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index cb59ad9f..2ee20718 100644
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index bbd9f6ff..cd499b33 100644
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index 91019aa8..bd22b7c5 100644
--- a/main/LICENSE-text.html
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@@ -10,7 +10,7 @@
     
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index c530ba9b..81bdc2fd 100644
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@@ -27,7 +27,7 @@
     
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index 56288f46..68782c3d 100644
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-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
diff --git a/main/articles/teal-transform.html b/main/articles/teal-transform.html
index 5e727fb5..c29bad3b 100644
--- a/main/articles/teal-transform.html
+++ b/main/articles/teal-transform.html
@@ -27,7 +27,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -53,16 +53,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
diff --git a/main/authors.html b/main/authors.html
index a601cb7b..909f868e 100644
--- a/main/authors.html
+++ b/main/authors.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
@@ -114,15 +104,16 @@ <h2 id="citation">Citation</h2>
 
       <p>Kaledkowski D, Rucki P, Hallal M, Burkoff N, Nasinski M, Pagacz K, Zhao J (2023).
 <em>teal.transform: Functions for Extracting and Merging Data in the 'teal' Framework</em>.
-https://insightsengineering.github.io/teal.transform/,
-https://github.com/insightsengineering/teal.transform/. 
+R package version 0.4.0.9006, 
+https://github.com/insightsengineering/teal.transform/, <a href="https://insightsengineering.github.io/teal.transform/">https://insightsengineering.github.io/teal.transform/</a>. 
 </p>
       <pre>@Manual{,
   title = {teal.transform: Functions for Extracting and Merging Data in the 'teal' Framework},
   author = {Dawid Kaledkowski and Pawel Rucki and Mahmoud Hallal and Nikolas Burkoff and Maciej Nasinski and Konrad Pagacz and Junlue Zhao},
   year = {2023},
-  note = {https://insightsengineering.github.io/teal.transform/,
+  note = {R package version 0.4.0.9006, 
 https://github.com/insightsengineering/teal.transform/},
+  url = {https://insightsengineering.github.io/teal.transform/},
 }</pre>
     </div>
   </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
diff --git a/main/index.html b/main/index.html
index 35c1d8dc..d6fe9b9b 100644
--- a/main/index.html
+++ b/main/index.html
@@ -5,14 +5,16 @@
 <meta charset="utf-8">
 <meta http-equiv="X-UA-Compatible" content="IE=edge">
 <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
-<meta name="description" content="A standardized user interface for column selection, that facilitates dataset merging in teal framework.">
+<meta name="description" content="A standardized user interface for column selection, that
+    facilitates dataset merging in teal framework.">
 <title>Functions for Extracting and Merging Data in the teal Framework • teal.transform</title>
 <script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
 <link href="deps/bootstrap-5.2.2/bootstrap.min.css" rel="stylesheet">
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 <!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="pkgdown.js"></script><meta property="og:title" content="Functions for Extracting and Merging Data in the teal Framework">
-<meta property="og:description" content="A standardized user interface for column selection, that facilitates dataset merging in teal framework.">
+<meta property="og:description" content="A standardized user interface for column selection, that
+    facilitates dataset merging in teal framework.">
 <!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
 <script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
 <script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
@@ -27,7 +29,7 @@
     
     <a class="navbar-brand me-2" href="index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -53,16 +55,6 @@
 <li class="nav-item">
   <a class="nav-link" href="news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
diff --git a/main/news/index.html b/main/news/index.html
index 6b7f162c..97c729fb 100644
--- a/main/news/index.html
+++ b/main/news/index.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="active nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
@@ -73,9 +63,9 @@
     </div>
 
