @@ import shuffle from './shuffle'; const defaultShuffleSeed = 'mncv9340ur'; -const loadCsv = (filename: string, options: CsvReadOptions) => { - const { - featureColumns, - labelColumns, - mappings = {}, - shuffle: shouldShuffle = false, - splitTest = false, - prependOnes = false, - standardise = false, - } = options; - - const data = fs +const parseCsv = (filename: string) => + fs .readFileSync(filename, { encoding: 'utf-8' }) .split('\n') .map((line) => line.split(',')) @@ -35,11 +25,30 @@ const loadCsv = (filename: string, options: CsvReadOptions) => { }) ); - const mappedData = applyMappings(data, mappings); +const loadCsv = ( + filename: string, + { + featureColumns, + labelColumns, + mappings = {}, + shuffle: shouldShuffle = false, + splitTest, + prependOnes = false, + standardise = false, + flatten = [], + }: CsvReadOptions +) => { + const data = parseCsv(filename); + + if (data.length < 2) { + throw new Error('CSV file can not be shorter than two rows'); + } + + applyMappings(data, mappings, new Set(flatten)); const tables: { [key: string]: CsvTable } = { - labels: filterColumns(mappedData, labelColumns), - features: filterColumns(mappedData, featureColumns), + labels: filterColumns(data, labelColumns), + features: filterColumns(data, featureColumns), testFeatures: [], testLabels: [], }; diff --git a/src/shuffle.ts b/src/shuffle.ts index 86d9f32..ebc0517 100644 --- a/src/shuffle.ts +++ b/src/shuffle.ts @@ -1,11 +1,11 @@ -const mulberry32 = (a: number) => () => { +export const mulberry32 = (a: number) => () => { let t = (a += 0x6d2b79f5); t = Math.imul(t ^ (t >>> 15), t | 1); t ^= t + Math.imul(t ^ (t >>> 7), t | 61); return ((t ^ (t >>> 14)) >>> 0) / 4294967296; }; -const cyrb53 = (str: string, seed = 0) => { +export const cyrb53 = (str: string, seed = 0) => { let h1 = 0xdeadbeef ^ seed, h2 = 0x41c6ce57 ^ seed; for (let i = 0, ch; i < str.length; i++) { diff --git a/tests/applyMappings.test.ts b/tests/applyMappings.test.ts index efa0671..681b624 100644 --- a/tests/applyMappings.test.ts +++ b/tests/applyMappings.test.ts @@ -1,22 +1,25 @@ /* eslint-disable @typescript-eslint/ban-ts-comment */ -import { CsvReadOptions } from '../src/loadCsv.models'; +import { CsvTable } from '../src/loadCsv.models'; import applyMappings from '../src/applyMappings'; +import { mulberry32 } from '../src/shuffle'; -const data = [ - ['lat', 'lng', 'height', 'temperature'], - [0.234, 1.47, 849.7, 64.4], - [-293.2, 103.34, 715.2, 73.4], -]; +let data: CsvTable = []; -const mappings: NonNullable = { - height: (ft) => Number(ft) * 0.3048, // feet to meters - temperature: (f) => (Number(f) - 32) / 1.8, // fahrenheit to celsius -}; +beforeEach(() => { + data = [ + ['lat', 'lng', 'height', 'temperature'], + [0.234, 1.47, 849.7, 64.4], + [-293.2, 103.34, 715.2, 73.4], + ]; +}); test('Applying mappings works correctly', () => { - const mappedData = applyMappings(data, mappings); + applyMappings(data, { + height: (ft) => Number(ft) * 0.3048, // feet to meters + temperature: (f) => (Number(f) - 32) / 1.8, // fahrenheit to celsius + }); // @ts-ignore - expect(mappedData).toBeDeepCloseTo( + expect(data).toBeDeepCloseTo( [ ['lat', 'lng', 'height', 'temperature'], [0.234, 1.47, 258.98856, 18], @@ -26,13 +29,53 @@ test('Applying mappings works correctly', () => { ); }); -test('Applying mappings does not break with a table with just headers', () => { - const tableOnlyHeaders = [['lat', 'lng', 'height', 'temperature']]; - const mappedData = applyMappings(tableOnlyHeaders, mappings); - expect(mappedData).toMatchObject(tableOnlyHeaders); +test('Flattening works correctly', () => { + applyMappings( + data, + { + height: (ft) => (Number(ft) < 800 ? [1, 0] : [0, 1]), // short, long classification + }, + new Set(['height']) + ); + // @ts-ignore + expect(data).toBeDeepCloseTo( + [ + ['lat', 'lng', 'height', 'height', 'temperature'], + [0.234, 1.47, 0, 1, 64.4], + [-293.2, 103.34, 1, 0, 73.4], + ], + 3 + ); }); -test('Applying mappings does not break with an empty table', () => { - const mappedData = applyMappings([], mappings); - expect(mappedData).toMatchObject([]); +test('Flattening throws an error when value is not an array', () => { + expect(() => + applyMappings( + data, + { + height: (ft) => Number(ft) * 2, + }, + new Set(['height']) + ) + ).toThrowError( + "Column 'height' is marked to be flattened but its mapping function did not return an array" + ); +}); + +test('Flattening throws an error when array lengths for the same column differ', () => { + expect(() => + applyMappings( + data, + { + height: (ft) => { + const arr = new Array(Math.floor(mulberry32(Number(ft))() * 10)); + arr[0] = ft; + return arr; + }, + }, + new Set(['height']) + ) + ).toThrowError( + "Mapping function for column 'height' needs to always return arrays of the same length" + ); }); diff --git a/tests/loadCsv.test.ts b/tests/loadCsv.test.ts index 46ef089..9bbcf7f 100644 --- a/tests/loadCsv.test.ts +++ b/tests/loadCsv.test.ts @@ -5,6 +5,24 @@ import loadCsv from '../src'; const filePath = './assets/csv/simple.csv'; +test('Loading an empty table should throw an error', () => { + expect(() => + loadCsv('./assets/csv/empty.csv', { + featureColumns: ['feature'], + labelColumns: ['label'], + }) + ).toThrowError('CSV file can not be shorter than two rows'); +}); + +test('Loading a table with just headers should throw an error', () => { + expect(() => + loadCsv('./assets/csv/headers.csv', { + featureColumns: ['feature'], + labelColumns: ['label'], + }) + ).toThrowError('CSV file can not be shorter than two rows'); +}); + test('Loading with only the required options should work', () => { const { features, labels } = loadCsv(filePath, { featureColumns: ['lat', 'lng'], diff --git a/tsconfig.json b/tsconfig.json index 81f6118..50513dc 100644 --- a/tsconfig.json +++ b/tsconfig.json @@ -1,9 +1,9 @@ { "compilerOptions": { - "target": "es2018", + "target": "es2019", "module": "es2015", "lib": [ - "es2018" + "es2019" ], "moduleResolution": "node", "skipLibCheck": true,