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sarah_curated_vcfallelicprimitives.vcf
1105 lines (1105 loc) · 58.8 KB
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sarah_curated_vcfallelicprimitives.vcf
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##fileformat=VCFv4.0
##fileDate=22/03/16
##INFO=<ID=TYPE,Number=A,Type=String,Description="The type of allele, either snp, mnp, ins, del, or complex.">
##INFO=<ID=LEN,Number=A,Type=Integer,Description="allele length">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT tb-f11
H37RV 1742 F11_1843 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1977 F11_2078 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 4013 F11_4114 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 5520 F11_5621 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 7222 F11_7323 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 7362 F11_7463 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 7585 F11_7686 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 9304 F11_9405 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 11879 F11_11980 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 14251 F11_14352 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 15225 F11_15326 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 21795 F11_21896 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 26959 F11_27060 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 33457 F11_33558 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 33551 F11_33652 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 34044 F11_34145 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 37031 F11_37132 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 41257 F11_41358 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 42967 F11_43068 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 47699 F11_47800 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 62046 F11_62153 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 63768 F11_63875 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 69022 F11_69129 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 70813 F11_70921 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 71333 F11_71441 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 74056 F11_74201 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 75937 F11_76082 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 80613 F11_80749 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 92196 F11_92332 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 102185 F11_102321 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 103833 F11_103969 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 103876 F11_104012 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 104273 F11_104409 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 104277 F11_104413 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 104280 F11_104416 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 104709 F11_104845 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 104764 F11_104900 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 104770 F11_104906 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 104772 F11_104908 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 104779 F11_104915 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 104782 F11_104918 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 104788 F11_104924 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 104791 F11_104927 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 104797 F11_104933 T A 0 PASS SVTYPE=SNP GT 1/1
H37RV 104798 F11_104934 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 104800 F11_104936 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 104803 F11_104939 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 104806 F11_104943 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 104807 F11_104944 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 104808 F11_104945 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 104809 F11_104946 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 104810 F11_104947 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 104814 F11_104951 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 104821 F11_104958 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 113835 F11_113972 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 122106 F11_122243 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 133837 F11_133975 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 133860 F11_133998 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 144802 F11_144940 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 146085 F11_146223 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 147653 F11_147791 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 154281 F11_154599 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 157290 F11_157608 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 162579 F11_162897 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 165663 F11_165981 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 168692 F11_169010 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 177855 F11_178173 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 180023 F11_180341 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 188798 F11_189116 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 194679 F11_194997 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 196640 F11_196958 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 203267 F11_203585 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 206337 F11_206655 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 207224 F11_207542 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 212351 F11_212669 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 223940 F11_224258 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 225321 F11_225639 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 227096 F11_227414 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 231112 F11_231430 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 243118 F11_243436 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 243535 F11_243853 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 244719 F11_245037 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 244911 F11_245229 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 261869 F11_262187 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 265154 F11_265472 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 265554 F11_265872 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 278681 F11_278999 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 283614 F11_283932 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 285772 F11_286090 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 285871 F11_286189 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 285876 F11_286194 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 287904 F11_288222 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 295917 F11_296234 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 302660 F11_302977 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 310973 F11_311290 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 311613 F11_311930 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 312916 F11_313233 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 316129 F11_316446 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 326039 F11_326356 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 332759 F11_333076 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 334641 F11_337800 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 337820 F11_340961 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 338533 F11_341674 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 340372 F11_343513 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 346275 F11_349416 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 356528 F11_359669 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 361596 F11_364737 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 371265 F11_374346 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 376774 F11_379854 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 384380 F11_387460 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 386432 F11_389512 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 392914 F11_395994 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 403980 F11_407060 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 404326 F11_407406 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 408723 F11_411803 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 414486 F11_417566 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 420008 F11_423088 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 429248 F11_432415 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 444352 F11_447519 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 