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Mesoscope suite2P task #587

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19 of 21 tasks
k1o0 opened this issue Feb 27, 2023 · 1 comment
Open
19 of 21 tasks

Mesoscope suite2P task #587

k1o0 opened this issue Feb 27, 2023 · 1 comment

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@k1o0
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k1o0 commented Feb 27, 2023 •
edited by samupicard
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  • Run metadata script on one session
  • get_signatures function for all mesoscope tasks
  • Check for consistency across multiple metadata files
  • Remove timestamps from FOV in metadata
  • Implement extraction of ops parameters from that metadata
  • Sparse matrices for masks
  • consolidate expQC and combine across imaging bouts
  • Install suite2p in env on whiterussian
  • Check if outputs register fine
  • Intermediate fast_disk
  • Add new dataset types to Alyx
  • Write function for signature depending on imaging folders
  • Update task to use meta data file
  • Determine which parameters are 'hardcoded'
  • Allow overriding of task parameters
  • Determine how duel plane recordings are represented on disk as separate FOVs
  • Determine how to represent duel plane in Alyx (allow users to determine which FOVs are duel plane)
  • Determine how represent different channels on disk
  • Fix badframes issue (see BUG: Input array broadcast error when th_badframes = 0  MouseLand/suite2p#930)
  • Add support for multi depth FOV sessions #771
  • Fix mpci.mpciFrameQC (zero dimension if no exptQC present)
@juhuntenburg
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This task is being killed, check what might cause / how to fix this
https://alyx.internationalbrainlab.org/admin/jobs/task/c28c692e-72d1-4ce5-a69a-ada48299be30/change/?_changelist_filters=q%3D3c13f19c-5f62-4107-9d55-72f64cf96f89

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@juhuntenburg @k1o0