From 69caa66ffa7697d7264f486f647eadf3a10c21c7 Mon Sep 17 00:00:00 2001 From: GitHub Action Date: Wed, 1 Nov 2023 12:26:41 +0000 Subject: [PATCH] Update documentation --- _autosummary/one.api.html | 11 ++++ _modules/one/api.html | 80 +++++++++++++++++------- _modules/one/converters.html | 3 + _modules/one/tests/test_converters.html | 14 ++++- _modules/one/tests/test_one.html | 39 +++++++++++- genindex.html | 6 +- objects.inv | Bin 19242 -> 19266 bytes searchindex.js | 2 +- 8 files changed, 126 insertions(+), 29 deletions(-) diff --git a/_autosummary/one.api.html b/_autosummary/one.api.html index dd3991b2..07dc8ff5 100644 --- a/_autosummary/one.api.html +++ b/_autosummary/one.api.html @@ -187,6 +187,17 @@ class One(cache_dir=None, mode='auto', wildcards=True, tables_dir=None)[source]

Bases: ConversionMixin

An API for searching and loading data on a local filesystem

+
+
+uuid_filenames = None
+

whether datasets on disk have a UUID in their filename

+
+
Type:
+

bool

+
+
+
+
property offline
diff --git a/_modules/one/api.html b/_modules/one/api.html index 14d523c1..2dc9224a 100644 --- a/_modules/one/api.html +++ b/_modules/one/api.html @@ -152,6 +152,9 @@

Source code for one.api

         'dataset', 'date_range', 'laboratory', 'number', 'projects', 'subject', 'task_protocol'
     )
 
+    uuid_filenames = None
+    """bool: whether datasets on disk have a UUID in their filename"""
+
     def __init__(self, cache_dir=None, mode='auto', wildcards=True, tables_dir=None):
         """An API for searching and loading data on a local filesystem
 
@@ -180,6 +183,8 @@ 
Source code for one.api
         self.mode = mode
         self.wildcards = wildcards  # Flag indicating whether to use regex or wildcards
         self.record_loaded = False
+        # assign property here as different instances may work on separate filesystems
+        self.uuid_filenames = False
         # init the cache file
         self._reset_cache()
         self.load_cache()
@@ -294,7 +299,7 @@ 
Source code for one.api
         force : bool
             If True, the cache is saved regardless of modification time.
         """
-        TIMEOUT = 30  # Delete lock file this many seconds after creation/modification or waiting
+        TIMEOUT = 5  # Delete lock file this many seconds after creation/modification or waiting
         lock_file = Path(self.cache_dir).joinpath('.cache.lock')
         save_dir = Path(save_dir or self.cache_dir)
         meta = self._cache['_meta']
@@ -695,6 +700,8 @@ 
Source code for one.api
         # First go through datasets and check if file exists and hash matches
         for i, rec in datasets.iterrows():
             file = Path(self.cache_dir, *rec[['session_path', 'rel_path']])
+            if self.uuid_filenames:
+                file = alfiles.add_uuid_string(file, i[1] if isinstance(i, tuple) else i)
             if file.exists():
                 # Check if there's a hash mismatch
                 # If so, add this index to list of datasets that need downloading
@@ -2333,23 +2340,29 @@ 
Source code for one.api
 
     def _download_datasets(self, dsets, **kwargs) -> List[Path]:
         """
-         Download a single or multitude of datasets if stored on AWS, otherwise calls
-         OneAlyx._download_dataset.
+        Download a single or multitude of datasets if stored on AWS, otherwise calls
+        OneAlyx._download_dataset.
 
-         NB: This will not skip files that are already present.  Use check_filesystem instead.
+        NB: This will not skip files that are already present.  Use check_filesystem instead.
 
-         Parameters
-         ----------
-         dset : dict, str, pd.Series
-             A single or multitude of dataset dictionaries.
+        Parameters
+        ----------
+        dset : dict, str, pandas.Series, pandas.DataFrame
+            A single or multitude of dataset dictionaries. For AWS downloads the input must be a
+            data frame.
+
+        Returns
+        -------
+        list of pathlib.Path
+            A list of local file paths.
+        """
+        # determine whether to remove the UUID after download, this may be overridden by user
+        kwargs['keep_uuid'] = kwargs.get('keep_uuid', self.uuid_filenames)
 
-         Returns
-         -------
-         pathlib.Path
-             A local file path or list of paths.
-         """
         # If all datasets exist on AWS, download from there.
         try:
+            if not isinstance(dsets, pd.DataFrame):
+                raise TypeError('Input datasets must be a pandas data frame for AWS download.')
             if 'exists_aws' in dsets and np.all(np.equal(dsets['exists_aws'].values, True)):
                 _logger.info('Downloading from AWS')
                 return self._download_aws(map(lambda x: x[1], dsets.iterrows()), **kwargs)
@@ -2357,7 +2370,31 @@ 
Source code for one.api
             _logger.debug(ex)
         return self._download_dataset(dsets, **kwargs)
 
-    def _download_aws(self, dsets, update_exists=True, **_) -> List[Path]:
+    def _download_aws(self, dsets, update_exists=True, keep_uuid=None, **_) -> List[Path]:
+        """
+        Download datasets from an AWS S3 instance using boto3.
+
+        Parameters
+        ----------
+        dsets : list of pandas.Series
+            An iterable for datasets as a pandas Series.
+        update_exists : bool
+            If true, the 'exists_aws' field of the cache table is set to False for any missing
+            datasets.
+        keep_uuid : bool
+            If false, the dataset UUID is removed from the downloaded filename. If None, the
+            `uuid_filenames` attribute determined whether the UUID is kept (default is false).
+
+        Returns
+        -------
+        list of pathlib.Path
+            A list the length of `dsets` of downloaded dataset file paths. Missing datasets are
+            returned as None.
+
+        See Also
+        --------
+        one.remote.aws.s3_download_file - The AWS download function.
+        """
         # Download datasets from AWS
         import one.remote.aws as aws
         s3, bucket_name = aws.get_s3_from_alyx(self.alyx)
@@ -2386,8 +2423,9 @@ 
Source code for one.api
                 continue
             source_path = PurePosixPath(record['data_repository_path'], record['relative_path'])
             source_path = alfiles.add_uuid_string(source_path, uuid)
-            local_path = alfiles.remove_uuid_string(
-                self.cache_dir.joinpath(dset['session_path'], dset['rel_path']))
+            local_path = self.cache_dir.joinpath(dset['session_path'], dset['rel_path'])
+            if keep_uuid is True or (keep_uuid is None and self.uuid_filenames is True):
+                local_path = alfiles.add_uuid_string(local_path, uuid)
             local_path.parent.mkdir(exist_ok=True, parents=True)
             out_files.append(aws.s3_download_file(
                 source_path, local_path, s3=s3, bucket_name=bucket_name, overwrite=update_exists))
@@ -2470,7 +2508,7 @@ 
Source code for one.api
 
         Returns
         -------
-        pathlib.Path, list
+        list of pathlib.Path
             A local file path or list of paths.
         """
         cache_dir = cache_dir or self.cache_dir
@@ -2512,7 +2550,7 @@ 
Source code for one.api
                     f'Failed to tag remote file record mismatch: {ex}\n'
                     'Please contact the database administrator.')
 
-    def _download_file(self, url, target_dir, keep_uuid=False, file_size=None, hash=None):
+    def _download_file(self, url, target_dir, keep_uuid=None, file_size=None, hash=None):
         """
         Downloads a single file or multitude of files from an HTTP webserver.
         The webserver in question is set by the AlyxClient object.
@@ -2524,7 +2562,7 @@ 
Source code for one.api
         target_dir : str, list
             Absolute path of directory to download file to (including alf path).
         keep_uuid : bool
-            If true, the UUID is not removed from the file name (default is False).
+            If true, the UUID is not removed from the file name.  See `uuid_filenames' property.
         file_size : int, list
             The expected file size or list of file sizes to compare with downloaded file.
         hash : str, list
@@ -2532,7 +2570,7 @@ 
Source code for one.api
 
         Returns
         -------
-        pathlib.Path
+        pathlib.Path or list of pathlib.Path
             The file path of the downloaded file or files.
 
         Example
@@ -2555,7 +2593,7 @@ 
Source code for one.api
             self._check_hash_and_file_size_mismatch(*args)
 
         # check if we are keeping the uuid on the list of file names
-        if keep_uuid:
+        if keep_uuid is True or (keep_uuid is None and self.uuid_filenames):
             return local_path
 
         # remove uuids from list of file names
diff --git a/_modules/one/converters.html b/_modules/one/converters.html
index 59ead93d..6cb0bba9 100644
--- a/_modules/one/converters.html
+++ b/_modules/one/converters.html
@@ -474,6 +474,9 @@ 
Source code for one.converters
         assert isinstance(dataset, pd.Series) or len(dataset) == 1
         session_path, rel_path = dataset[['session_path', 'rel_path']].to_numpy().flatten()
         file = Path(self.cache_dir, session_path, rel_path)
+        if self.uuid_filenames:
+            i = dataset.name if isinstance(dataset, pd.Series) else dataset.index[0]
+            file = add_uuid_string(file, i[1] if isinstance(i, tuple) else i)
         return file  # files[0] if len(datasets) == 1 else files

 
 
diff --git a/_modules/one/tests/test_converters.html b/_modules/one/tests/test_converters.html
index 39c55d6a..d0b9dce8 100644
--- a/_modules/one/tests/test_converters.html
+++ b/_modules/one/tests/test_converters.html
@@ -419,13 +419,23 @@ 
Source code for one.tests.test_converters
         alf_path = ('hoferlab/Subjects/SWC_043/2020-09-21/001/'
                     'alf/probe00/_phy_spikes_subset.channels.npy')
         expected = Path(self.one.alyx.cache_dir).joinpath(*alf_path.split('/'))
-        path = self.one.record2path(rec.loc[(self.eid, '00c234a3-a4ff-4f97-a522-939d15528a45')])
+        data_id = '00c234a3-a4ff-4f97-a522-939d15528a45'
+        path = self.one.record2path(rec.loc[(self.eid, data_id)])
         self.assertIsInstance(path, Path)
         self.assertEqual(expected, path)
         # As pd.DataFrame
         idx = rec.rel_path == 'alf/probe00/_phy_spikes_subset.channels.npy'
         path = self.one.record2path(rec[idx])
-        self.assertEqual(expected, path)