453781 F11_456948 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 454296 F11_457463 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 457033 F11_460200 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 457453 F11_460620 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 466097 F11_469264 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 472708 F11_475875 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 475181 F11_478348 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 476049 F11_479216 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 489938 F11_493105 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 498560 F11_501727 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 502592 F11_505759 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 503357 F11_506524 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 513260 F11_516427 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 515128 F11_518295 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 515382 F11_518549 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 533784 F11_536950 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 534694 F11_537860 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 541204 F11_544370 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 544686 F11_547852 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 551528 F11_554694 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 563423 F11_566589 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 573265 F11_576431 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 584441 F11_587583 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 589539 F11_592681 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 590439 F11_593581 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 597819 F11_600961 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 598478 F11_601620 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 610123 F11_613264 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 630725 F11_633950 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 635636 F11_638861 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 637322 F11_640547 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 637925 F11_641150 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 646246 F11_649471 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 648005 F11_651230 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 664252 F11_667477 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 665296 F11_668521 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 669401 F11_672626 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 673241 F11_676466 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 685464 F11_688689 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 685611 F11_688836 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 686975 F11_690200 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 690468 F11_693693 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 698971 F11_702196 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 701339 F11_704564 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 705598 F11_708823 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 709229 F11_712454 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 712776 F11_716001 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 726706 F11_729931 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 752346 F11_756104 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 754189 F11_757947 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 761158 F11_764916 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 764998 F11_768756 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 773812 F11_777570 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 775642 F11_779400 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 781398 F11_785156 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 784584 F11_788342 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 792125 F11_795883 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 796512 F11_800270 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 814644 F11_818510 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 820486 F11_824352 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 839952 F11_843818 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 841767 F11_845633 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 842114 F11_845980 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 848655 F11_852521 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 852913 F11_856779 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 853472 F11_857338 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 857699 F11_861564 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 880565 F11_884432 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 882260 F11_886127 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 885545 F11_889412 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 893736 F11_896244 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 900224 F11_902732 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 903553 F11_906061 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 903916 F11_906424 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 906860 F11_909368 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 921816 F11_924324 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 927388 F11_929851 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 928528 F11_930991 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 942482 F11_946294 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 945217 F11_949029 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 947432 F11_951244 T A 0 PASS SVTYPE=SNP GT 1/1
H37RV 947433 F11_951245 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 949538 F11_953350 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 955527 F11_959339 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 958925 F11_962737 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 979707 F11_983529 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 980103 F11_983925 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 980363 F11_984185 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 986466 F11_990288 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 986566 F11_990388 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 993349 F11_997171 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1037016 F11_1040838 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1047169 F11_1050991 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1047687 F11_1051509 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1055676 F11_1059498 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1068155 F11_1071974 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1068436 F11_1072255 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1070480 F11_1074299 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1070706 F11_1074525 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1074562 F11_1078381 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1075283 F11_1079102 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1076313 F11_1080132 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1077316 F11_1081135 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1079931 F11_1083750 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1081685 F11_1085504 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1087197 F11_1091016 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1090176 F11_1093995 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1093326 F11_1097145 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1095665 F11_1099430 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1095691 F11_1099456 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1096209 F11_1099974 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1096239 F11_1100004 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1096243 F11_1100008 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1096303 F11_1100068 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1096402 F11_1100167 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1096512 F11_1100277 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1096514 F11_1100279 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1096637 F11_1100402 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1100238 F11_1104003 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1103253 F11_1107017 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1106426 F11_1110190 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1107438 F11_1111202 A T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1107921 F11_1111685 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1109979 F11_1113743 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1118030 F11_1121794 