-
Notifications
You must be signed in to change notification settings - Fork 2
index
Minh Bui edited this page Aug 2, 2019
·
9 revisions
Throughout the year, members of IQ-TREE development team teach workshops on molecular evolution, phylogenetics, phylogenomics, and maximum likelihood using IQ-TREE.
| Date | Course Title | Location | Instructor |
|---|---|---|---|
| Aug 1-11, 2019 | IQ-TREE Workshop Tutorial | Workshop on Molecular Evolution, Marine Biological Laboratory, Woods Hole, USA | Bui Quang Minh |
| Aug 4-9, 2019 | Several sessions | Workshop on Virus Evolution and Molecular Epidemiology, The University of Hong Kong, Hong Kong | Heiko Schmidt |
IQ-TREE was taught as part of the following workshops:
| Date | Course Title | Location | Instructor |
|---|---|---|---|
| Jan 24, 2019 | IQ-TREE intro and lab | Workshop on Phylogenomics, Cesky Krumlov, Czech Republic | Stephen Crotty |
| Dec 7, 2018 | Phylogenomics using IQ-TREE | Phylogenomics Workshop using IQ-TREE, Australian National University, Canberra, Australia | Rob Lanfear, Minh Bui |
| Aug 26, 2018 | ML Phylogenetics and IQ-TREE | Workshop on Virus Evolution and Molecular Epidemiology, Robert Koch-Institut, Berlin, Germany | Heiko Schmidt |
| Jul 24, 2018 | IQ-TREE intro and lab | Workshop on Molecular Evolution, Marine Biological Laboratory, Woods Hole, USA | Bui Quang Minh |
| Aug 27, 2017 | ML Phylogenetics and IQ-TREE | Workshop on Virus Evolution and Molecular Epidemiology, Universidade Nova de Lisboa, Lisboa, Portugal | Heiko Schmidt |
| Aug 14, 2016 | ML Phylogenetics and IQ-TREE | Workshop on Virus Evolution and Molecular Epidemiology, Korea University College of Medicine, Seoul, Republic of Korea | Heiko Schmidt |
Copyright (c) 2010-2016 IQ-TREE development team.
- First example
- Model selection
- New model selection
- Codon models
- Binary, Morphological, SNPs
- Ultrafast bootstrap
- Nonparametric bootstrap
- Single branch tests
- Partitioned analysis
- Partitioning with mixed data
- Partition scheme selection
- Bootstrapping partition model
- Utilizing multi-core CPUs
- Tree topology tests
- User-defined models
- Consensus construction and bootstrap value assignment
- Computing Robinson-Foulds distance
- Generating random trees
- DNA models
- Protein models
- Codon models
- Binary, morphological models
- Ascertainment bias correction
- Rate heterogeneity
- Counts files
- First running example
- Substitution models
- Virtual population size
- Sampling method
- Bootstrap branch support
- Interpretation of branch lengths