+        self.assertEqual(expected, path)
+        # With UUID in file name
+        try:
+            self.one.uuid_filenames = True
+            expected = expected.with_suffix(f'.{data_id}.npy')
+            self.assertEqual(expected, self.one.record2path(rec[idx]))  # as pd.DataFrame
+            self.assertEqual(expected, self.one.record2path(rec[idx].squeeze()))  # as pd.Series
+            self.assertEqual(expected, self.one.record2path(rec[idx].droplevel(0)))  # no eid
+        finally:
+            self.one.uuid_filenames = False

 
 
 

diff --git a/_modules/one/tests/test_one.html b/_modules/one/tests/test_one.html
index 5a9da254..d19fa2c5 100644
--- a/_modules/one/tests/test_one.html
+++ b/_modules/one/tests/test_one.html
@@ -589,7 +589,17 @@ 
Source code for one.tests.test_one
         self.assertCountEqual(expected, map(lambda x: f'{x[0]}/{x[1]}/{x[2]:03}', session_parts))
         # Attempt the same with the eid index missing
         datasets = datasets.droplevel(0).drop('session_path', axis=1)
-        self.assertEqual(files, self.one._check_filesystem(datasets))

+        self.assertEqual(files, self.one._check_filesystem(datasets))
+        # Test with uuid_filenames as True
+        self.one.uuid_filenames = True
+        try:
+            for file, (uuid, _) in zip(files, datasets.iterrows()):
+                file.rename(file.with_suffix(f'.{uuid}{file.suffix}'))
+            files = self.one._check_filesystem(datasets)
+            self.assertTrue(all(files))
+            self.assertIn(datasets.index[0], files[0].name)
+        finally:
+            self.one.uuid_filenames = False

 
 
 

@@ -901,7 +911,18 @@ 
Source code for one.tests.test_one
             # Load with One and check modified time is preserved
             raw_modified = One(cache_dir=tdir)._cache['_meta']['raw']['datasets']['date_modified']
             expected = self.one._cache['_meta']['modified_time'].strftime('%Y-%m-%d %H:%M')
-            self.assertEqual(raw_modified, expected)

+            self.assertEqual(raw_modified, expected)
+            # Test file lock
+            t_now = time.time()
+            with mock.patch('one.api.time') as time_mock:
+                lock_file = Path(self.one.cache_dir).joinpath('.cache.lock')
+                lock_file.touch()
+                # We expect the process to sleep at first, then after skipping time,
+                # the stale lock file should be removed.
+                time_mock.time.side_effect = (t_now, t_now + 30)
+                self.one._save_cache(save_dir=tdir, force=True)  # force flag ignores modified time
+            self.assertFalse(lock_file.exists(), 'failed to remove stale lock file')
+            time_mock.sleep.assert_called()

 
 
 

@@ -1794,6 +1815,14 @@ 
Source code for one.tests.test_one
                 mock.patch('one.remote.aws.s3_download_file', return_value=file) as method:
             self.one._download_datasets(dsets)
             self.assertEqual(len(dsets), method.call_count)
+            # Check output filename
+            _, local = method.call_args.args
+            self.assertTrue(local.as_posix().startswith(self.one.cache_dir.as_posix()))
+            self.assertTrue(local.as_posix().endswith(dsets.iloc[-1, -1]))
+            # Check keep_uuid = True
+            self.one._download_datasets(dsets, keep_uuid=True)
+            _, local = method.call_args.args
+            self.assertIn(dsets.iloc[-1].name, local.name)
 
         # Test behaviour when dataset not remotely accessible
         dsets = dsets[:1].copy()
@@ -1813,7 +1842,11 @@ 
Source code for one.tests.test_one
         with mock.patch('one.remote.aws.get_s3_from_alyx', side_effect=RuntimeError), \
                 mock.patch.object(self.one, '_download_dataset') as mock_method:
             self.one._download_datasets(dsets)
-            mock_method.assert_called_with(dsets)

+            mock_method.assert_called_with(dsets, keep_uuid=False)
+        # Test type check (download_aws only works with data frames)
+        with mock.patch.object(self.one, '_download_dataset') as mock_method:
+            self.one._download_datasets(dsets.to_dict('records'))
+            mock_method.assert_called()

 
 
 

diff --git a/genindex.html b/genindex.html
index f89f48a0..6a4c6672 100644
--- a/genindex.html
+++ b/genindex.html
@@ -1776,11 +1776,13 @@ 
U