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1126893 F11_1130657 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1127652 F11_1131416 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1142270 F11_1146034 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1149555 F11_1153319 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1150589 F11_1154353 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1157772 F11_1161536 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1163138 F11_1166902 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1163408 F11_1167172 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1164813 F11_1168577 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1170409 F11_1174174 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1178121 F11_1181886 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1190098 F11_1193863 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1199552 F11_1203317 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1200423 F11_1204188 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1205274 F11_1209039 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1212081 F11_1215846 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1218742 F11_1222504 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1220685 F11_1224447 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1224372 F11_1228134 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1231354 F11_1235116 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1232501 F11_1236263 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1248983 F11_1252745 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1276688 F11_1280447 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1276689 F11_1280448 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1277735 F11_1281494 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1277736 F11_1281495 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1278588 F11_1282347 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1281123 F11_1284882 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1290331 F11_1294090 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1292107 F11_1295866 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1307603 F11_1311362 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1327896 F11_1331655 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1328693 F11_1332452 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1334266 F11_1338025 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1339405 F11_1343164 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1339438 F11_1343197 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1339441 F11_1343200 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1339442 F11_1343201 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1340663 F11_1344421 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1340673 F11_1344431 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1341630 F11_1345388 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1354443 F11_1358201 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1354771 F11_1358529 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1357120 F11_1360878 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1360215 F11_1363974 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1374071 F11_1377831 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1375730 F11_1379490 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1382634 F11_1386394 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1384134 F11_1387894 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1389744 F11_1393505 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1393632 F11_1397393 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1396928 F11_1400689 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1404175 F11_1407936 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1411216 F11_1414977 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1413154 F11_1416915 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1425716 F11_1429477 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1428512 F11_1432273 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1440156 F11_1443917 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1440475 F11_1444236 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1443710 F11_1447471 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1445480 F11_1449241 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1445787 F11_1449548 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1446929 F11_1450690 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1451548 F11_1455309 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1452077 F11_1455838 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1457150 F11_1460911 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1468214 F11_1471975 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1472343 F11_1476104 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1480030 F11_1483791 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1480951 F11_1487744 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1480954 F11_1487747 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1481191 F11_1487984 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1482633 F11_1489426 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1484714 F11_1491507 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1499280 F11_1506072 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1512037 F11_1517729 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1526825 F11_1532517 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1533247 F11_1538940 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1533589 F11_1539282 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1536257 F11_1541950 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1547131 F11_1551466 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1552553 F11_1556888 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1563723 F11_1568058 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1570572 F11_1574907 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1573666 F11_1578001 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1586255 F11_1590590 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1588905 F11_1593240 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1592021 F11_1596356 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1592459 F11_1596794 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1592460 F11_1596795 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1609846 F11_1614181 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1613041 F11_1617397 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1613966 F11_1618322 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1624797 F11_1629153 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1625025 F11_1629381 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1630154 F11_1634510 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1636857 F11_1641447 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1636862 F11_1641452 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1636866 F11_1641456 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1636867 F11_1641457 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1636868 F11_1641458 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1636874 F11_1641464 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1636877 F11_1641467 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1636880 F11_1641470 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1636884 F11_1641474 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1636886 F11_1641476 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1636887 F11_1641477 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1636924 F11_1641514 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1636986 F11_1641576 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1636987 F11_1641577 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1636989 F11_1641579 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637094 F11_1641684 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637095 F11_1641685 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637096 F11_1641686 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637105 F11_1641693 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637119 F11_1641702 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637130 F11_1641711 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637138 F11_1641719 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637139 F11_1641720 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637148 F11_1641729 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637149 F11_1641730 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637150 F11_1641731 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637152 F11_1641733 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637153 