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Ignore all non-ACGT alleles from input VCF files #117

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martinghunt opened this issue Aug 8, 2022 · 1 comment
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Ignore all non-ACGT alleles from input VCF files #117

martinghunt opened this issue Aug 8, 2022 · 1 comment

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@martinghunt
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See #116 (comment)

From VCF spec 4.3:
"ALT field must be a symbolic allele, or a breakend replacement string, or match the regular expression ^([ACGTNacgtn]+|\*|\.)$."

We only want to consider ACGT alleles, and so discard any alleles that do not match this regex: ^[ACGTacgt]+$.
@martinghunt martinghunt mentioned this issue Aug 9, 2022
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@martinghunt
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fixed in commit 0d3909e

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