   
-  
+  
 
diff --git a/objects.inv b/objects.inv
index 8465232cb24f30e205d6f23fdd7919def5e65f09..00951683d795e611bc926e7a270087385085d565 100644
GIT binary patch
delta 17741
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index b51d1779..52438784 100644
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"why-are-my-search-results-inconsistent-and-or-seem-to-change"]], "one": [[1, "module-one"]], "one.alf": [[2, "module-one.alf"]], "one.alf.cache": [[3, "module-one.alf.cache"]], "one.alf.exceptions": [[4, "module-one.alf.exceptions"]], "one.alf.files": [[5, "module-one.alf.files"]], "one.alf.io": [[6, "module-one.alf.io"]], "one.alf.spec": [[7, "module-one.alf.spec"]], "one.alf.spec.COLLECTION_SPEC": [[8, "one-alf-spec-collection-spec"]], "one.alf.spec.FILE_SPEC": [[9, "one-alf-spec-file-spec"]], "one.alf.spec.FULL_SPEC": [[10, "one-alf-spec-full-spec"]], "one.alf.spec.REL_PATH_SPEC": [[11, "one-alf-spec-rel-path-spec"]], "one.alf.spec.SESSION_SPEC": [[12, "one-alf-spec-session-spec"]], "one.alf.spec.SPEC_DESCRIPTION": [[13, "one-alf-spec-spec-description"]], "one.api": [[14, "module-one.api"]], "one.converters": [[15, "module-one.converters"]], "one.params": [[16, "module-one.params"]], "one.params.CACHE_DIR_DEFAULT": [[17, "one-params-cache-dir-default"]], "one.registration": [[18, "module-one.registration"]], "Summary of methods": [[18, "summary-of-methods"]], "one.remote": [[19, "module-one.remote"]], "one.remote.aws": [[20, "module-one.remote.aws"]], "one.remote.base": [[21, "module-one.remote.base"]], "one.remote.base.ALYX_JSON": [[22, "one-remote-base-alyx-json"]], "one.remote.globus": [[23, "module-one.remote.globus"]], "Setup": [[23, "setup"]], "one.remote.globus.CLIENT_KEY": [[24, "one-remote-globus-client-key"]], "one.remote.globus.DEFAULT_PAR": [[25, "one-remote-globus-default-par"]], "one.remote.globus.STATUS_MAP": [[26, "one-remote-globus-status-map"]], "one.tests": [[27, "module-one.tests"]], "one.tests.alf": [[28, "module-one.tests.alf"]], "one.tests.alf.test_alf_files": [[29, "module-one.tests.alf.test_alf_files"]], "one.tests.alf.test_alf_io": [[30, "module-one.tests.alf.test_alf_io"]], "one.tests.alf.test_alf_spec": [[31, "module-one.tests.alf.test_alf_spec"]], "one.tests.alf.test_cache": [[32, "module-one.tests.alf.test_cache"]], "one.tests.remote": [[33, "module-one.tests.remote"]], "one.tests.remote.test_aws": [[34, "module-one.tests.remote.test_aws"]], "one.tests.remote.test_base": [[35, "module-one.tests.remote.test_base"]], "one.tests.remote.test_globus": [[36, "module-one.tests.remote.test_globus"]], "one.tests.test_alyxclient": [[37, "module-one.tests.test_alyxclient"]], "one.tests.test_alyxrest": [[38, "module-one.tests.test_alyxrest"]], "one.tests.test_converters": [[39, "module-one.tests.test_converters"]], "one.tests.test_one": [[40, "module-one.tests.test_one"]], "one.tests.test_params": [[41, "module-one.tests.test_params"]], "one.tests.test_registration": [[42, "module-one.tests.test_registration"]], "one.tests.util": [[43, "module-one.tests.util"]], "one.util": [[44, "module-one.util"]], "one.webclient": [[45, "module-one.webclient"]], "ALyx Filenames (ALF)": [[46, "alyx-filenames-alf"]], "Optional components": [[46, "optional-components"]], "Collections": [[46, "collections"], [57, "Collections"]], "Revisions": [[46, "revisions"], [57, "Revisions"]], "Namespace": [[46, "namespace"]], "Timescale": [[46, "timescale"]], "Extension": [[46, "extension"]], "Extra": [[46, "extra"]], "Relations": [[46, "relations"]], "Glossary": [[46, "glossary"]], "Dataset name": [[46, "dataset-name"]], "Dataset type": [[46, "dataset-type"]], "Session path": [[46, "session-path"]], "Relative path": [[46, "relative-path"]], "ALF path": [[46, "alf-path"]], "API Reference": [[47, "api-reference"]], "Contributing to documentation": [[48, "contributing-to-documentation"]], "Structure": [[48, "structure"]], "Committing code to GitHub repo": [[48, "committing-code-to-github-repo"]], "Running locally": [[48, "running-locally"]], "Detailed Index": [[49, "detailed-index"]], "Welcome to ONE\u2019s documentation!": [[50, "welcome-to-one-s-documentation"]], "Using ONE to access data": [[50, null]], "Using ONE with Alyx": [[50, null]], "Using ONE to share data": [[50, null]], "ALF": [[50, null]], "Misc": [[50, null]], "Listing Alyx Filenames": [[51, "Listing-Alyx-Filenames"]], "Releasing data with ONE": [[52, "Releasing-data-with-ONE"]], "Downloading example data": [[52, "Downloading-example-data"]], "Validating your data": [[52, "Validating-your-data"]], "Generating the cache": [[52, "Generating-the-cache"]], "Checking the cache": [[52, "Checking-the-cache"]], "Datasets and their types": [[53, "Datasets-and-their-types"]], "Datasets": [[53, "Datasets"], [64, "datasets"]], "Dataset types": [[53, "Dataset-types"]], "Experiment IDs": [[54, "Experiment-IDs"], [64, "experiment-ids"]], "ONE REST queries": [[55, "ONE-REST-queries"]], "one.search vs one.alyx.rest": [[55, "one.search-vs-one.alyx.rest"]], "Accessing other Alyx tables": [[55, "Accessing-other-Alyx-tables"]], "Searching with one.alyx.rest": [[55, "Searching-with-one.alyx.rest"]], "Listing with ONE": [[56, "Listing-with-ONE"]], "Filtering lists": [[56, "Filtering-lists"]], "Combining with load methods": [[56, "Combining-with-load-methods"]], "Listing aggregate datasets": [[56, "Listing-aggregate-datasets"]], "Loading with ONE": [[57, "Loading-with-ONE"]], "Download only": [[57, "Download-only"]], "Advanced loading": [[57, "Advanced-loading"]], "Filtering attributes": [[57, "Filtering-attributes"]], "Loading with file name parts": [[57, "Loading-with-file-name-parts"]], "More regex examples": [[57, "More-regex-examples"]], "Load spike times from a probe UUID": [[57, "Load-spike-times-from-a-probe-UUID"]], "Loading with relative paths": [[57, "Loading-with-relative-paths"]], "Loading with timeseries": [[57, "Loading-with-timeseries"]], "Loading collections": [[57, "Loading-collections"]], "Loading aggregate datasets": [[57, "Loading-aggregate-datasets"]], "ONE API modes": [[58, "ONE-API-modes"]], "Online vs Offline": [[58, "Online-vs-Offline"]], "Query modes": [[58, "Query-modes"]], "REST caching": [[58, "REST-caching"]], "Refreshing the cache tables": [[58, "Refreshing-the-cache-tables"]], "Summary": [[58, "Summary"]], "ONE Quick Start": [[59, "ONE-Quick-Start"]], "Searching with ONE": [[60, "Searching-with-ONE"]], "Advanced searching": [[60, "Advanced-searching"]], "Gotchas": [[60, "Gotchas"]], "Difference between search term behaviours": [[60, "Difference-between-search-term-behaviours"]], "Difference between remote mode search terms": [[60, "Difference-between-remote-mode-search-terms"]], "The dataset, datasets and dataset_types remote arguments": [[60, "The-dataset,-datasets-and-dataset_types-remote-arguments"]], "Regex systems between modes": [[60, "Regex-systems-between-modes"]], "Searching data with a release tag": [[60, "Searching-data-with-a-release-tag"]], "Searching insertions": [[60, "Searching-insertions"]], "Recording data access": [[61, "Recording-data-access"]], "How to set up and save": [[61, "How-to-set-up-and-save"]], "Example": [[61, "Example"]], "Useful Alyx REST queries": [[62, "Useful-Alyx-REST-queries"]], "Exploring the REST endpoints": [[62, "Exploring-the-REST-endpoints"]], "Example queries": [[62, "Example-queries"]], "convert session dicts to eids": [[62, "convert-session-dicts-to-eids"]], "list sessions that have histology available": [[62, "list-sessions-that-have-histology-available"]], "list experiments spanning channel locations": [[62, "list-experiments-spanning-channel-locations"]], "list sessions that do not have matlab in the project name": [[62, "list-sessions-that-do-not-have-matlab-in-the-project-name"]], "list insertions that have alignment resolved": [[62, "list-insertions-that-have-alignment-resolved"]], "list names of users who have aligned specified insertion": [[62, "list-names-of-users-who-have-aligned-specified-insertion"]], "list probe insertions for a given task protocol": [[62, "list-probe-insertions-for-a-given-task-protocol"]], "list spiken sorting tasks that have errored in a given lab": [[62, "list-spiken-sorting-tasks-that-have-errored-in-a-given-lab"]], "list ephys sessions that have errored tasks": [[62, "list-ephys-sessions-that-have-errored-tasks"]], "rerun / set errored tasks to Waiting": [[62, "rerun-/-set-errored-tasks-to-Waiting"]], "list sessions where extended QC exists for any video": [[62, "list-sessions-where-extended-QC-exists-for-any-video"]], "list sessions associated with a given release tag": [[62, "list-sessions-associated-with-a-given-release-tag"]], "Field lookup reference": [[62, "Field-lookup-reference"]], "Related field lookups": [[62, "Related-field-lookups"]], "JSON field lookups": [[62, "JSON-field-lookups"]], "Looking up fields": [[62, "Looking-up-fields"]], "contains": [[62, "contains"], [62, "contains-1"]], "contained_by": [[62, "contained_by"]], "has_key": [[62, "has_key"]], "has_keys": [[62, "has_keys"]], "has_any_keys": [[62, "has_any_keys"]], "exact": [[62, "exact"]], "iexact": [[62, "iexact"]], "icontains": [[62, "icontains"]], "in": [[62, "in"]], "gt": [[62, "gt"]], "gte": [[62, "gte"]], "lt": [[62, "lt"]], "lte": [[62, "lte"]], "startswith": [[62, "startswith"]], "istartswith": [[62, "istartswith"]], "endswith": [[62, "endswith"]], "iendswith": [[62, "iendswith"]], "not": [[62, "not"]], "range": [[62, "range"]], "date": [[62, "date"]], "year": [[62, "year"]], "iso_year": [[62, "iso_year"]], "month": [[62, "month"]], "day": [[62, "day"]], "week": [[62, "week"]], "week_day": [[62, "week_day"]], "iso_week_day": [[62, "iso_week_day"]], "quarter": [[62, "quarter"]], "time": [[62, "time"]], "hour": [[62, "hour"]], "minute": [[62, "minute"]], "second": [[62, "second"]], "isnull": [[62, "isnull"]], "regex": [[62, "regex"]], "iregex": [[62, "iregex"]], "ONE