F11_1641734 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637156 F11_1641737 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637158 F11_1641739 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637160 F11_1641741 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637169 F11_1641748 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637178 F11_1641756 A T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637179 F11_1641757 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637180 F11_1641758 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637184 F11_1641762 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637198 F11_1641776 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637203 F11_1641781 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637210 F11_1641788 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637212 F11_1641790 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637213 F11_1641791 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637216 F11_1641794 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637220 F11_1641798 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1637234 F11_1641812 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1639600 F11_1644178 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1645808 F11_1650439 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1650078 F11_1654709 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1666020 F11_1670651 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1676296 F11_1680927 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1689355 F11_1693986 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1692147 F11_1696778 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1692211 F11_1696842 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1692801 F11_1697432 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1693567 F11_1698198 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1698917 F11_1703548 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1706125 F11_1710756 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1708805 F11_1713436 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1710076 F11_1714707 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1711633 F11_1716264 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1718767 F11_1723398 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1728843 F11_1733474 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1735000 F11_1739631 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1740777 F11_1745408 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1752567 F11_1757198 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1759258 F11_1763890 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1760298 F11_1764930 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1778436 F11_1783068 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1778563 F11_1783195 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1788577 F11_1783961 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1788620 F11_1784004 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1788634 F11_1784018 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1788637 F11_1784021 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1789453 F11_1784837 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1789523 F11_1784907 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1789571 F11_1784955 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1789572 F11_1784956 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1789657 F11_1785041 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1789661 F11_1785045 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1789678 F11_1785062 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1789682 F11_1785066 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1789685 F11_1785069 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1793776 F11_1789160 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1798362 F11_1793746 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1799813 F11_1795197 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1801713 F11_1797097 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1803272 F11_1798656 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1804416 F11_1799800 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1805293 F11_1800677 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1810764 F11_1806148 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1813262 F11_1808646 T A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1817983 F11_1813367 A T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1836293 F11_1831677 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1838160 F11_1833544 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1842287 F11_1837671 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1846470 F11_1841854 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1847926 F11_1843310 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1854307 F11_1849691 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1856784 F11_1852168 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1862073 F11_1857457 T A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1862342 F11_1857726 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1885080 F11_1880463 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1885779 F11_1881162 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1887417 F11_1882800 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1899358 F11_1894580 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1901500 F11_1896722 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1907303 F11_1902525 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1917979 F11_1913201 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1931186 F11_1926408 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1933995 F11_1929217 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1943046 F11_1938268 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1943599 F11_1938821 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1944114 F11_1939336 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 1944409 F11_1939631 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1947910 F11_1943131 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1950774 F11_1947353 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1960291 F11_1956984 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1965650 F11_1962343 A T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1967244 F11_1963937 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 1981063 F11_1977756 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 1990926 F11_1995551 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 1993815 F11_1999789 A T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2006039 F11_2012972 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2022875 F11_2031166 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2025920 F11_2034166 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2026015 F11_2034261 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2026032 F11_2034278 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2026036 F11_2034282 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2026037 F11_2034283 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2026039 F11_2034285 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2026040 F11_2034286 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2026117 F11_2034363 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2030352 F11_2038597 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2030362 F11_2038607 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2034669 F11_2042914 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2038920 F11_2047165 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2045317 F11_2053562 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2049072 F11_2057317 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2049104 F11_2057349 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2052042 F11_2060287 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2053418 F11_2061663 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2053689 F11_2061934 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2055278 F11_2063523 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2074572 F11_2082761 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2096193 F11_2104376 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2097997 F11_2106180 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2108148 F11_2116331 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2116910 F11_2125094 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2121070 F11_2129254 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2123176 F11_2131360 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2128877 F11_2137061 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2135877 F11_2144076 