     <div class="section level2">
-<h2 class="pkg-version" data-toc-text="0.4.0.9003" id="tealtransform-0409003">teal.transform 0.4.0.9003<a class="anchor" aria-label="anchor" href="#tealtransform-0409003"></a></h2>
+<h2 class="pkg-version" data-toc-text="0.4.0.9006" id="tealtransform-0409006">teal.transform 0.4.0.9006<a class="anchor" aria-label="anchor" href="#tealtransform-0409006"></a></h2>
 <div class="section level4">
-<h4 id="miscellaneous-0-4-0-9003">Miscellaneous<a class="anchor" aria-label="anchor" href="#miscellaneous-0-4-0-9003"></a></h4>
+<h4 id="miscellaneous-0-4-0-9006">Miscellaneous<a class="anchor" aria-label="anchor" href="#miscellaneous-0-4-0-9006"></a></h4>
 <ul><li>Specified minimal version of package dependencies.</li>
 </ul></div>
 </div>
@@ -126,7 +116,7 @@ <h4 id="new-features-0-2-0">New features<a class="anchor" aria-label="anchor" hr
 </ul></div>
 <div class="section level4">
 <h4 id="enhancements-0-2-0">Enhancements<a class="anchor" aria-label="anchor" href="#enhancements-0-2-0"></a></h4>
-<ul><li>Updated the examples and the tests to use <code><a href="https://rdrr.io/pkg/teal.slice/man/init_filtered_data.html" class="external-link">teal.slice::init_filtered_data</a></code> to initialize a <code>FilteredData</code> object.</li>
+<ul><li>Updated the examples and the tests to use <code><a href="https://insightsengineering.github.io/teal.slice/reference/init_filtered_data.html" class="external-link">teal.slice::init_filtered_data</a></code> to initialize a <code>FilteredData</code> object.</li>
 <li>Updated the vignettes and the <code>README</code> content.</li>
 <li>Updated <code>data_merge_module</code> and <code>merge_expression_module</code> to accept <code>NULL</code> <code>data_extract</code> inputs.</li>
 </ul></div>
diff --git a/main/pkgdown.yml b/main/pkgdown.yml
index 1e5bfa82..33a9e72e 100644
--- a/main/pkgdown.yml
+++ b/main/pkgdown.yml
@@ -6,7 +6,7 @@ articles:
   data-extract: data-extract.html
   data-merge: data-merge.html
   teal-transform: teal-transform.html
-last_built: 2023-09-19T18:56Z
+last_built: 2023-11-20T10:38Z
 urls:
   reference: https://insightsengineering.github.io/teal.transform/reference
   article: https://insightsengineering.github.io/teal.transform/articles
diff --git a/main/pull_request_template.html b/main/pull_request_template.html
index acd17f87..959691cf 100644
--- a/main/pull_request_template.html
+++ b/main/pull_request_template.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
diff --git a/main/reference/Queue.html b/main/reference/Queue.html
index 04288c57..d43971ab 100644
--- a/main/reference/Queue.html
+++ b/main/reference/Queue.html
@@ -18,7 +18,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -43,16 +43,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
diff --git a/main/reference/add_no_selected_choices.html b/main/reference/add_no_selected_choices.html
index c9e227f9..4cd66aa4 100644
--- a/main/reference/add_no_selected_choices.html
+++ b/main/reference/add_no_selected_choices.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
diff --git a/main/reference/all_choices.html b/main/reference/all_choices.html
index 827dd6ba..1cc4e8f8 100644
--- a/main/reference/all_choices.html
+++ b/main/reference/all_choices.html
@@ -12,7 +12,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -37,16 +37,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
diff --git a/main/reference/are_needed_keys_provided.html b/main/reference/are_needed_keys_provided.html
index ffbf7ede..a7cf733f 100644
--- a/main/reference/are_needed_keys_provided.html
+++ b/main/reference/are_needed_keys_provided.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
@@ -85,7 +75,7 @@ <h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage">
     <div class="section level2">
     <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
     <dl><dt>join_keys</dt>
-<dd><p>(<code>JoinKeys</code>) the provided join keys</p></dd>
+<dd><p>(<code>join_keys</code>) the provided join keys</p></dd>
 
 
 <dt>merged_selector_list</dt>
diff --git a/main/reference/call_check_parse_varname.html b/main/reference/call_check_parse_varname.html
index 9acce6a0..881e9992 100644
--- a/main/reference/call_check_parse_varname.html
+++ b/main/reference/call_check_parse_varname.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
diff --git a/main/reference/call_condition_choice.html b/main/reference/call_condition_choice.html
index 2c95c93d..ce22d6fc 100644
--- a/main/reference/call_condition_choice.html
+++ b/main/reference/call_condition_choice.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
@@ -122,9 +112,9 @@ <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-e
 <span class="r-in"><span><span class="fu">teal.transform</span><span class="fu">:::</span><span class="fu">call_condition_choice</span><span class="op">(</span><span class="st">"SEX"</span>, choices <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/factor.html" class="external-link">factor</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"F"</span>, <span class="st">"M"</span><span class="op">)</span><span class="op">)</span><span class="op">)</span></span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> SEX %in% c("F", "M")</span>
 <span class="r-in"><span><span class="fu">teal.transform</span><span class="fu">:::</span><span class="fu">call_condition_choice</span><span class="op">(</span><span class="st">"x$SEX"</span>, choices <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/Sys.time.html" class="external-link">Sys.Date</a></span><span class="op">(</span><span class="op">)</span><span class="op">)</span></span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> x$SEX == "2023-09-19"</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> x$SEX == "2023-11-20"</span>