installation and setup": [[63, "one-installation-and-setup"]], "1. Installation": [[63, "installation"]], "2. Setup": [[63, "setup"]], "Connect to IBL Public database": [[63, "connect-to-ibl-public-database"]], "Using local folder structure": [[63, "using-local-folder-structure"]], "Connecting to specific database (relevant for IBL users)": [[63, "connecting-to-specific-database-relevant-for-ibl-users"]], "3. Post setup": [[63, "post-setup"]], "4. Update": [[63, "update"]], "Introduction to ONE (Open Neurophysiology Environment)": [[64, "introduction-to-one-open-neurophysiology-environment"]], "How the ONE API works": [[64, "how-the-one-api-works"]], "Searching for experiments": [[64, "searching-for-experiments"]], "Collections and revisions": [[64, "collections-and-revisions"]], "Listing data": [[64, "listing-data"]], "Loading data": [[64, "loading-data"]], "For data sharers": [[64, "for-data-sharers"]]}, "indexentries": {"module": [[1, "module-one"], [2, "module-one.alf"], [3, "module-one.alf.cache"], [4, "module-one.alf.exceptions"], [5, "module-one.alf.files"], [6, "module-one.alf.io"], [7, "module-one.alf.spec"], [14, "module-one.api"], [15, "module-one.converters"], [16, "module-one.params"], [18, "module-one.registration"], [19, "module-one.remote"], [20, "module-one.remote.aws"], [21, "module-one.remote.base"], [23, "module-one.remote.globus"], [27, "module-one.tests"], [28, "module-one.tests.alf"], [29, 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"one.alf.exceptions.ALFError"]], "alfmultiplecollectionsfound": [[4, "one.alf.exceptions.ALFMultipleCollectionsFound"]], "alfmultipleobjectsfound": [[4, "one.alf.exceptions.ALFMultipleObjectsFound"]], "alfmultiplerevisionsfound": [[4, "one.alf.exceptions.ALFMultipleRevisionsFound"]], "alfobjectnotfound": [[4, "one.alf.exceptions.ALFObjectNotFound"]], "alyxsubjectnotfound": [[4, "one.alf.exceptions.AlyxSubjectNotFound"]], "explanation (alferror attribute)": [[4, "id0"], [4, "one.alf.exceptions.ALFError.explanation"]], "explanation (alfmultiplecollectionsfound attribute)": [[4, "one.alf.exceptions.ALFMultipleCollectionsFound.explanation"]], "explanation (alfmultipleobjectsfound attribute)": [[4, "one.alf.exceptions.ALFMultipleObjectsFound.explanation"]], "explanation (alfmultiplerevisionsfound attribute)": [[4, "one.alf.exceptions.ALFMultipleRevisionsFound.explanation"]], "explanation (alfobjectnotfound attribute)": [[4, "one.alf.exceptions.ALFObjectNotFound.explanation"]], "explanation (alyxsubjectnotfound attribute)": [[4, "one.alf.exceptions.AlyxSubjectNotFound.explanation"]], "one.alf.exceptions": [[4, "module-one.alf.exceptions"]], "add_uuid_string() (in module one.alf.files)": [[5, "one.alf.files.add_uuid_string"]], "filename_parts() (in module one.alf.files)": [[5, "one.alf.files.filename_parts"]], "folder_parts() (in module one.alf.files)": [[5, "one.alf.files.folder_parts"]], "full_path_parts() (in module one.alf.files)": [[5, "one.alf.files.full_path_parts"]], "get_alf_path() (in module one.alf.files)": [[5, "one.alf.files.get_alf_path"]], "get_session_path() (in module one.alf.files)": [[5, "one.alf.files.get_session_path"]], "one.alf.files": [[5, "module-one.alf.files"]], "padded_sequence() (in module one.alf.files)": [[5, "one.alf.files.padded_sequence"]], "rel_path_parts() (in module one.alf.files)": [[5, "one.alf.files.rel_path_parts"]], "remove_uuid_string() (in module one.alf.files)": [[5, "one.alf.files.remove_uuid_string"]], "session_path_parts() (in module one.alf.files)": [[5, "one.alf.files.session_path_parts"]], "alfbunch (class in one.alf.io)": [[6, "one.alf.io.AlfBunch"]], "append() (alfbunch method)": [[6, "one.alf.io.AlfBunch.append"]], "check_dimensions (alfbunch property)": [[6, "one.alf.io.AlfBunch.check_dimensions"]], "check_dimensions() (in module one.alf.io)": [[6, "one.alf.io.check_dimensions"]], "dataframe() (in module one.alf.io)": [[6, "one.alf.io.dataframe"]], "exists() (in module one.alf.io)": [[6, "one.alf.io.exists"]], "filter_by() (in module one.alf.io)": [[6, "one.alf.io.filter_by"]], "from_df() (alfbunch static method)": [[6, "one.alf.io.AlfBunch.from_df"]], "iter_datasets() (in module one.alf.io)": [[6, "one.alf.io.iter_datasets"]], "iter_sessions() (in module one.alf.io)": [[6, "one.alf.io.iter_sessions"]], "load_file_content() (in module one.alf.io)": [[6, "one.alf.io.load_file_content"]], "load_object() (in module one.alf.io)": [[6, "one.alf.io.load_object"]], "next_num_folder() (in module one.alf.io)": [[6, "one.alf.io.next_num_folder"]], "one.alf.io": [[6, "module-one.alf.io"]], "read_ts() (in module one.alf.io)": [[6, "one.alf.io.read_ts"]], "remove_empty_folders() (in module one.alf.io)": [[6, "one.alf.io.remove_empty_folders"]], "remove_uuid_file() (in module one.alf.io)": [[6, "one.alf.io.remove_uuid_file"]], "remove_uuid_recursive() (in module one.alf.io)": [[6, "one.alf.io.remove_uuid_recursive"]], "save_metadata() (in module one.alf.io)": [[6, "one.alf.io.save_metadata"]], "save_object_npy() (in module one.alf.io)": [[6, "one.alf.io.save_object_npy"]], "to_df() (alfbunch method)": [[6, "one.alf.io.AlfBunch.to_df"]], "ts2vec() (in module one.alf.io)": [[6, "one.alf.io.ts2vec"]], "collection_spec (in module one.alf.spec)": [[7, "one.alf.spec.COLLECTION_SPEC"], [8, "one.alf.spec.COLLECTION_SPEC"]], "file_spec (in module one.alf.spec)": [[7, "one.alf.spec.FILE_SPEC"], [9, "one.alf.spec.FILE_SPEC"]], "full_spec (in module one.alf.spec)": [[7, "one.alf.spec.FULL_SPEC"], [10, "one.alf.spec.FULL_SPEC"]], "rel_path_spec (in module one.alf.spec)": [[7, "one.alf.spec.REL_PATH_SPEC"], [11, "one.alf.spec.REL_PATH_SPEC"]], "session_spec (in module one.alf.spec)": [[7, "one.alf.spec.SESSION_SPEC"], [12, "one.alf.spec.SESSION_SPEC"]], "spec_description (in module one.alf.spec)": [[7, "one.alf.spec.SPEC_DESCRIPTION"], [13, "one.alf.spec.SPEC_DESCRIPTION"]], "describe() (in module one.alf.spec)": [[7, "one.alf.spec.describe"]], "is_session_path() (in module one.alf.spec)": [[7, "one.alf.spec.is_session_path"]], "is_uuid() (in module one.alf.spec)": [[7, "one.alf.spec.is_uuid"]], "is_uuid_string() (in module one.alf.spec)": [[7, "one.alf.spec.is_uuid_string"]], "is_valid() (in module one.alf.spec)": [[7, "one.alf.spec.is_valid"]], "one.alf.spec": [[7, "module-one.alf.spec"]], "path_pattern() (in module one.alf.spec)": [[7, "one.alf.spec.path_pattern"]], "readablealf() (in module one.alf.spec)": [[7, "one.alf.spec.readableALF"]], "regex() (in module one.alf.spec)": [[7, "one.alf.spec.regex"]], "to_alf() (in module one.alf.spec)": [[7, "one.alf.spec.to_alf"]], "one() (in module one.api)": [[14, "one.api.ONE"]], "one (class in one.api)": [[14, "one.api.One"]], "onealyx (class in one.api)": [[14, "one.api.OneAlyx"]], "alyx (onealyx property)": [[14, "one.api.OneAlyx.alyx"]], "cache_dir (onealyx property)": [[14, "one.api.OneAlyx.cache_dir"]], "dataset2type() (onealyx method)": [[14, "one.api.OneAlyx.dataset2type"]], "describe_dataset() (onealyx method)": [[14, "one.api.OneAlyx.describe_dataset"]], "describe_revision() (onealyx method)": [[14, "one.api.OneAlyx.describe_revision"]], "eid2path() (onealyx method)": [[14, "one.api.OneAlyx.eid2path"]], "eid2pid() (onealyx method)": [[14, "one.api.OneAlyx.eid2pid"]], "get_details() (one method)": [[14, "one.api.One.get_details"]], "get_details() (onealyx method)": [[14, "one.api.OneAlyx.get_details"]], "list_aggregates() (onealyx method)": [[14, "one.api.OneAlyx.list_aggregates"]], "list_collections() (one method)": [[14, "one.api.One.list_collections"]], "list_datasets() (one method)": [[14, "one.api.One.list_datasets"]], "list_datasets() (onealyx method)": [[14, "one.api.OneAlyx.list_datasets"]], "list_revisions() (one method)": [[14, "one.api.One.list_revisions"]], "list_subjects() (one method)": [[14, "one.api.One.list_subjects"]], "load_aggregate() (onealyx method)": [[14, "one.api.OneAlyx.load_aggregate"]], "load_cache() (one method)": [[14, "one.api.One.load_cache"]], "load_cache() (onealyx method)": [[14, "one.api.OneAlyx.load_cache"]], "load_collection() (one method)": [[14, "one.api.One.load_collection"]], "load_dataset() (one method)": [[14, "one.api.One.load_dataset"]], "load_dataset_from_id() (one method)": [[14, "one.api.One.load_dataset_from_id"]], "load_datasets() (one method)": [[14, "one.api.One.load_datasets"]], "load_object() (one method)": [[14, "one.api.One.load_object"]], "offline (one property)": [[14, "one.api.One.offline"]], "one.api": [[14, "module-one.api"]], "path2eid() (onealyx method)": [[14, "one.api.OneAlyx.path2eid"]], "path2url() (onealyx method)": [[14, "one.api.OneAlyx.path2url"]], "pid2eid() (onealyx method)": [[14, "one.api.OneAlyx.pid2eid"]], "refresh_cache() (one method)": [[14, "one.api.One.refresh_cache"]], "save_cache() (one method)": [[14, "one.api.One.save_cache"]], "save_loaded_ids() (one method)": [[14, "one.api.One.save_loaded_ids"]], "search() (one method)": [[14, "one.api.One.search"]], "search() (onealyx method)": [[14, "one.api.OneAlyx.search"]], "search_insertions() (onealyx