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2141825 F11_2150034 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2142437 F11_2150646 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2143335 F11_2151544 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2147029 F11_2155283 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2153417 F11_2161671 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2155175 F11_2163429 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2163419 F11_2171673 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2163422 F11_2171676 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2163424 F11_2171678 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2163426 F11_2171680 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2163428 F11_2171682 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2163451 F11_2171705 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2163500 F11_2171754 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2163501 F11_2171755 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2163503 F11_2171757 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2163511 F11_2171765 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2163517 F11_2171771 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2163520 F11_2171774 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2163524 F11_2171778 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2163527 F11_2171781 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2165293 F11_2173616 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2165561 F11_2173809 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2174223 F11_2182471 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2184378 F11_2192626 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2191258 F11_2199506 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2192357 F11_2200605 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2196722 F11_2204970 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2196838 F11_2205086 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2196841 F11_2205089 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2196844 F11_2205092 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2196847 F11_2205095 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2196848 F11_2205096 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2196849 F11_2205097 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2196854 F11_2205102 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2196862 F11_2205110 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2196865 F11_2205113 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2196866 F11_2205114 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2196886 F11_2205134 T A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2196889 F11_2205137 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2196971 F11_2205219 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2197072 F11_2205320 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2197237 F11_2205485 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2197244 F11_2205492 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2197246 F11_2205494 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2197255 F11_2205503 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2197267 F11_2205515 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2197270 F11_2205518 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2197271 F11_2205519 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2197273 F11_2205521 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2197277 F11_2205525 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2197279 F11_2205527 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2197285 F11_2205533 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2207532 F11_2215780 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2211834 F11_2220080 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2216256 F11_2224502 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2216451 F11_2224697 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2220520 F11_2228766 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2223301 F11_2231547 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2227662 F11_2235908 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2228975 F11_2237221 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2231140 F11_2239386 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2245540 F11_2253786 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2249411 F11_2257657 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2260347 F11_2268593 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2260533 F11_2268779 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2264790 F11_2274394 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2265067 F11_2274671 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2269788 F11_2284392 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2270110 F11_2284714 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2283038 F11_2297642 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2285259 F11_2299863 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2287129 F11_2301733 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2296050 F11_2310654 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2300245 F11_2314849 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2300554 F11_2315158 A T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2300560 F11_2315164 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2300563 F11_2315167 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2301790 F11_2316394 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2302041 F11_2316645 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2302109 F11_2316712 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2302113 F11_2316716 T A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2302115 F11_2316718 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2302120 F11_2316724 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2302121 F11_2316725 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2302122 F11_2316726 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2302123 F11_2316727 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2302126 F11_2316730 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2302130 F11_2316734 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2302131 F11_2316735 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2302132 F11_2316736 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2302133 F11_2316737 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2302140 F11_2316744 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2329541 F11_2344145 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2334015 F11_2348619 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2335502 F11_2351464 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2340629 F11_2356592 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2341644 F11_2357607 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2345045 F11_2361008 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2348454 F11_2364417 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2361612 F11_2377640 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2362049 F11_2378077 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2371795 F11_2385179 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2371796 F11_2385180 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2380690 F11_2394245 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2386397 F11_2399950 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2412168 F11_2425721 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2415664 F11_2429217 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2424933 F11_2438486 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2438098 F11_2450293 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2440934 F11_2453129 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2453391 F11_2465586 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2461823 F11_2473961 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2462879 F11_2475017 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2463102 F11_2475240 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2470635 F11_2482773 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2484263 F11_2496401 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2499734 F11_2511872 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2502081 F11_2514219 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2503633 F11_2515771 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2509148 F11_2521286 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2509730 F11_2521868 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2521350 F11_2533488 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2525011 F11_2537149 