 <span class="r-in"><span><span class="fu">teal.transform</span><span class="fu">:::</span><span class="fu">call_condition_choice</span><span class="op">(</span><span class="st">"trunc(x$SEX)"</span>, choices <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/Sys.time.html" class="external-link">Sys.time</a></span><span class="op">(</span><span class="op">)</span><span class="op">)</span></span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> trunc(x$SEX) == "2023-09-19 18:56:31"</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> trunc(x$SEX) == "2023-11-20 10:38:32"</span>
 </code></pre></div>
     </div>
   </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
diff --git a/main/reference/call_condition_logical.html b/main/reference/call_condition_logical.html
index 8acc51cc..ff082592 100644
--- a/main/reference/call_condition_logical.html
+++ b/main/reference/call_condition_logical.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
diff --git a/main/reference/call_condition_range.html b/main/reference/call_condition_range.html
index f7eb6b4c..25eebd08 100644
--- a/main/reference/call_condition_range.html
+++ b/main/reference/call_condition_range.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
diff --git a/main/reference/call_condition_range_date.html b/main/reference/call_condition_range_date.html
index 8a2e2d5d..9634ee6a 100644
--- a/main/reference/call_condition_range_date.html
+++ b/main/reference/call_condition_range_date.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
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-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
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-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
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   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
@@ -109,7 +99,7 @@ <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-e
 <span class="r-in"><span>  <span class="fu"><a href="https://rdrr.io/r/base/name.html" class="external-link">as.name</a></span><span class="op">(</span><span class="st">"date"</span><span class="op">)</span>,</span></span>
 <span class="r-in"><span>  range <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/Sys.time.html" class="external-link">Sys.Date</a></span><span class="op">(</span><span class="op">)</span>, <span class="fu"><a href="https://rdrr.io/r/base/Sys.time.html" class="external-link">Sys.Date</a></span><span class="op">(</span><span class="op">)</span> <span class="op">+</span> <span class="fl">1</span><span class="op">)</span></span></span>
 <span class="r-in"><span><span class="op">)</span></span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> date &gt;= as.Date("2023-09-19") &amp; date &lt;= as.Date("2023-09-20")</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> date &gt;= as.Date("2023-11-20") &amp; date &lt;= as.Date("2023-11-21")</span>
 </code></pre></div>
     </div>
   </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
diff --git a/main/reference/call_condition_range_posixct.html b/main/reference/call_condition_range_posixct.html
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
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@@ -118,8 +108,8 @@ <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-e
 <span class="r-in"><span>  range <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/Sys.time.html" class="external-link">Sys.time</a></span><span class="op">(</span><span class="op">)</span>, <span class="fu"><a href="https://rdrr.io/r/base/Sys.time.html" class="external-link">Sys.time</a></span><span class="op">(</span><span class="op">)</span> <span class="op">+</span> <span class="fl">1</span><span class="op">)</span>,</span></span>
 <span class="r-in"><span>  timezone <span class="op">=</span> <span class="st">"UTC"</span></span></span>
 <span class="r-in"><span><span class="op">)</span></span></span>
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-<span class="r-out co"><span class="r-pr">#&gt;</span>     as.POSIXct("2023-09-19 18:56:34", tz = "UTC")</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> datetime &gt;= as.POSIXct("2023-11-20 10:38:33", tz = "UTC") &amp; datetime &lt; </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>     as.POSIXct("2023-11-20 10:38:35", tz = "UTC")</span>
 </code></pre></div>
     </div>
   </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
diff --git a/main/reference/call_extract_array.html b/main/reference/call_extract_array.html
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     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
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diff --git a/main/reference/call_extract_list.html b/main/reference/call_extract_list.html
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     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
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-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
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diff --git a/main/reference/call_extract_matrix.html b/main/reference/call_extract_matrix.html
index 76a2a901..2d1cd373 100644
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
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-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
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-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
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diff --git a/main/reference/call_with_colon.html b/main/reference/call_with_colon.html
index fe615075..58ed011f 100644
--- a/main/reference/call_with_colon.html
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@@ -10,7 +10,7 @@
     
