Bug fixed: fix the state freqs from the user-defined model parameters…

… for UNREST model
iqtree · May 27, 2024 · c8b8b45 · c8b8b45
1 parent 08ccc85
commit c8b8b45
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/model/modelunrest.cpp b/model/modelunrest.cpp
@@ -55,6 +55,10 @@ ModelUnrest::ModelUnrest(PhyloTree *tree, string model_params, StateFreqType fre
         outWarning("In the UNREST model, state frequencies should be embedded into the substitution rates. Thus, AliSim skips the user-specified state frequencies.");
 
     ModelMarkov::init(FREQ_ESTIMATE);
+
+    // change the state freq type to user defined if users specify the model parameters
+    if (model_params != "")
+        this->freq_type = FREQ_USER_DEFINED;
 }
 
 void ModelUnrest::writeInfo(ostream &out) {