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2529690 F11_2541828 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2531752 F11_2543890 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2537612 F11_2549748 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2546369 F11_2558505 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2562014 F11_2572792 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2562281 F11_2573059 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2563415 F11_2574193 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2573766 F11_2584544 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2586137 F11_2596915 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2598410 F11_2609188 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2602194 F11_2612972 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2612642 F11_2623429 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2617480 F11_2628267 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2621068 F11_2631855 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2649865 F11_2663150 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2654381 F11_2667666 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2654653 F11_2667938 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2656235 F11_2669520 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2659721 F11_2673006 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2660329 F11_2673614 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2680668 F11_2693953 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2695104 F11_2709747 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2695388 F11_2710031 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2713805 F11_2728469 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2720905 F11_2735569 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2720962 F11_2735626 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2720964 F11_2735628 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2721023 F11_2735687 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2734084 F11_2748748 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2736444 F11_2751108 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2745899 F11_2760563 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2752708 F11_2767372 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2754610 F11_2769274 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2760162 F11_2774826 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2779146 F11_2793810 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2784623 F11_2799287 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2786962 F11_2800268 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2793370 F11_2806676 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2818847 F11_2832155 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2821352 F11_2834660 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2827994 F11_2841302 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2828029 F11_2841337 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2828832 F11_2842140 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2829271 F11_2842579 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2829789 F11_2843097 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2830535 F11_2843843 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2835586 F11_2848894 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2844699 F11_2858007 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2855269 F11_2868577 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2865770 F11_2879078 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2865892 F11_2879200 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2871058 F11_2884366 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2871921 F11_2885229 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2880712 F11_2894020 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2881465 F11_2894773 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2888211 F11_2901518 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2889643 F11_2902950 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2891277 F11_2904584 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2891738 F11_2905045 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2893248 F11_2906555 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2894218 F11_2907525 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2907639 F11_2920946 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2910471 F11_2923778 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2911303 F11_2924610 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2912304 F11_2925611 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2923401 F11_2936708 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2927949 F11_2941256 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2932328 F11_2945635 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2939383 F11_2952690 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2939667 F11_2952974 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2945177 F11_2958484 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2945848 F11_2959155 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2964034 F11_2977341 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 2968923 F11_2982230 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 2974943 F11_2986892 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2976551 F11_2988500 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 2983105 F11_2995054 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 2984750 F11_2996699 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3005195 F11_3017140 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3007850 F11_3019795 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3009702 F11_3021647 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3011844 F11_3023789 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3017475 F11_3029420 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3041881 F11_3053826 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3051078 F11_3063023 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3054091 F11_3066036 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3054331 F11_3066276 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3073878 F11_3085823 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3077049 F11_3088994 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3080805 F11_3092750 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3086798 F11_3098743 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3095616 F11_3107561 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3101129 F11_3113074 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3103692 F11_3115637 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3107869 F11_3119814 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3108065 F11_3120010 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3108684 F11_3120629 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3113882 F11_3125827 A T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3118010 F11_3129955 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3121889 F11_3133834 GGGTTTTGGGTCTGACGACTCGCGGCGAGCACGTCTCACCCAGCAGGCGGTGAGGTTGGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCA TCGACATCGACGCGATCGTCGACGAGTTTCCGTCCTCTCTCGGGGTTTTGGGTCTGACGACGTGATCTTCTCTCCTGGCGAGGTCAAGGAAATCGATGTGG 0 PASS SVTYPE=SNP GT 1/1
H37RV 3130692 F11_3142311 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3133546 F11_3145174 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3137068 F11_3148696 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3162815 F11_3174443 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3165084 F11_3176712 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3175712 F11_3187232 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3177894 F11_3189414 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3178455 F11_3189975 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3186870 F11_3198390 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3191037 F11_3202556 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3195567 F11_3207086 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3195985 F11_3207504 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3196444 F11_3207963 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3215250 F11_3226769 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3226191 F11_3237710 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3228153 F11_3239672 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3230796 F11_3242315 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3236240 F11_3247703 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3243640 F11_3255103 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3247326 F11_3258789 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3247861 F11_3259324 