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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@@ -35,16 +35,6 @@
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 </li>
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-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
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-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
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diff --git a/main/reference/calls_combine_by.html b/main/reference/calls_combine_by.html
index c6eaf2ed..ddfe8619 100644
--- a/main/reference/calls_combine_by.html
+++ b/main/reference/calls_combine_by.html
@@ -10,7 +10,7 @@
     
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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@@ -35,16 +35,6 @@
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   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
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diff --git a/main/reference/check_data_extract_spec_react.html b/main/reference/check_data_extract_spec_react.html
index 9c98c276..6a757618 100644
--- a/main/reference/check_data_extract_spec_react.html
+++ b/main/reference/check_data_extract_spec_react.html
@@ -14,7 +14,7 @@
     
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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@@ -39,16 +39,6 @@
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 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
diff --git a/main/reference/check_data_merge_selectors.html b/main/reference/check_data_merge_selectors.html
index e3799b74..13f8c1c2 100644
--- a/main/reference/check_data_merge_selectors.html
+++ b/main/reference/check_data_merge_selectors.html
@@ -12,7 +12,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -37,16 +37,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
diff --git a/main/reference/check_no_multiple_selection.html b/main/reference/check_no_multiple_selection.html
index 2190635a..e65737d1 100644
--- a/main/reference/check_no_multiple_selection.html
+++ b/main/reference/check_no_multiple_selection.html
@@ -12,7 +12,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -37,16 +37,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
diff --git a/main/reference/choices_labeled.html b/main/reference/choices_labeled.html
index 79b70633..01314dd4 100644
--- a/main/reference/choices_labeled.html
+++ b/main/reference/choices_labeled.html
@@ -16,7 +16,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -41,16 +41,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
diff --git a/main/reference/choices_selected.html b/main/reference/choices_selected.html
index 0ccc11ef..cfad218a 100644
--- a/main/reference/choices_selected.html
+++ b/main/reference/choices_selected.html
@@ -20,7 +20,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -45,16 +45,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
@@ -416,7 +406,7 @@ <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-e
 <span class="r-out co"><span class="r-pr">#&gt;</span>   idx &lt;- vapply(data, is.factor, logical(1))</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   return(names(data)[idx])</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;environment: 0x556c04669530&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;environment: 0x563aa5d87bc0&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   $ key</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   NULL</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> $ selected</span>
diff --git a/main/reference/compose_and_enable_validators.html b/main/reference/compose_and_enable_validators.html
index 248b00b2..9ef70d43 100644
--- a/main/reference/compose_and_enable_validators.html
+++ b/main/reference/compose_and_enable_validators.html
@@ -14,7 +14,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -39,16 +39,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
@@ -206,7 +196,7 @@ <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-e
 <span class="r-in"><span>  <span class="op">}</span></span></span>
 <span class="r-in"><span><span class="op">)</span></span></span>
 <span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/interactive.html" class="external-link">interactive</a></span><span class="op">(</span><span class="op">)</span><span class="op">)</span> <span class="op">{</span></span></span>
-<span class="r-in"><span>  <span class="fu"><a href="https://rdrr.io/pkg/shiny/man/runApp.html" class="external-link">runApp</a></span><span class="op">(</span><span class="va">app</span><span class="op">)</span></span></span>
+<span class="r-in"><span>  <span class="fu"><a href="https://rdrr.io/pkg/shiny/man/shinyApp.html" class="external-link">shinyApp</a></span><span class="op">(</span><span class="va">app</span><span class="op">$</span><span class="va">ui</span>, <span class="va">app</span><span class="op">$</span><span class="va">server</span><span class="op">)</span></span></span>
 <span class="r-in"><span><span class="op">}</span></span></span>
 </code></pre></div>
     </div>
diff --git a/main/reference/cond_data_extract_single_ui.html b/main/reference/cond_data_extract_single_ui.html
index 09637ecb..01212f91 100644
--- a/main/reference/cond_data_extract_single_ui.html
+++ b/main/reference/cond_data_extract_single_ui.html
@@ -14,7 +14,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -39,16 +39,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
@@ -117,23 +107,74 @@ <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-e
 <span class="r-out co"><span class="r-pr">#&gt;</span>   &lt;div&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;div&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;div class="filter_spec"&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;div class="form-group shiny-input-container"&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;label class="control-label" for="TEST-dataset_test_singleextract-filter1-col"&gt;Filter by&lt;/label&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;select data-actions-box="false" data-none-selected-text="- Nothing selected -" data-max-options="1" data-show-subtext="true" data-live-search="false" id="TEST-dataset_test_singleextract-filter1-col" class="selectpicker form-control" multiple="multiple"&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>             &lt;option value="test" data-content="test"&gt;test&lt;/option&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;/select&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;script&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         $(function() {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           $('#TEST-dataset_test_singleextract-filter1-col').on('change', function(e) {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             var select_concat = $(this).val().length ? $(this).val().join(', ') : 'NULL';</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             $('#TEST-dataset_test_singleextract-filter1-col_selected_text').html(select_concat);</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           })</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         })&lt;/script&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             &lt;div id="TEST-dataset_test_singleextract-filter1-col_input" style="display: block;"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>               &lt;div class="form-group shiny-input-container"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                 &lt;label class="control-label" id="TEST-dataset_test_singleextract-filter1-col-label" for="TEST-dataset_test_singleextract-filter1-col"&gt;Filter by&lt;/label&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                 &lt;select data-actions-box="false" data-none-selected-text="- Nothing selected -" data-max-options="1" data-show-subtext="true" data-live-search="false" data-state-input="true" id="TEST-dataset_test_singleextract-filter1-col" class="selectpicker form-control" multiple="multiple"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                   &lt;option value="test" data-content="test"&gt;test&lt;/option&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                 &lt;/select&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>               &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             &lt;div id="TEST-dataset_test_singleextract-filter1-col_fixed" style="display: none;"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>               &lt;label class="control-label"&gt;Filter by&lt;/label&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>               &lt;code id="TEST-dataset_test_singleextract-filter1-col_selected_text"&gt;NULL&lt;/code&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;/div&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;/div&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;div class="form-group shiny-input-container"&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;label class="control-label shiny-label-null" for="TEST-dataset_test_singleextract-filter1-vals"&gt;&lt;/label&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;select data-actions-box="true" data-none-selected-text="- Nothing selected -" data-max-options="Inf" data-show-subtext="true" data-live-search="false" id="TEST-dataset_test_singleextract-filter1-vals" class="selectpicker form-control" multiple="multiple"&gt;&lt;option value=""&gt;&lt;/option&gt;&lt;/select&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;script&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         $(function() {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           $('#TEST-dataset_test_singleextract-filter1-vals').on('change', function(e) {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             var select_concat = $(this).val().length ? $(this).val().join(', ') : 'NULL';</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             $('#TEST-dataset_test_singleextract-filter1-vals_selected_text').html(select_concat);</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           })</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         })&lt;/script&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             &lt;div id="TEST-dataset_test_singleextract-filter1-vals_input" style="display: block;"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>               &lt;div class="form-group shiny-input-container"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                 &lt;label class="control-label shiny-label-null" for="TEST-dataset_test_singleextract-filter1-vals" id="TEST-dataset_test_singleextract-filter1-vals-label"&gt;&lt;/label&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                 &lt;select data-actions-box="true" data-none-selected-text="- Nothing selected -" data-max-options="Inf" data-show-subtext="true" data-live-search="false" data-state-input="true" id="TEST-dataset_test_singleextract-filter1-vals" class="selectpicker form-control" multiple="multiple"&gt;&lt;option value=""&gt;&lt;/option&gt;&lt;/select&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>               &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             &lt;div id="TEST-dataset_test_singleextract-filter1-vals_fixed" style="display: none;"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>               &lt;label class="control-label"&gt;&lt;/label&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>               &lt;code id="TEST-dataset_test_singleextract-filter1-vals_selected_text"&gt;NULL&lt;/code&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;/div&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;/div&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;/div&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;/div&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;div class="form-group shiny-input-container"&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;label class="control-label" for="TEST-dataset_test_singleextract-select"&gt;Select&lt;/label&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;select data-actions-box="true" data-none-selected-text="- Nothing selected -" data-max-options="Inf" data-show-subtext="true" data-live-search="false" id="TEST-dataset_test_singleextract-select" class="selectpicker form-control" multiple="multiple"&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;option value="test" data-content="test"&gt;test&lt;/option&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;/select&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;script&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         $(function() {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           $('#TEST-dataset_test_singleextract-select').on('change', function(e) {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             var select_concat = $(this).val().length ? $(this).val().join(', ') : 'NULL';</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             $('#TEST-dataset_test_singleextract-select_selected_text').html(select_concat);</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           })</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         })&lt;/script&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;div id="TEST-dataset_test_singleextract-select_input" style="display: block;"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;div class="form-group shiny-input-container"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             &lt;label class="control-label" id="TEST-dataset_test_singleextract-select-label" for="TEST-dataset_test_singleextract-select"&gt;Select&lt;/label&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             &lt;select data-actions-box="true" data-none-selected-text="- Nothing selected -" data-max-options="Inf" data-show-subtext="true" data-live-search="false" data-state-input="true" id="TEST-dataset_test_singleextract-select" class="selectpicker form-control" multiple="multiple"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>               &lt;option value="test" data-content="test"&gt;test&lt;/option&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             &lt;/select&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;div id="TEST-dataset_test_singleextract-select_fixed" style="display: none;"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;label class="control-label"&gt;Select&lt;/label&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;code id="TEST-dataset_test_singleextract-select_selected_text"&gt;NULL&lt;/code&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;/div&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;/div&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;div class="form-group shiny-input-container shinyjs-disabled shinyjs-hide"&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;div class="checkbox"&gt;</span>
diff --git a/main/reference/data_extract_filter_srv.html b/main/reference/data_extract_filter_srv.html
index 2513b89d..8d3e493f 100644
--- a/main/reference/data_extract_filter_srv.html
+++ b/main/reference/data_extract_filter_srv.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
diff --git a/main/reference/data_extract_filter_ui.html b/main/reference/data_extract_filter_ui.html
index d32b3e30..aff91f32 100644
--- a/main/reference/data_extract_filter_ui.html
+++ b/main/reference/data_extract_filter_ui.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
@@ -109,16 +99,46 @@ <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-e
     <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">teal.transform</span><span class="fu">:::</span><span class="fu">data_extract_filter_ui</span><span class="op">(</span>filter <span class="op">=</span> <span class="fu"><a href="filter_spec.html">filter_spec</a></span><span class="op">(</span>vars <span class="op">=</span> <span class="st">"test_var"</span><span class="op">)</span>, id <span class="op">=</span> <span class="st">"test_id"</span><span class="op">)</span></span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> &lt;div class="filter_spec"&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   &lt;div class="shinyjs-hide"&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;div class="form-group shiny-input-container shinyjs-hide"&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;label class="control-label shiny-label-null" for="test_id-col"&gt;&lt;/label&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;select data-actions-box="true" data-none-selected-text="- Nothing selected -" data-max-options="Inf" data-show-subtext="true" data-live-search="false" id="test_id-col" class="selectpicker form-control" multiple="multiple"&gt;&lt;option value="test_var" selected&gt;test_var&lt;/option&gt;&lt;/select&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;script&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         $(function() {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           $('#test_id-col').on('change', function(e) {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             var select_concat = $(this).val().length ? $(this).val().join(', ') : 'NULL';</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             $('#test_id-col_selected_text').html(select_concat);</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           })</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         })&lt;/script&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;div id="test_id-col_input" style="display: none;"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;div class="form-group shiny-input-container"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;label class="control-label shiny-label-null" for="test_id-col" id="test_id-col-label"&gt;&lt;/label&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;select data-actions-box="true" data-none-selected-text="- Nothing selected -" data-max-options="Inf" data-show-subtext="true" data-live-search="false" data-state-input="true" id="test_id-col" class="selectpicker form-control" multiple="multiple"&gt;&lt;option value="test_var" selected&gt;test_var&lt;/option&gt;&lt;/select&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;div id="test_id-col_fixed" style="display: block;"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;label class="control-label"&gt;&lt;/label&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;code id="test_id-col_selected_text"&gt;test_var&lt;/code&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;/div&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;/div&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;label id="test_id-col_textonly" class="control-label"&gt;&lt;/label&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;code id="test_id-col_valueonly"&gt;test_var&lt;/code&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   &lt;/div&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>   &lt;div class="form-group shiny-input-container"&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;label class="control-label" for="test_id-vals"&gt;Filter by&lt;/label&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;select data-actions-box="false" data-none-selected-text="- Nothing selected -" data-max-options="1" data-show-subtext="true" data-live-search="false" id="test_id-vals" class="selectpicker form-control" multiple="multiple"&gt;&lt;option value=""&gt;&lt;/option&gt;&lt;/select&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>   &lt;div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;script&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         $(function() {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           $('#test_id-vals').on('change', function(e) {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             var select_concat = $(this).val().length ? $(this).val().join(', ') : 'NULL';</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             $('#test_id-vals_selected_text').html(select_concat);</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           })</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         })&lt;/script&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;div id="test_id-vals_input" style="display: block;"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;div class="form-group shiny-input-container"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;label class="control-label" id="test_id-vals-label" for="test_id-vals"&gt;Filter by&lt;/label&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;select data-actions-box="false" data-none-selected-text="- Nothing selected -" data-max-options="1" data-show-subtext="true" data-live-search="false" data-state-input="true" id="test_id-vals" class="selectpicker form-control" multiple="multiple"&gt;&lt;option value=""&gt;&lt;/option&gt;&lt;/select&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;div id="test_id-vals_fixed" style="display: none;"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;label class="control-label"&gt;Filter by&lt;/label&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;code id="test_id-vals_selected_text"&gt;NULL&lt;/code&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;/div&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   &lt;/div&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> &lt;/div&gt;</span>
 </code></pre></div>
diff --git a/main/reference/data_extract_multiple_srv.html b/main/reference/data_extract_multiple_srv.html
index 0f499756..1b7a38ab 100644
--- a/main/reference/data_extract_multiple_srv.html
+++ b/main/reference/data_extract_multiple_srv.html
@@ -16,7 +16,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -41,16 +41,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
@@ -121,7 +111,7 @@ <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#argumen
 
 <dt>datasets</dt>
 <dd><p>(<code>FilteredData</code> or <code>list</code> of <code>reactive</code> or non-<code>reactive</code> <code>data.frame</code>)<br>
-object containing data either in the form of <a href="https://rdrr.io/pkg/teal.slice/man/FilteredData.html" class="external-link">teal.slice::FilteredData</a> or as a list of <code>data.frame</code>.
+object containing data either in the form of <a href="https://insightsengineering.github.io/teal.slice/reference/FilteredData.html" class="external-link">teal.slice::FilteredData</a> or as a list of <code>data.frame</code>.
 When passing a list of non-reactive <code>data.frame</code> objects, they are converted to reactive <code>data.frame</code>s internally.
 When passing a list of reactive or non-reactive <code>data.frame</code> objects, the argument <code>join_keys</code> is required also.</p></dd>
 
@@ -132,7 +122,7 @@ <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#argumen
 
 
 <dt>join_keys</dt>
-<dd><p>(<code>JoinKeys</code> or <code>NULL</code>) of join keys per dataset in <code>datasets</code>.</p></dd>
+<dd><p>(<code>join_keys</code> or <code>NULL</code>) of join keys per dataset in <code>datasets</code>.</p></dd>
 
 
 <dt>select_validation_rule</dt>
@@ -251,7 +241,7 @@ <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-e
 <span class="r-in"><span>  <span class="op">}</span></span></span>
 <span class="r-in"><span><span class="op">)</span></span></span>
 <span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/interactive.html" class="external-link">interactive</a></span><span class="op">(</span><span class="op">)</span><span class="op">)</span> <span class="op">{</span></span></span>
-<span class="r-in"><span>  <span class="fu"><a href="https://rdrr.io/pkg/shiny/man/runApp.html" class="external-link">runApp</a></span><span class="op">(</span><span class="va">app</span><span class="op">)</span></span></span>
+<span class="r-in"><span>  <span class="fu"><a href="https://rdrr.io/pkg/shiny/man/shinyApp.html" class="external-link">shinyApp</a></span><span class="op">(</span><span class="va">app</span><span class="op">$</span><span class="va">ui</span>, <span class="va">app</span><span class="op">$</span><span class="va">server</span><span class="op">)</span></span></span>
 <span class="r-in"><span><span class="op">}</span></span></span>
 </code></pre></div>
     </div>
diff --git a/main/reference/data_extract_read_srv.html b/main/reference/data_extract_read_srv.html
index 853e4571..66a18afb 100644
--- a/main/reference/data_extract_read_srv.html
+++ b/main/reference/data_extract_read_srv.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
diff --git a/main/reference/data_extract_select_ui.html b/main/reference/data_extract_select_ui.html
index 861a76c4..d639a560 100644
--- a/main/reference/data_extract_select_ui.html
+++ b/main/reference/data_extract_select_ui.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
@@ -107,9 +97,26 @@ <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-e
 <span class="r-in"><span>  select <span class="op">=</span> <span class="fu"><a href="select_spec.html">select_spec</a></span><span class="op">(</span>choices <span class="op">=</span> <span class="st">"test_choice"</span><span class="op">)</span>,</span></span>
 <span class="r-in"><span>  id <span class="op">=</span> <span class="st">"test_id"</span></span></span>
 <span class="r-in"><span><span class="op">)</span></span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;div class="form-group shiny-input-container"&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>   &lt;label class="control-label" for="test_id"&gt;Select&lt;/label&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>   &lt;select data-actions-box="false" data-none-selected-text="- Nothing selected -" data-max-options="1" data-show-subtext="true" data-live-search="false" id="test_id" class="selectpicker form-control" multiple="multiple"&gt;&lt;option value="test_choice" selected&gt;test_choice&lt;/option&gt;&lt;/select&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>   &lt;script&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         $(function() {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           $('#test_id').on('change', function(e) {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             var select_concat = $(this).val().length ? $(this).val().join(', ') : 'NULL';</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             $('#test_id_selected_text').html(select_concat);</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           })</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         })&lt;/script&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>   &lt;div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;div id="test_id_input" style="display: block;"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;div class="form-group shiny-input-container"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;label class="control-label" id="test_id-label" for="test_id"&gt;Select&lt;/label&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;select data-actions-box="false" data-none-selected-text="- Nothing selected -" data-max-options="1" data-show-subtext="true" data-live-search="false" data-state-input="true" id="test_id" class="selectpicker form-control" multiple="multiple"&gt;&lt;option value="test_choice" selected&gt;test_choice&lt;/option&gt;&lt;/select&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;div id="test_id_fixed" style="display: none;"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;label class="control-label"&gt;Select&lt;/label&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;code id="test_id_selected_text"&gt;test_choice&lt;/code&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>   &lt;/div&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> &lt;/div&gt;</span>
 </code></pre></div>
     </div>
diff --git a/main/reference/data_extract_single_srv.html b/main/reference/data_extract_single_srv.html
index 1f25416d..73daeb38 100644
--- a/main/reference/data_extract_single_srv.html
+++ b/main/reference/data_extract_single_srv.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
diff --git a/main/reference/data_extract_single_ui.html b/main/reference/data_extract_single_ui.html
index 4d0a5fd3..d802eadf 100644
--- a/main/reference/data_extract_single_ui.html
+++ b/main/reference/data_extract_single_ui.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
@@ -110,23 +100,74 @@ <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-e
 <span class="r-out co"><span class="r-pr">#&gt;</span> &lt;div&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   &lt;div&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;div class="filter_spec"&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;div class="form-group shiny-input-container"&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;label class="control-label" for="test-filter1-col"&gt;Filter by&lt;/label&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;select data-actions-box="false" data-none-selected-text="- Nothing selected -" data-max-options="1" data-show-subtext="true" data-live-search="false" id="test-filter1-col" class="selectpicker form-control" multiple="multiple"&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;option value="extract" data-content="extract"&gt;extract&lt;/option&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;/select&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;script&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         $(function() {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           $('#test-filter1-col').on('change', function(e) {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             var select_concat = $(this).val().length ? $(this).val().join(', ') : 'NULL';</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             $('#test-filter1-col_selected_text').html(select_concat);</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           })</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         })&lt;/script&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;div id="test-filter1-col_input" style="display: block;"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             &lt;div class="form-group shiny-input-container"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>               &lt;label class="control-label" id="test-filter1-col-label" for="test-filter1-col"&gt;Filter by&lt;/label&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>               &lt;select data-actions-box="false" data-none-selected-text="- Nothing selected -" data-max-options="1" data-show-subtext="true" data-live-search="false" data-state-input="true" id="test-filter1-col" class="selectpicker form-control" multiple="multiple"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                 &lt;option value="extract" data-content="extract"&gt;extract&lt;/option&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>               &lt;/select&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;div id="test-filter1-col_fixed" style="display: none;"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             &lt;label class="control-label"&gt;Filter by&lt;/label&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             &lt;code id="test-filter1-col_selected_text"&gt;NULL&lt;/code&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;/div&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;/div&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;div class="form-group shiny-input-container"&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;label class="control-label shiny-label-null" for="test-filter1-vals"&gt;&lt;/label&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;select data-actions-box="true" data-none-selected-text="- Nothing selected -" data-max-options="Inf" data-show-subtext="true" data-live-search="false" id="test-filter1-vals" class="selectpicker form-control" multiple="multiple"&gt;&lt;option value=""&gt;&lt;/option&gt;&lt;/select&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;script&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         $(function() {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           $('#test-filter1-vals').on('change', function(e) {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             var select_concat = $(this).val().length ? $(this).val().join(', ') : 'NULL';</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             $('#test-filter1-vals_selected_text').html(select_concat);</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           })</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         })&lt;/script&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;div id="test-filter1-vals_input" style="display: block;"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             &lt;div class="form-group shiny-input-container"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>               &lt;label class="control-label shiny-label-null" for="test-filter1-vals" id="test-filter1-vals-label"&gt;&lt;/label&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>               &lt;select data-actions-box="true" data-none-selected-text="- Nothing selected -" data-max-options="Inf" data-show-subtext="true" data-live-search="false" data-state-input="true" id="test-filter1-vals" class="selectpicker form-control" multiple="multiple"&gt;&lt;option value=""&gt;&lt;/option&gt;&lt;/select&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;div id="test-filter1-vals_fixed" style="display: none;"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             &lt;label class="control-label"&gt;&lt;/label&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             &lt;code id="test-filter1-vals_selected_text"&gt;NULL&lt;/code&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;/div&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;/div&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;/div&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   &lt;/div&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>   &lt;div class="form-group shiny-input-container"&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;label class="control-label" for="test-select"&gt;Select&lt;/label&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;select data-actions-box="true" data-none-selected-text="- Nothing selected -" data-max-options="Inf" data-show-subtext="true" data-live-search="false" id="test-select" class="selectpicker form-control" multiple="multiple"&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;option value="extract" data-content="extract"&gt;extract&lt;/option&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;/select&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>   &lt;div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;script&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         $(function() {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           $('#test-select').on('change', function(e) {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             var select_concat = $(this).val().length ? $(this).val().join(', ') : 'NULL';</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             $('#test-select_selected_text').html(select_concat);</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           })</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         })&lt;/script&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;div id="test-select_input" style="display: block;"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;div class="form-group shiny-input-container"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;label class="control-label" id="test-select-label" for="test-select"&gt;Select&lt;/label&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;select data-actions-box="true" data-none-selected-text="- Nothing selected -" data-max-options="Inf" data-show-subtext="true" data-live-search="false" data-state-input="true" id="test-select" class="selectpicker form-control" multiple="multiple"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             &lt;option value="extract" data-content="extract"&gt;extract&lt;/option&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           &lt;/select&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;div id="test-select_fixed" style="display: none;"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;label class="control-label"&gt;Select&lt;/label&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         &lt;code id="test-select_selected_text"&gt;NULL&lt;/code&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>       &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;/div&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   &lt;/div&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   &lt;div class="form-group shiny-input-container shinyjs-disabled shinyjs-hide"&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>     &lt;div class="checkbox"&gt;</span>
diff --git a/main/reference/data_extract_spec.html b/main/reference/data_extract_spec.html
index da9d723a..375f012e 100644
--- a/main/reference/data_extract_spec.html
+++ b/main/reference/data_extract_spec.html
@@ -18,7 +18,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -43,16 +43,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
diff --git a/main/reference/data_extract_srv.html b/main/reference/data_extract_srv.html
index 5678eae0..e9c542ca 100644
--- a/main/reference/data_extract_srv.html
+++ b/main/reference/data_extract_srv.html
@@ -12,7 +12,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -37,16 +37,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
@@ -115,7 +105,7 @@ <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#argumen
 