method)": [[14, "one.api.OneAlyx.search_insertions"]], "search_terms() (one method)": [[14, "one.api.One.search_terms"]], "search_terms() (onealyx method)": [[14, "one.api.OneAlyx.search_terms"]], "setup() (one static method)": [[14, "one.api.One.setup"]], "setup() (onealyx static method)": [[14, "one.api.OneAlyx.setup"]], "type2datasets() (onealyx method)": [[14, "one.api.OneAlyx.type2datasets"]], "conversionmixin (class in one.converters)": [[15, "one.converters.ConversionMixin"]], "dict2ref() (conversionmixin static method)": [[15, "one.converters.ConversionMixin.dict2ref"]], "eid2path() (conversionmixin method)": [[15, "one.converters.ConversionMixin.eid2path"]], "eid2ref() (conversionmixin method)": [[15, "one.converters.ConversionMixin.eid2ref"]], "is_exp_ref() (conversionmixin static method)": [[15, "one.converters.ConversionMixin.is_exp_ref"]], "one.converters": [[15, "module-one.converters"]], "one_path_from_dataset() (in module one.converters)": [[15, "one.converters.one_path_from_dataset"]], "parse_values() (in module one.converters)": [[15, "one.converters.parse_values"]], "path2eid() (conversionmixin method)": [[15, "one.converters.ConversionMixin.path2eid"]], "path2record() (conversionmixin method)": [[15, "one.converters.ConversionMixin.path2record"]], "path2ref() (conversionmixin static method)": [[15, "one.converters.ConversionMixin.path2ref"]], "path2url() (conversionmixin method)": [[15, "one.converters.ConversionMixin.path2url"]], "path_from_dataset() (in module one.converters)": [[15, "one.converters.path_from_dataset"]], "path_from_filerecord() (in module one.converters)": [[15, "one.converters.path_from_filerecord"]], "record2path() (conversionmixin method)": [[15, "one.converters.ConversionMixin.record2path"]], "record2url() (conversionmixin method)": [[15, "one.converters.ConversionMixin.record2url"]], "recurse() (in module one.converters)": [[15, "one.converters.recurse"]], "ref2dict() (conversionmixin static method)": [[15, "one.converters.ConversionMixin.ref2dict"]], "ref2eid() (conversionmixin method)": [[15, "one.converters.ConversionMixin.ref2eid"]], "ref2path() (conversionmixin method)": [[15, "one.converters.ConversionMixin.ref2path"]], "session_record2path() (in module one.converters)": [[15, "one.converters.session_record2path"]], "to_eid() (conversionmixin method)": [[15, "one.converters.ConversionMixin.to_eid"]], "cache_dir_default (in module one.params)": [[16, "one.params.CACHE_DIR_DEFAULT"], [17, "one.params.CACHE_DIR_DEFAULT"]], "check_cache_conflict() (in module one.params)": [[16, "one.params.check_cache_conflict"]], "default() (in module one.params)": [[16, "one.params.default"]], "get() (in module one.params)": [[16, "one.params.get"]], "get_cache_dir() (in module one.params)": [[16, "one.params.get_cache_dir"]], "get_default_client() (in module one.params)": [[16, "one.params.get_default_client"]], "get_params_dir() (in module one.params)": [[16, "one.params.get_params_dir"]], "one.params": [[16, "module-one.params"]], "save() (in module one.params)": [[16, "one.params.save"]], "setup() (in module one.params)": [[16, "one.params.setup"]], "registrationclient (class in one.registration)": [[18, "one.registration.RegistrationClient"]], "assert_exists() (registrationclient method)": [[18, "one.registration.RegistrationClient.assert_exists"]], "create_new_session() (registrationclient method)": [[18, "one.registration.RegistrationClient.create_new_session"]], "create_sessions() (registrationclient method)": [[18, "one.registration.RegistrationClient.create_sessions"]], "ensure_iso8601() (registrationclient static method)": [[18, "one.registration.RegistrationClient.ensure_ISO8601"]], "find_files() (registrationclient method)": [[18, "one.registration.RegistrationClient.find_files"]], "get_dataset_type() (in module one.registration)": [[18, "one.registration.get_dataset_type"]], "one.registration": [[18, "module-one.registration"]], "register_files() (registrationclient method)": [[18, "one.registration.RegistrationClient.register_files"]], "register_session() (registrationclient method)": [[18, "one.registration.RegistrationClient.register_session"]], "register_water_administration() (registrationclient method)": [[18, "one.registration.RegistrationClient.register_water_administration"]], "register_weight() (registrationclient method)": [[18, "one.registration.RegistrationClient.register_weight"]], "one.remote": [[19, "module-one.remote"]], "get_aws_access_keys() (in module one.remote.aws)": [[20, "one.remote.aws.get_aws_access_keys"]], "get_s3_from_alyx() (in module one.remote.aws)": [[20, "one.remote.aws.get_s3_from_alyx"]], "get_s3_public() (in module one.remote.aws)": [[20, "one.remote.aws.get_s3_public"]], "get_s3_virtual_host() (in module one.remote.aws)": [[20, "one.remote.aws.get_s3_virtual_host"]], "is_folder() (in module one.remote.aws)": [[20, "one.remote.aws.is_folder"]], "one.remote.aws": [[20, "module-one.remote.aws"]], "s3_download_file() (in module one.remote.aws)": [[20, "one.remote.aws.s3_download_file"]], "s3_download_folder() (in module one.remote.aws)": [[20, "one.remote.aws.s3_download_folder"]], "url2uri() (in module one.remote.aws)": [[20, "one.remote.aws.url2uri"]], "alyx_json (in module one.remote.base)": [[21, "one.remote.base.ALYX_JSON"], [22, "one.remote.base.ALYX_JSON"]], "downloadclient (class in one.remote.base)": [[21, "one.remote.base.DownloadClient"]], "download_file() (downloadclient method)": [[21, "one.remote.base.DownloadClient.download_file"]], "load_client_params() (in module one.remote.base)": [[21, "one.remote.base.load_client_params"]], "one.remote.base": [[21, "module-one.remote.base"]], "repo_from_alyx() (downloadclient static method)": [[21, "one.remote.base.DownloadClient.repo_from_alyx"]], "save_client_params() (in module one.remote.base)": [[21, "one.remote.base.save_client_params"]], "setup() (downloadclient static method)": [[21, "one.remote.base.DownloadClient.setup"]], "to_address() (downloadclient method)": [[21, "one.remote.base.DownloadClient.to_address"]], "globus (class in one.remote.globus)": [[23, "one.remote.globus.Globus"]], "add_endpoint() (globus method)": [[23, "one.remote.globus.Globus.add_endpoint"]], "as_globus_path() (in module one.remote.globus)": [[23, "one.remote.globus.as_globus_path"]], "delete_data() (globus method)": [[23, "one.remote.globus.Globus.delete_data"]], "download_file() (globus method)": [[23, "one.remote.globus.Globus.download_file"]], "fetch_endpoints_from_alyx() (globus method)": [[23, "one.remote.globus.Globus.fetch_endpoints_from_alyx"]], "get_lab_from_endpoint_id() (in module one.remote.globus)": [[23, "one.remote.globus.get_lab_from_endpoint_id"]], "is_logged_in (globus property)": [[23, "one.remote.globus.Globus.is_logged_in"]], "login() (globus method)": [[23, "one.remote.globus.Globus.login"]], "logout() (globus method)": [[23, "one.remote.globus.Globus.logout"]], "ls() (globus method)": [[23, "one.remote.globus.Globus.ls"]], "mv() (globus method)": [[23, "one.remote.globus.Globus.mv"]], "one.remote.globus": [[23, "module-one.remote.globus"]], "run_task() (globus method)": [[23, "one.remote.globus.Globus.run_task"]], "setup() (globus static method)": [[23, "one.remote.globus.Globus.setup"]], "task_wait_async() (globus method)": [[23, "one.remote.globus.Globus.task_wait_async"]], "to_address() (globus method)": [[23, "one.remote.globus.Globus.to_address"]], "transfer_data() (globus method)": [[23, "one.remote.globus.Globus.transfer_data"]], "client_key (in module one.remote.globus)": [[24, "one.remote.globus.CLIENT_KEY"]], "default_par (in module one.remote.globus)": [[25, "one.remote.globus.DEFAULT_PAR"]], "status_map (in module one.remote.globus)": [[26, "one.remote.globus.STATUS_MAP"]], "one.tests": [[27, "module-one.tests"]], "one.tests.alf": [[28, "module-one.tests.alf"]], "testalfget (class in one.tests.alf.test_alf_files)": [[29, "one.tests.alf.test_alf_files.TestALFGet"]], "testalfparse (class in one.tests.alf.test_alf_files)": [[29, "one.tests.alf.test_alf_files.TestAlfParse"]], "one.tests.alf.test_alf_files": [[29, "module-one.tests.alf.test_alf_files"]], "test_add_uuid() (testalfparse method)": [[29, "one.tests.alf.test_alf_files.TestAlfParse.test_add_uuid"]], "test_filename_parts() (testalfparse method)": [[29, "one.tests.alf.test_alf_files.TestAlfParse.test_filename_parts"]], "test_folder_parts() (testalfparse method)": [[29, "one.tests.alf.test_alf_files.TestAlfParse.test_folder_parts"]], "test_full_path_parts() (testalfparse method)": [[29, "one.tests.alf.test_alf_files.TestAlfParse.test_full_path_parts"]], "test_get_alf_path() (testalfget method)": [[29, "one.tests.alf.test_alf_files.TestALFGet.test_get_alf_path"]], "test_get_session_folder() (testalfget method)": [[29, "one.tests.alf.test_alf_files.TestALFGet.test_get_session_folder"]], "test_isdatetime() (testalfparse method)": [[29, "one.tests.alf.test_alf_files.TestAlfParse.test_isdatetime"]], "test_padded_sequence() (testalfparse method)": [[29, "one.tests.alf.test_alf_files.TestAlfParse.test_padded_sequence"]], "test_rel_path_parts() (testalfparse method)": [[29, "one.tests.alf.test_alf_files.TestAlfParse.test_rel_path_parts"]], "test_remove_uuid() (testalfparse method)": [[29, "one.tests.alf.test_alf_files.TestAlfParse.test_remove_uuid"]], "test_session_path_parts() (testalfparse method)": [[29, "one.tests.alf.test_alf_files.TestAlfParse.test_session_path_parts"]], "testalffolders (class in