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I don't know the exact RAM usage by our kmer hash, but for future reference, we could replace it with https://github.com/rob-p/BooM which is a minimal perfect hash map based on Rayan's BBhash - uses about 3bits per element apparently. So for human, if we want to store 13mers, we need to store 66 million kmers--->this would only take 25Mb
The text was updated successfully, but these errors were encountered:
I don't know the exact RAM usage by our kmer hash, but for future reference, we could replace it with https://github.com/rob-p/BooM which is a minimal perfect hash map based on Rayan's BBhash - uses about 3bits per element apparently. So for human, if we want to store 13mers, we need to store 66 million kmers--->this would only take 25Mb
The text was updated successfully, but these errors were encountered: