2.27.1

Release Notes 2.27

features

• Add full video wheel motion alignment code to ibllib.io.extractors.video_motion module
• Change FPGA camera extractor to attempt wheel alignment if audio alignment fails
• Flexible FpgaTrials class allows subclassing for changes in hardware and task
• Task QC thresholds depend on sound card
• Extractor classes now return dicts instead of tuple
• Support extraction of habituationChoiceWorld with FPGA
• New IBLGlobusPatcher class allows safe and complete deletion of datasets

bugfixes

• Fix numpy version dependent error in io.extractors.camera.attribute_times
• Fix for habituationChoiceWorld stim off times occuring outside of trial intervals
• Improvements to Timeline trials extractor, especially for valve open times
• trainingPhaseChoiceWorld added to Bpod protocol extractor map fixture
• Last trial of FPGA sessions now correctly extracted
• Correct dynamic pipeline extraction of passive choice world trials

2.27.1

• Correct handling of missing TTLs in FpgaTrialsHabituation

other

• Removed deprecated pyschofit module
• Deprecated oneibl.globus module in favour of one.remote.globus
• Deprecated qc.task_extractors in favour of behaviour pipeline tasks

2.25 iblrigv8 support and atlas documentation

2.25.0

Merge branch 'release/2.25.0'

Quiescence period extraction / ONE2.0

What's Changed

• ONEv2 by @k1o0 in #608
• add quiescence period extracted file by @oliche in #606

Full Changelog: 2.22.3...2.23.0

2.21.3

features

• show atlas names in swanson plot
• allow user to define mask regions in swanson plot

bugfixes

• register_session: handle lack of taskData in passive sessions

2.21.2

What's Changed

• HOTFIX: floferlab multiple file records by @k1o0 in #583

Full Changelog: 2.21.1...2.21.2

Release 2.21.0

Release Notes 2.21.0 2023-02-14

features

• support for multiple task protocols within a session
• extract protocol period from spacer signals
• function for changing subject, collection, number or date in a settings file
• function to retrieve task protocol number from experiment description
• dataset type validation supports null filename patterns
• oneibl.registration uses one.registration client as superclass
• experiment description files are created and registered in legacy pipelines
• QC sign-off keys are added to session JSON field
• class-based note template API for attaching session notes for QC sign-offs
• protocol and procedures now taken from experiment description file
• handle truncated first spacer in passive extraction
• fix the Perirhinal area layer color in Allen Atlas
• fix region volume computation
• vectorised swanson flatmap
• brainbox trial ITI loader
• vectorised atlas plots

Register datasets as a revision if protected on Alyx

Release 2.18

features

• brainbox.modeling removed
• brainbox.io.one.load_trials_df removed, use one.load_object(...).to_df() instead
• AWS DataHandler refactored (ibllib.oneibl.aws removed)
• raise error when saving an empty dataset during extraction
• removed deprecated dsp packages (ibllib.dsp, ibllib.ephys.neuropixel, ibllib.io.spikeglx)
• register datasets as a revision if protected on Alyx

bugfixes

• frameData and timestamps both optional datasets for camera QC
• for 3B probes don't glob the sync files as fails for NP2 case
• support iblutil 1.4 (iblutil.util.get_logger -> iblutil.util.setup_logger)

Wheel smoothing update

• Compute wheel velocity using a low-pass filter instead of a Gaussian window smoothing
• Save widefield output plots in png format
• Widefield Sync task uses sync_collection argument
• Improve boundary display for atlas slice plots

2.17.1

requirements for ONE-api and slidingRP

2.17.0

What's Changed

• Metrics by @oliche in #521
• Release/2.17.0 by @oliche in #522

Full Changelog: 2.16.1...2.17.0