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3247863 F11_3259326 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3247866 F11_3259329 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3247875 F11_3259338 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3247876 F11_3259339 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3247877 F11_3259340 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3247878 F11_3259341 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3247879 F11_3259342 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3247884 F11_3259347 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3247887 F11_3259350 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3247893 F11_3259356 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3248084 F11_3259547 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3248085 F11_3259548 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3256504 F11_3267967 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3260311 F11_3271774 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3269591 F11_3281054 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3270794 F11_3282257 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3273210 F11_3284673 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3284736 F11_3296199 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3296853 F11_3308316 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3308616 F11_3320079 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3311566 F11_3323029 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3336597 F11_3348060 T A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3336656 F11_3348119 T A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3336835 F11_3348534 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3338613 F11_3350312 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3340625 F11_3352324 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3354906 F11_3366605 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3357170 F11_3368869 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3358245 F11_3369944 A T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3363348 F11_3375047 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3366915 F11_3378614 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3367775 F11_3379474 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3378414 F11_3390113 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3378429 F11_3390128 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3381652 F11_3393351 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3382759 F11_3394458 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3388177 F11_3399876 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3392473 F11_3404172 T A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3401962 F11_3413661 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3402827 F11_3414526 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3414802 F11_3426501 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3418325 F11_3430024 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3418327 F11_3430026 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3425851 F11_3437618 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3426792 F11_3438559 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3428914 F11_3440681 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3429199 F11_3440966 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3436293 F11_3448060 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3440461 F11_3452228 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3440465 F11_3452232 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3451667 F11_3463434 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3456663 F11_3468430 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3458488 F11_3470255 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3460983 F11_3472750 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3462132 F11_3473899 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3481472 F11_3494598 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3481990 F11_3495116 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3482429 F11_3495555 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3486974 F11_3500100 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3495655 F11_3508781 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3503892 F11_3517018 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3509503 F11_3522629 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3518164 F11_3531290 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3518552 F11_3531678 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3524900 F11_3538026 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3548638 F11_3561764 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3556272 F11_3568040 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3564787 F11_3576555 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3576962 F11_3588730 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3580631 F11_3592399 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3581410 F11_3593178 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3591060 F11_3602828 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3594121 F11_3605889 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3597229 F11_3609010 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3600714 F11_3612495 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3604818 F11_3616599 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3610438 F11_3622219 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3614979 F11_3626760 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3622438 F11_3634219 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3625062 F11_3636843 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3688941 F11_3700659 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3689520 F11_3701238 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3704767 F11_3716253 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3710553 F11_3722039 T A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3712081 F11_3724237 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3714382 F11_3726538 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3714928 F11_3727084 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3717376 F11_3729532 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3721977 F11_3734133 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3722763 F11_3734919 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3730498 F11_3742654 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3730582 F11_3742738 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3732795 F11_3744993 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3732827 F11_3745025 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3732829 F11_3745027 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3732831 F11_3745029 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3732835 F11_3745033 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3732837 F11_3745035 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3732838 F11_3745036 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3732844 F11_3745042 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3732845 F11_3745043 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3736102 F11_3748300 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3736138 F11_3748336 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3736195 F11_3748393 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3736799 F11_3748997 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3746580 F11_3758874 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3749697 F11_3761991 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3749828 F11_3762122 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3752378 F11_3764673 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3753287 F11_3765582 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3753335 F11_3765630 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3770939 F11_3783234 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3771734 F11_3784029 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3776877 F11_3789172 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3789020 F11_3801315 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3798275 F11_3809212 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3803058 F11_3813995 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3817297 F11_3828234 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3823339 F11_3834451 A T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3825740 F11_3836852 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3826864 F11_3837976 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3829950 F11_3841062 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3831738 F11_3842850 C