one.tests.alf.test_alf_io)": [[30, "one.tests.alf.test_alf_io.TestALFFolders"]], "testalfbunch (class in one.tests.alf.test_alf_io)": [[30, "one.tests.alf.test_alf_io.TestAlfBunch"]], "testuuid_files (class in one.tests.alf.test_alf_io)": [[30, "one.tests.alf.test_alf_io.TestUUID_Files"]], "testsalf (class in one.tests.alf.test_alf_io)": [[30, "one.tests.alf.test_alf_io.TestsAlf"]], "testsalfpartsfilters (class in one.tests.alf.test_alf_io)": [[30, "one.tests.alf.test_alf_io.TestsAlfPartsFilters"]], "testsloadfile (class in one.tests.alf.test_alf_io)": [[30, "one.tests.alf.test_alf_io.TestsLoadFile"]], "testsloadfilenonstandard (class in 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"one.tests.alf.test_alf_io.TestsAlfPartsFilters.test_filter_by"]], "test_from_dataframe() (testalfbunch method)": [[30, "one.tests.alf.test_alf_io.TestAlfBunch.test_from_dataframe"]], "test_iter_datasets() (testalffolders method)": [[30, "one.tests.alf.test_alf_io.TestALFFolders.test_iter_datasets"]], "test_iter_sessions() (testalffolders method)": [[30, "one.tests.alf.test_alf_io.TestALFFolders.test_iter_sessions"]], "test_load_file_content() (testsloadfile method)": [[30, "one.tests.alf.test_alf_io.TestsLoadFile.test_load_file_content"]], "test_load_object() (testsalf method)": [[30, "one.tests.alf.test_alf_io.TestsAlf.test_load_object"]], "test_load_sparse_npz() (testsloadfilenonstandard method)": [[30, "one.tests.alf.test_alf_io.TestsLoadFileNonStandard.test_load_sparse_npz"]], "test_ls() (testsalf method)": [[30, "one.tests.alf.test_alf_io.TestsAlf.test_ls"]], "test_metadata_columns() (testsalf method)": [[30, "one.tests.alf.test_alf_io.TestsAlf.test_metadata_columns"]], "test_metadata_columns_uuid() (testsalf method)": [[30, "one.tests.alf.test_alf_io.TestsAlf.test_metadata_columns_UUID"]], "test_next_num_folder() (testalffolders method)": [[30, "one.tests.alf.test_alf_io.TestALFFolders.test_next_num_folder"]], "test_npy_parts_and_file_filters() (testsalfpartsfilters method)": [[30, "one.tests.alf.test_alf_io.TestsAlfPartsFilters.test_npy_parts_and_file_filters"]], "test_read_ts() (testsalf method)": [[30, "one.tests.alf.test_alf_io.TestsAlf.test_read_ts"]], "test_remove_empty_folders() (testalffolders method)": [[30, "one.tests.alf.test_alf_io.TestALFFolders.test_remove_empty_folders"]], "test_remove_uuid() (testuuid_files method)": [[30, "one.tests.alf.test_alf_io.TestUUID_Files.test_remove_uuid"]], "test_remove_uuid_recusive() (testuuid_files method)": [[30, "one.tests.alf.test_alf_io.TestUUID_Files.test_remove_uuid_recusive"]], "test_save_npy() (testsalf method)": [[30, "one.tests.alf.test_alf_io.TestsAlf.test_save_npy"]], 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\ No newline at end of file
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"Filtering-lists"]], "Combining with load methods": [[56, "Combining-with-load-methods"]], "Listing aggregate datasets": [[56, "Listing-aggregate-datasets"]], "Loading with ONE": [[57, "Loading-with-ONE"]], "Download only": [[57, "Download-only"]], "Advanced loading": [[57, "Advanced-loading"]], "Filtering attributes": [[57, "Filtering-attributes"]], "Loading with file name parts": [[57, "Loading-with-file-name-parts"]], "More regex examples": [[57, "More-regex-examples"]], "Load spike times from a probe UUID": [[57, "Load-spike-times-from-a-probe-UUID"]], "Loading with relative paths": [[57, "Loading-with-relative-paths"]], "Loading with timeseries": [[57, "Loading-with-timeseries"]], "Loading collections": [[57, "Loading-collections"]], "Loading aggregate datasets": [[57, "Loading-aggregate-datasets"]], "ONE API modes": [[58, "ONE-API-modes"]], "Online vs Offline": [[58, "Online-vs-Offline"]], "Query modes": [[58, "Query-modes"]], "REST caching": [[58, "REST-caching"]], "Refreshing the cache tables": [[58, "Refreshing-the-cache-tables"]], "Summary": [[58, "Summary"]], "ONE Quick Start": [[59, "ONE-Quick-Start"]], "Searching with ONE": [[60, "Searching-with-ONE"]], "Advanced searching": [[60, "Advanced-searching"]], "Gotchas": [[60, "Gotchas"]], "Difference between search term behaviours": [[60, "Difference-between-search-term-behaviours"]], "Difference between remote mode search terms": [[60, "Difference-between-remote-mode-search-terms"]], "The dataset, datasets and dataset_types remote arguments": [[60, "The-dataset,-datasets-and-dataset_types-remote-arguments"]], "Regex systems between modes": [[60, "Regex-systems-between-modes"]], "Searching data with a release tag": [[60, "Searching-data-with-a-release-tag"]], "Searching insertions": [[60, "Searching-insertions"]], "Recording data access": [[61, "Recording-data-access"]], "How to set up and save": [[61, "How-to-set-up-and-save"]], "Example": [[61, "Example"]], "Useful Alyx REST queries": [[62, "Useful-Alyx-REST-queries"]], "Exploring the REST endpoints": [[62, "Exploring-the-REST-endpoints"]], "Example queries": [[62, "Example-queries"]], "convert session dicts to eids": [[62, "convert-session-dicts-to-eids"]], "list sessions that have histology available": [[62, "list-sessions-that-have-histology-available"]], "list experiments spanning channel locations": [[62, "list-experiments-spanning-channel-locations"]], "list sessions that do not have matlab in the project name": [[62, "list-sessions-that-do-not-have-matlab-in-the-project-name"]], "list insertions that have alignment resolved": [[62, "list-insertions-that-have-alignment-resolved"]], "list names of users who have aligned specified insertion": [[62, "list-names-of-users-who-have-aligned-specified-insertion"]], "list probe insertions for a given task protocol": [[62, "list-probe-insertions-for-a-given-task-protocol"]], "list spiken sorting tasks that have errored in a given lab": [[62, "list-spiken-sorting-tasks-that-have-errored-in-a-given-lab"]], "list ephys sessions that have errored tasks": [[62, "list-ephys-sessions-that-have-errored-tasks"]], "rerun / set errored tasks to Waiting": [[62, "rerun-/-set-errored-tasks-to-Waiting"]], "list sessions where extended QC exists for any video": [[62, "list-sessions-where-extended-QC-exists-for-any-video"]], "list sessions associated with a given release tag": [[62, "list-sessions-associated-with-a-given-release-tag"]], "Field lookup reference": [[62, "Field-lookup-reference"]], "Related field lookups": [[62, "Related-field-lookups"]], "JSON field lookups": [[62, "JSON-field-lookups"]], "Looking up fields": [[62, "Looking-up-fields"]], "contains": [[62, "contains"], [62, "contains-1"]], "contained_by": [[62, "contained_by"]], "has_key": [[62, "has_key"]], "has_keys": [[62, "has_keys"]], "has_any_keys": [[62, "has_any_keys"]], "exact": [[62, "exact"]], "iexact": [[62, "iexact"]], "icontains": [[62, "icontains"]], "in": [[62, "in"]], "gt": [[62, "gt"]], "gte": [[62, "gte"]], "lt": [[62, "lt"]], "lte": [[62, "lte"]], "startswith": [[62, "startswith"]], "istartswith": [[62, "istartswith"]], "endswith": [[62, "endswith"]], "iendswith": [[62, "iendswith"]], "not": [[62, "not"]], "range": [[62, "range"]], "date": [[62, "date"]], "year": [[62, "year"]], "iso_year": [[62, "iso_year"]], "month": [[62, "month"]], "day": [[62, "day"]], "week": [[62, "week"]], "week_day": [[62, "week_day"]], "iso_week_day": [[62, "iso_week_day"]], "quarter": [[62, "quarter"]], "time": [[62, "time"]], "hour": [[62, "hour"]], "minute": [[62, "minute"]], "second": [[62, "second"]], "isnull": [[62, "isnull"]], "regex": [[62, "regex"]], "iregex": [[62, "iregex"]], "ONE installation and setup": [[63, "one-installation-and-setup"]], "1. Installation": [[63, "installation"]], "2. Setup": [[63, "setup"]], "Connect to IBL Public database": [[63, "connect-to-ibl-public-database"]], "Using local folder structure": [[63, "using-local-folder-structure"]], "Connecting to specific database (relevant for IBL users)": [[63, "connecting-to-specific-database-relevant-for-ibl-users"]], "3. Post setup": [[63, "post-setup"]], "4. Update": [[63, "update"]], "Introduction to ONE (Open Neurophysiology Environment)": [[64, "introduction-to-one-open-neurophysiology-environment"]], "How the ONE API works": [[64, "how-the-one-api-works"]], "Searching for experiments": [[64, "searching-for-experiments"]], "Collections and revisions": [[64, "collections-and-revisions"]], "Listing data": [[64, "listing-data"]], "Loading data": [[64, "loading-data"]], "For data sharers": [[64, "for-data-sharers"]]}, "indexentries": {"module": [[1, "module-one"], [2, "module-one.alf"], [3, "module-one.alf.cache"], [4, "module-one.alf.exceptions"], [5, "module-one.alf.files"], [6, "module-one.alf.io"], [7, "module-one.alf.spec"], [14, "module-one.api"], [15, "module-one.converters"], [16, "module-one.params"], [18, "module-one.registration"], [19, "module-one.remote"], [20, "module-one.remote.aws"], [21, "module-one.remote.base"], [23, "module-one.remote.globus"], [27, "module-one.tests"], [28, "module-one.tests.alf"], [29, "module-one.tests.alf.test_alf_files"], [30, "module-one.tests.alf.test_alf_io"], [31, "module-one.tests.alf.test_alf_spec"], [32, "module-one.tests.alf.test_cache"], [33, "module-one.tests.remote"], [34, "module-one.tests.remote.test_aws"], [35, "module-one.tests.remote.test_base"], [36, "module-one.tests.remote.test_globus"], [37, "module-one.tests.test_alyxclient"], [38, "module-one.tests.test_alyxrest"], [39, "module-one.tests.test_converters"], [40, "module-one.tests.test_one"], [41, "module-one.tests.test_params"], [42, "module-one.tests.test_registration"], [43, "module-one.tests.util"], [44, "module-one.util"], [45, "module-one.webclient"]], "one": [[1, "module-one"]], "one.alf": [[2, "module-one.alf"]], "make_parquet_db() (in