Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Change path termination process for local assembly #60

Closed
mbhall88 opened this issue Oct 15, 2018 · 1 comment
Closed

Change path termination process for local assembly #60

mbhall88 opened this issue Oct 15, 2018 · 1 comment
Assignees

Comments

@mbhall88
Copy link
Member

Currently, as we build a path I test whether it ends in the end k-mer. But it would make more sense to test whether it ends in any of the end k-mers we have which exist in the graph.

To test which end k-mers exist we can use the hash/method we produce for #59 to mark all end k-mers that exist in the graph upfront (and their reverse).

@mbhall88 mbhall88 self-assigned this Oct 15, 2018
@mbhall88
Copy link
Member Author

Before we begin enumerating paths between two kmers we now check to ensure a path exists between the two. Therefore, this issue is no longer valid.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant