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Determine cutoffs for alignment quality #1

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pieterprovoost opened this issue Jan 12, 2023 · 0 comments

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pieterprovoost commented Jan 12, 2023

From https://bowtie-bio.sourceforge.net/bowtie2/manual.shtml:

AS:i: Alignment score. Can be negative. Can be greater than 0 in --local mode (but not in --end-to-end mode). Only present if SAM record is for an aligned read.

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