G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3839051 F11_3850163 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3841842 F11_3852954 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3841919 F11_3853031 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3841939 F11_3853051 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3841957 F11_3853068 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3841988 F11_3853099 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3841996 F11_3853107 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842062 F11_3853173 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842469 F11_3853580 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842475 F11_3853586 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842489 F11_3853600 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842491 F11_3853602 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842492 F11_3853603 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842497 F11_3853608 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842501 F11_3853612 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842512 F11_3853623 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842513 F11_3853624 A T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842515 F11_3853626 T A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842518 F11_3853629 G T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842519 F11_3853630 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842521 F11_3853632 T A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842528 F11_3853639 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842530 F11_3853641 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842532 F11_3853643 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842534 F11_3853645 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842542 F11_3853653 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842551 F11_3853662 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842552 F11_3853663 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842553 F11_3853664 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842557 F11_3853668 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842558 F11_3853669 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842564 F11_3853675 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842572 F11_3853683 G C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842574 F11_3853685 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842605 F11_3853716 T A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842800 F11_3853911 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3842805 F11_3853916 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3845172 F11_3856281 T A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3850047 F11_3863578 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3859556 F11_3873088 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3860073 F11_3873605 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3865174 F11_3878706 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3873571 F11_3887103 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3877600 F11_3891132 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3883405 F11_3896937 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3884927 F11_3898459 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3884970 F11_3898502 C A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3885085 F11_3898617 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3886065 F11_3899597 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3892850 F11_3905024 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3894355 F11_3906529 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3894655 F11_3906829 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3894804 F11_3906978 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3898587 F11_3910761 A G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3934118 F11_3946349 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3934180 . C T 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3934181 . C G 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3934182 . G T 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3934183 . C T 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3934201 F11_3946432 T G 0 PASS SVTYPE=SNP GT 1/1
H37RV 3934204 F11_3946435 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3934275 F11_3946506 G A 0 PASS SVTYPE=SNP GT 1/1
H37RV 3934320 F11_3946551 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3934333 F11_3946564 C T 0 PASS SVTYPE=SNP GT 1/1
H37RV 3935514 F11_3948387 T C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3935591 . C GCCCCGGCG 0 PASS LEN=8;TYPE=complex GT 1|1
H37RV 3935592 . A ACCCT 0 PASS LEN=4;TYPE=ins GT 1|1
H37RV 3935594 . A ATCG 0 PASS LEN=3;TYPE=ins GT 1|1
H37RV 3935595 . A G 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3935599 . A AC 0 PASS LEN=1;TYPE=ins GT 1|1
H37RV 3935600 . A C 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3935604 . CA C 0 PASS LEN=1;TYPE=del GT 1|1
H37RV 3935608 . C CG 0 PASS LEN=1;TYPE=ins GT 1|1
H37RV 3935610 . T TGAC 0 PASS LEN=3;TYPE=ins GT 1|1
H37RV 3935614 . GA G 0 PASS LEN=1;TYPE=del GT 1|1
H37RV 3935618 . G C 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3935620 . G A 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3935626 . C CATCG 0 PASS LEN=4;TYPE=ins GT 1|1
H37RV 3935628 . C CGGGGA 0 PASS LEN=5;TYPE=ins GT 1|1
H37RV 3935918 . G A 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3935919 . A C 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3936206 . CA G 0 PASS LEN=1;TYPE=complex GT 1|1
H37RV 3936208 . G C 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3936209 . A C 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3936210 . A C 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3936213 . GAA G 0 PASS LEN=2;TYPE=del GT 1|1
H37RV 3936219 . CAG C 0 PASS LEN=2;TYPE=del GT 1|1
H37RV 3936222 . G C 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3936223 . C CT 0 PASS LEN=1;TYPE=ins GT 1|1
H37RV 3936224 . G GA 0 PASS LEN=1;TYPE=ins GT 1|1
H37RV 3936225 . T TC 0 PASS LEN=1;TYPE=ins GT 1|1
H37RV 3936228 . C CG 0 PASS LEN=1;TYPE=ins GT 1|1
H37RV 3936230 . A AC 0 PASS LEN=1;TYPE=ins GT 1|1
H37RV 3936231 . G C 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3936235 . G C 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3936241 . C T 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3936243 . C A 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3936258 . G GCA 0 PASS LEN=2;TYPE=ins GT 1|1
H37RV 3936259 . T TCGGCGGG 0 PASS LEN=7;TYPE=ins GT 1|1
H37RV 3936269 . C A 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3936270 . A ACGCCGG 0 PASS LEN=6;TYPE=ins GT 1|1
H37RV 3936271 . A ATTCGGCGCC 0 PASS LEN=9;TYPE=ins GT 1|1
H37RV 3936273 . G GTGTTCC 0 PASS LEN=6;TYPE=ins GT 1|1
H37RV 3936278 . A G 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3936279 . T A 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3936288 . C A 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3941747 F11_3955241 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3942093 F11_3955595 A C 0 PASS SVTYPE=SNP GT 1/1
H37RV 3944678 . A G 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3944679 . C A 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3944682 . GCGGCCT G 0 PASS LEN=6;TYPE=del GT 1|1
H37RV 3944695 . CCCCCGG C 0 PASS LEN=6;TYPE=del GT 1|1
H37RV 3944703 . T C 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3944707 . CGG C 0 PASS LEN=2;TYPE=del GT 1|1
H37RV 3944710 . AT A 0 PASS LEN=1;TYPE=del GT 1|1
H37RV 3944713 . C A 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3944716 . C T 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3944720 . G A 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3944722 . C T 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3944728 . C T 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3944730 . C A 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3944739 . G A 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3944740 . CGG C 0 PASS LEN=2;TYPE=del GT 1|1
H37RV 3944743 . CG C 0 PASS LEN=1;TYPE=del GT 1|1
H37RV 3944747 . G A 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3944748 . C A 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3944749 . G T 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3944750 . G T 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3944758 . TGGC T 0 PASS LEN=3;TYPE=del GT 1|1
H37RV 3944766 . A C 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3944772 . GCAA G 0 PASS LEN=3;TYPE=del GT 1|1
H37RV 3944779 . C T 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3944782 . C CG 0 PASS LEN=1;TYPE=ins GT 1|1
H37RV 3944784 . C CAA 0 PASS LEN=2;TYPE=ins GT 1|1
H37RV 3944785 . G C 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3944788 . A T 0 PASS LEN=1;TYPE=snp GT 1|1
H37RV 3944791 . C T 0 PASS LEN=1;TYPE=snp GT 1|1