module one.alf.cache)": [[3, "one.alf.cache.make_parquet_db"]], "one.alf.cache": [[3, "module-one.alf.cache"]], "remove_missing_datasets() (in module one.alf.cache)": [[3, "one.alf.cache.remove_missing_datasets"]], "alferror": [[4, "one.alf.exceptions.ALFError"]], "alfmultiplecollectionsfound": [[4, "one.alf.exceptions.ALFMultipleCollectionsFound"]], "alfmultipleobjectsfound": [[4, "one.alf.exceptions.ALFMultipleObjectsFound"]], "alfmultiplerevisionsfound": [[4, "one.alf.exceptions.ALFMultipleRevisionsFound"]], "alfobjectnotfound": [[4, "one.alf.exceptions.ALFObjectNotFound"]], "alyxsubjectnotfound": [[4, "one.alf.exceptions.AlyxSubjectNotFound"]], "explanation (alferror attribute)": [[4, "id0"], [4, "one.alf.exceptions.ALFError.explanation"]], "explanation (alfmultiplecollectionsfound attribute)": [[4, "one.alf.exceptions.ALFMultipleCollectionsFound.explanation"]], "explanation (alfmultipleobjectsfound attribute)": [[4, "one.alf.exceptions.ALFMultipleObjectsFound.explanation"]], "explanation (alfmultiplerevisionsfound attribute)": [[4, "one.alf.exceptions.ALFMultipleRevisionsFound.explanation"]], "explanation (alfobjectnotfound attribute)": [[4, "one.alf.exceptions.ALFObjectNotFound.explanation"]], "explanation (alyxsubjectnotfound attribute)": [[4, "one.alf.exceptions.AlyxSubjectNotFound.explanation"]], "one.alf.exceptions": [[4, "module-one.alf.exceptions"]], "add_uuid_string() (in module one.alf.files)": [[5, "one.alf.files.add_uuid_string"]], "filename_parts() (in module one.alf.files)": [[5, "one.alf.files.filename_parts"]], "folder_parts() (in module one.alf.files)": [[5, "one.alf.files.folder_parts"]], "full_path_parts() (in module one.alf.files)": [[5, "one.alf.files.full_path_parts"]], "get_alf_path() (in module one.alf.files)": [[5, "one.alf.files.get_alf_path"]], "get_session_path() (in module one.alf.files)": [[5, "one.alf.files.get_session_path"]], "one.alf.files": [[5, "module-one.alf.files"]], "padded_sequence() (in module one.alf.files)": [[5, "one.alf.files.padded_sequence"]], "rel_path_parts() (in module one.alf.files)": [[5, "one.alf.files.rel_path_parts"]], "remove_uuid_string() (in module one.alf.files)": [[5, "one.alf.files.remove_uuid_string"]], "session_path_parts() (in module one.alf.files)": [[5, "one.alf.files.session_path_parts"]], "alfbunch (class in one.alf.io)": [[6, "one.alf.io.AlfBunch"]], "append() (alfbunch method)": [[6, "one.alf.io.AlfBunch.append"]], "check_dimensions (alfbunch property)": [[6, "one.alf.io.AlfBunch.check_dimensions"]], "check_dimensions() (in module one.alf.io)": [[6, "one.alf.io.check_dimensions"]], "dataframe() (in module one.alf.io)": [[6, "one.alf.io.dataframe"]], "exists() (in module one.alf.io)": [[6, "one.alf.io.exists"]], "filter_by() (in module one.alf.io)": [[6, "one.alf.io.filter_by"]], "from_df() (alfbunch static method)": [[6, "one.alf.io.AlfBunch.from_df"]], "iter_datasets() (in module one.alf.io)": [[6, "one.alf.io.iter_datasets"]], "iter_sessions() (in module one.alf.io)": [[6, "one.alf.io.iter_sessions"]], "load_file_content() (in module one.alf.io)": [[6, "one.alf.io.load_file_content"]], "load_object() (in module one.alf.io)": [[6, "one.alf.io.load_object"]], "next_num_folder() (in module one.alf.io)": [[6, "one.alf.io.next_num_folder"]], "one.alf.io": [[6, "module-one.alf.io"]], "read_ts() (in module one.alf.io)": [[6, "one.alf.io.read_ts"]], "remove_empty_folders() (in module one.alf.io)": [[6, "one.alf.io.remove_empty_folders"]], "remove_uuid_file() (in module one.alf.io)": [[6, "one.alf.io.remove_uuid_file"]], "remove_uuid_recursive() (in module one.alf.io)": [[6, "one.alf.io.remove_uuid_recursive"]], "save_metadata() (in module one.alf.io)": [[6, "one.alf.io.save_metadata"]], "save_object_npy() (in module one.alf.io)": [[6, "one.alf.io.save_object_npy"]], "to_df() (alfbunch method)": [[6, "one.alf.io.AlfBunch.to_df"]], "ts2vec() (in module one.alf.io)": [[6, "one.alf.io.ts2vec"]], "collection_spec (in module one.alf.spec)": [[7, "one.alf.spec.COLLECTION_SPEC"], [8, "one.alf.spec.COLLECTION_SPEC"]], "file_spec (in module one.alf.spec)": [[7, "one.alf.spec.FILE_SPEC"], [9, "one.alf.spec.FILE_SPEC"]], "full_spec (in module one.alf.spec)": [[7, "one.alf.spec.FULL_SPEC"], [10, "one.alf.spec.FULL_SPEC"]], "rel_path_spec (in module one.alf.spec)": [[7, "one.alf.spec.REL_PATH_SPEC"], [11, "one.alf.spec.REL_PATH_SPEC"]], "session_spec (in module one.alf.spec)": [[7, "one.alf.spec.SESSION_SPEC"], [12, "one.alf.spec.SESSION_SPEC"]], "spec_description (in module one.alf.spec)": [[7, "one.alf.spec.SPEC_DESCRIPTION"], [13, "one.alf.spec.SPEC_DESCRIPTION"]], "describe() (in module one.alf.spec)": [[7, "one.alf.spec.describe"]], "is_session_path() (in module one.alf.spec)": [[7, "one.alf.spec.is_session_path"]], "is_uuid() (in module one.alf.spec)": [[7, "one.alf.spec.is_uuid"]], "is_uuid_string() (in module one.alf.spec)": [[7, "one.alf.spec.is_uuid_string"]], "is_valid() (in module one.alf.spec)": [[7, "one.alf.spec.is_valid"]], "one.alf.spec": [[7, "module-one.alf.spec"]], "path_pattern() (in module one.alf.spec)": [[7, "one.alf.spec.path_pattern"]], "readablealf() (in module one.alf.spec)": [[7, "one.alf.spec.readableALF"]], "regex() (in module one.alf.spec)": [[7, "one.alf.spec.regex"]], "to_alf() (in module one.alf.spec)": [[7, "one.alf.spec.to_alf"]], "one() (in module one.api)": [[14, "one.api.ONE"]], "one (class in one.api)": [[14, "one.api.One"]], "onealyx (class in one.api)": [[14, "one.api.OneAlyx"]], "alyx (onealyx property)": [[14, "one.api.OneAlyx.alyx"]], "cache_dir (onealyx property)": [[14, "one.api.OneAlyx.cache_dir"]], "dataset2type() (onealyx method)": [[14, "one.api.OneAlyx.dataset2type"]], "describe_dataset() (onealyx method)": [[14, "one.api.OneAlyx.describe_dataset"]], "describe_revision() (onealyx method)": [[14, "one.api.OneAlyx.describe_revision"]], "eid2path() (onealyx method)": [[14, "one.api.OneAlyx.eid2path"]], "eid2pid() (onealyx method)": [[14, "one.api.OneAlyx.eid2pid"]], "get_details() (one method)": [[14, "one.api.One.get_details"]], "get_details() (onealyx method)": [[14, "one.api.OneAlyx.get_details"]], "list_aggregates() (onealyx method)": [[14, "one.api.OneAlyx.list_aggregates"]], "list_collections() (one method)": [[14, "one.api.One.list_collections"]], "list_datasets() (one method)": [[14, "one.api.One.list_datasets"]], "list_datasets() (onealyx method)": [[14, "one.api.OneAlyx.list_datasets"]], "list_revisions() (one method)": [[14, "one.api.One.list_revisions"]], "list_subjects() (one method)": [[14, "one.api.One.list_subjects"]], "load_aggregate() (onealyx method)": [[14, "one.api.OneAlyx.load_aggregate"]], "load_cache() (one method)": [[14, "one.api.One.load_cache"]], "load_cache() (onealyx method)": [[14, "one.api.OneAlyx.load_cache"]], "load_collection() (one method)": [[14, "one.api.One.load_collection"]], "load_dataset() (one method)": [[14, "one.api.One.load_dataset"]], "load_dataset_from_id() (one method)": [[14, "one.api.One.load_dataset_from_id"]], "load_datasets() (one method)": [[14, "one.api.One.load_datasets"]], "load_object() (one method)": [[14, "one.api.One.load_object"]], "offline (one property)": [[14, "one.api.One.offline"]], "one.api": [[14, "module-one.api"]], "path2eid() (onealyx method)": [[14, "one.api.OneAlyx.path2eid"]], "path2url() (onealyx method)": [[14, "one.api.OneAlyx.path2url"]], "pid2eid() (onealyx method)": [[14, "one.api.OneAlyx.pid2eid"]], "refresh_cache() (one method)": [[14, "one.api.One.refresh_cache"]], "save_cache() (one method)": [[14, "one.api.One.save_cache"]], "save_loaded_ids() (one method)": [[14, "one.api.One.save_loaded_ids"]], "search() (one method)": [[14, "one.api.One.search"]], "search() (onealyx method)": [[14, "one.api.OneAlyx.search"]], "search_insertions() (onealyx method)": [[14, "one.api.OneAlyx.search_insertions"]], "search_terms() (one method)": [[14, "one.api.One.search_terms"]], "search_terms() (onealyx method)": [[14, "one.api.OneAlyx.search_terms"]], "setup() (one static method)": [[14, "one.api.One.setup"]], "setup() (onealyx static method)": [[14, "one.api.OneAlyx.setup"]], "type2datasets() (onealyx method)": [[14, "one.api.OneAlyx.type2datasets"]], "uuid_filenames (one attribute)": [[14, "one.api.One.uuid_filenames"]], "conversionmixin (class in one.converters)": [[15, "one.converters.ConversionMixin"]], "dict2ref() (conversionmixin static method)": [[15, "one.converters.ConversionMixin.dict2ref"]], "eid2path() (conversionmixin method)": [[15, "one.converters.ConversionMixin.eid2path"]], "eid2ref() (conversionmixin method)": [[15, "one.converters.ConversionMixin.eid2ref"]], "is_exp_ref() (conversionmixin static method)": [[15, "one.converters.ConversionMixin.is_exp_ref"]], "one.converters": [[15, "module-one.converters"]], "one_path_from_dataset() (in module one.converters)": [[15, "one.converters.one_path_from_dataset"]], "parse_values() (in module one.converters)": [[15, "one.converters.parse_values"]], "path2eid() (conversionmixin method)": [[15, "one.converters.ConversionMixin.path2eid"]], "path2record() (conversionmixin method)": [[15, "one.converters.ConversionMixin.path2record"]], "path2ref() (conversionmixin static method)": [[15, "one.converters.ConversionMixin.path2ref"]], "path2url() (conversionmixin method)": [[15, "one.converters.ConversionMixin.path2url"]], "path_from_dataset() (in module one.converters)": [[15, "one.converters.path_from_dataset"]], "path_from_filerecord() (in module one.converters)": [[15, "one.converters.path_from_filerecord"]], "record2path() (conversionmixin method)": [[15, "one.converters.ConversionMixin.record2path"]], "record2url() (conversionmixin method)": [[15, "one.converters.ConversionMixin.record2url"]], "recurse() (in module one.converters)": [[15, "one.converters.recurse"]], "ref2dict() (conversionmixin static method)": [[15, "one.converters.ConversionMixin.ref2dict"]], "ref2eid() (conversionmixin method)": [[15, "one.converters.ConversionMixin.ref2eid"]], "ref2path() (conversionmixin method)": [[15, "one.converters.ConversionMixin.ref2path"]], "session_record2path() (in module one.converters)": [[15, "one.converters.session_record2path"]], "to_eid() (conversionmixin method)": [[15, "one.converters.ConversionMixin.to_eid"]], "cache_dir_default (in module one.params)": [[16, "one.params.CACHE_DIR_DEFAULT"], [17, "one.params.CACHE_DIR_DEFAULT"]], "check_cache_conflict() (in module one.params)": [[16, "one.params.check_cache_conflict"]], "default() (in module one.params)": [[16, "one.params.default"]], "get() (in module one.params)": [[16, "one.params.get"]], "get_cache_dir() (in module one.params)": [[16, "one.params.get_cache_dir"]], "get_default_client() (in module one.params)": [[16, "one.params.get_default_client"]], "get_params_dir() (in module one.params)": [[16, "one.params.get_params_dir"]], "one.params": [[16, "module-one.params"]], "save() (in module one.params)": [[16, "one.params.save"]], "setup() (in module one.params)": [[16, "one.params.setup"]], "registrationclient (class in one.registration)": [[18, "one.registration.RegistrationClient"]], "assert_exists() (registrationclient method)": [[18, "one.registration.RegistrationClient.assert_exists"]], "create_new_session() (registrationclient method)": [[18, "one.registration.RegistrationClient.create_new_session"]], "create_sessions() (registrationclient method)": [[18, "one.registration.RegistrationClient.create_sessions"]], "ensure_iso8601() (registrationclient static method)": [[18, "one.registration.RegistrationClient.ensure_ISO8601"]], "find_files() (registrationclient method)": [[18, "one.registration.RegistrationClient.find_files"]], "get_dataset_type() (in module one.registration)": [[18, "one.registration.get_dataset_type"]], "one.registration": [[18, "module-one.registration"]], "register_files() (registrationclient method)": [[18, "one.registration.RegistrationClient.register_files"]], "register_session() (registrationclient method)": [[18, "one.registration.RegistrationClient.register_session"]], "register_water_administration() (registrationclient method)": [[18, "one.registration.RegistrationClient.register_water_administration"]], "register_weight() (registrationclient method)": [[18, "one.registration.RegistrationClient.register_weight"]], "one.remote": [[19, "module-one.remote"]], "get_aws_access_keys() (in module one.remote.aws)": [[20, "one.remote.aws.get_aws_access_keys"]], "get_s3_from_alyx() (in module one.remote.aws)": [[20, "one.remote.aws.get_s3_from_alyx"]], "get_s3_public() (in module one.remote.aws)": [[20, "one.remote.aws.get_s3_public"]], "get_s3_virtual_host() (in module one.remote.aws)": [[20, "one.remote.aws.get_s3_virtual_host"]], "is_folder() (in module one.remote.aws)": [[20, "one.remote.aws.is_folder"]], "one.remote.aws": [[20, "module-one.remote.aws"]], "s3_download_file() (in module one.remote.aws)": [[20, "one.remote.aws.s3_download_file"]], "s3_download_folder() (in module one.remote.aws)": [[20, "one.remote.aws.s3_download_folder"]], "url2uri() (in module one.remote.aws)": [[20, "one.remote.aws.url2uri"]], 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"one.tests.test_registration.TestRegistrationClient.test_find_files"]], "test_get_dataset_type() (testdatasettypes method)": [[42, "one.tests.test_registration.TestDatasetTypes.test_get_dataset_type"]], "test_instantiation() (testregistrationclient method)": [[42, "one.tests.test_registration.TestRegistrationClient.test_instantiation"]], "test_next_revision() (testregistrationclient method)": [[42, "one.tests.test_registration.TestRegistrationClient.test_next_revision"]], "test_register_files() (testregistrationclient method)": [[42, "one.tests.test_registration.TestRegistrationClient.test_register_files"]], "test_register_session() (testregistrationclient method)": [[42, "one.tests.test_registration.TestRegistrationClient.test_register_session"]], "test_register_weight() (testregistrationclient method)": [[42, "one.tests.test_registration.TestRegistrationClient.test_register_weight"]], "test_water_administration() (testregistrationclient method)": [[42, "one.tests.test_registration.TestRegistrationClient.test_water_administration"]], "caches_str2int() (in module one.tests.util)": [[43, "one.tests.util.caches_str2int"]], "create_file_tree() (in module one.tests.util)": [[43, "one.tests.util.create_file_tree"]], "create_schema_cache() (in module one.tests.util)": [[43, "one.tests.util.create_schema_cache"]], "get_file() (in module one.tests.util)": [[43, "one.tests.util.get_file"]], "one.tests.util": [[43, "module-one.tests.util"]], "revisions_datasets_table() (in module one.tests.util)": [[43, "one.tests.util.revisions_datasets_table"]], "set_up_env() (in module one.tests.util)": [[43, "one.tests.util.set_up_env"]], "setup_rest_cache() (in module one.tests.util)": [[43, "one.tests.util.setup_rest_cache"]], "setup_test_params() (in module one.tests.util)": [[43, "one.tests.util.setup_test_params"]], "lazyid (class in one.util)": [[44, "one.util.LazyId"]], "listable() (in module one.util)": [[44, "one.util.Listable"]], "autocomplete() (in module one.util)": [[44, "one.util.autocomplete"]], "cache_int2str() (in module one.util)": [[44, "one.util.cache_int2str"]], "datasets2records() (in module one.util)": [[44, "one.util.datasets2records"]], "ensure_list() (in module one.util)": [[44, "one.util.ensure_list"]], "filter_datasets() (in module one.util)": [[44, "one.util.filter_datasets"]], "filter_revision_last_before() (in module one.util)": [[44, "one.util.filter_revision_last_before"]], "index_last_before() (in module one.util)": [[44, "one.util.index_last_before"]], "one.util": [[44, "module-one.util"]], "parse_id() (in module one.util)": [[44, "one.util.parse_id"]], "patch_cache() (in module one.util)": [[44, "one.util.patch_cache"]], "refresh() (in module one.util)": [[44, "one.util.refresh"]], "ses2eid() (lazyid static method)": [[44, "one.util.LazyId.ses2eid"]], "ses2records() (in module one.util)": [[44, "one.util.ses2records"]], "validate_date_range() (in module one.util)": [[44, "one.util.validate_date_range"]], "alyxclient (class in one.webclient)": [[45, "one.webclient.AlyxClient"]], "authenticate() (alyxclient method)": [[45, "one.webclient.AlyxClient.authenticate"]], "base_url (alyxclient attribute)": [[45, "one.webclient.AlyxClient.base_url"]], "cache_dir (alyxclient property)": [[45, "one.webclient.AlyxClient.cache_dir"]], "clear_rest_cache() (alyxclient method)": [[45, "one.webclient.AlyxClient.clear_rest_cache"]], "dataset_record_to_url() (in module one.webclient)": [[45, "one.webclient.dataset_record_to_url"]], "delete() (alyxclient method)": [[45, "one.webclient.AlyxClient.delete"]], "download_cache_tables() (alyxclient method)": [[45, "one.webclient.AlyxClient.download_cache_tables"]], "download_file() (alyxclient method)": [[45, "one.webclient.AlyxClient.download_file"]], "file_record_to_url() (in module one.webclient)": [[45, "one.webclient.file_record_to_url"]], "get() (alyxclient method)": [[45, "one.webclient.AlyxClient.get"]], "http_download_file() (in module one.webclient)": [[45, "one.webclient.http_download_file"]], "http_download_file_list() (in module one.webclient)": [[45, "one.webclient.http_download_file_list"]], "is_logged_in (alyxclient property)": [[45, "one.webclient.AlyxClient.is_logged_in"]], "json_field_delete() (alyxclient method)": [[45, "one.webclient.AlyxClient.json_field_delete"]], "json_field_remove_key() (alyxclient method)": [[45, "one.webclient.AlyxClient.json_field_remove_key"]], "json_field_update() (alyxclient method)": [[45, "one.webclient.AlyxClient.json_field_update"]], "json_field_write() (alyxclient method)": [[45, "one.webclient.AlyxClient.json_field_write"]], "list_endpoints() (alyxclient method)": [[45, "one.webclient.AlyxClient.list_endpoints"]], "logout() (alyxclient method)": [[45, "one.webclient.AlyxClient.logout"]], "no_cache() (in module one.webclient)": [[45, "one.webclient.no_cache"]], "one.webclient": [[45, "module-one.webclient"]], "patch() (alyxclient method)": [[45, "one.webclient.AlyxClient.patch"]], "post() (alyxclient method)": [[45, "one.webclient.AlyxClient.post"]], "print_endpoint_info() (alyxclient method)": [[45, "one.webclient.AlyxClient.print_endpoint_info"]], "put() (alyxclient method)": [[45, "one.webclient.AlyxClient.put"]], "rel_path2url() (alyxclient method)": [[45, "one.webclient.AlyxClient.rel_path2url"]], "rest() (alyxclient method)": [[45, "one.webclient.AlyxClient.rest"]], "rest_schemes (alyxclient property)": [[45, "one.webclient.AlyxClient.rest_schemes"]], "update_url_params() (in module one.webclient)": [[45, "one.webclient.update_url_params"]], "user (alyxclient attribute)": [[45, "one.webclient.AlyxClient.user"]]}})
\ No newline at end of file