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i don't know error #115

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kdyoung100 opened this issue Jul 29, 2022 · 4 comments
Open

i don't know error #115

kdyoung100 opened this issue Jul 29, 2022 · 4 comments

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@kdyoung100
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kdyoung100 commented Jul 29, 2022

minos adjudicate --reads /data1/kdyoung/KNTA/Batch01_20211129/1_S1_L001_R1_001_filtered.fastq.gz --reads /data1/kdyoung/KNTA/Batch01_20211129/1_S1_L001_R2_001_filtered.fastq.gz /home/kdyoung/01.Variant/10.KNTA/Batch01/1/01.snp/04.minos_vcf/ /home/kdyoung/bacteria_sample/ref/06.Mycobacterium/H37Rv/Mycobacterium.fasta /home/kdyoung/01.Variant/10.KNTA/Batch01/1/01.snp/01.samtools/1_H37Rv.vcf /home/kdyoung/01.Variant/10.KNTA/Batch01/1/01.snp/02.delly/DELLY_1.vcf --force --sample_name sample_1

output file only log file why not final.vcf ?

@martinghunt
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What is in the log file?
Did you get any error messages in your terminal?

@kdyoung100
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in the log file commend and my terminal not messages !

image

@kdyoung100
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log.txt

@martinghunt
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Could you please update to the latest release 0.12.4 and then check if your install works on the new test data?
https://github.com/iqbal-lab-org/minos/wiki/Minos-test-data

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