 <dt>datasets</dt>
 <dd><p>(<code>FilteredData</code> or <code>list</code> of <code>reactive</code> or non-<code>reactive</code> <code>data.frame</code>)<br>
-object containing data either in the form of <a href="https://rdrr.io/pkg/teal.slice/man/FilteredData.html" class="external-link">teal.slice::FilteredData</a> or as a list of <code>data.frame</code>.
+object containing data either in the form of <a href="https://insightsengineering.github.io/teal.slice/reference/FilteredData.html" class="external-link">teal.slice::FilteredData</a> or as a list of <code>data.frame</code>.
 When passing a list of non-reactive <code>data.frame</code> objects, they are converted to reactive <code>data.frame</code>s internally.
 When passing a list of reactive or non-reactive <code>data.frame</code> objects, the argument <code>join_keys</code> is required also.</p></dd>
 
@@ -131,7 +121,7 @@ <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#argumen
 
 
 <dt>join_keys</dt>
-<dd><p>(<code>JoinKeys</code> or <code>NULL</code>) of keys per dataset in <code>datasets</code></p></dd>
+<dd><p>(<code>join_keys</code> or <code>NULL</code>) of keys per dataset in <code>datasets</code></p></dd>
 
 
 <dt>select_validation_rule</dt>
@@ -244,11 +234,11 @@ <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-e
 <span class="r-in"><span>  <span class="op">}</span></span></span>
 <span class="r-in"><span><span class="op">)</span></span></span>
 <span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/interactive.html" class="external-link">interactive</a></span><span class="op">(</span><span class="op">)</span><span class="op">)</span> <span class="op">{</span></span></span>
-<span class="r-in"><span>  <span class="fu"><a href="https://rdrr.io/pkg/shiny/man/runApp.html" class="external-link">runApp</a></span><span class="op">(</span><span class="va">app</span><span class="op">)</span></span></span>
+<span class="r-in"><span>  <span class="fu"><a href="https://rdrr.io/pkg/shiny/man/shinyApp.html" class="external-link">shinyApp</a></span><span class="op">(</span><span class="va">app</span><span class="op">$</span><span class="va">ui</span>, <span class="va">app</span><span class="op">$</span><span class="va">server</span><span class="op">)</span></span></span>
 <span class="r-in"><span><span class="op">}</span></span></span>
 <span class="r-in"><span></span></span>
 <span class="r-in"><span><span class="co"># Using FilteredData - Note this method will be deprecated</span></span></span>
-<span class="r-in"><span><span class="va">datasets</span> <span class="op">&lt;-</span> <span class="fu">teal.slice</span><span class="fu">::</span><span class="fu"><a href="https://rdrr.io/pkg/teal.slice/man/init_filtered_data.html" class="external-link">init_filtered_data</a></span><span class="op">(</span></span></span>
+<span class="r-in"><span><span class="va">datasets</span> <span class="op">&lt;-</span> <span class="fu">teal.slice</span><span class="fu">::</span><span class="fu"><a href="https://insightsengineering.github.io/teal.slice/reference/init_filtered_data.html" class="external-link">init_filtered_data</a></span><span class="op">(</span></span></span>
 <span class="r-in"><span>  <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span>ADSL <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span>dataset <span class="op">=</span> <span class="va">ADSL</span><span class="op">)</span><span class="op">)</span>,</span></span>
 <span class="r-in"><span>  join_keys <span class="op">=</span> <span class="fu">teal.data</span><span class="fu">::</span><span class="fu"><a href="https://insightsengineering.github.io/teal.data/reference/join_keys.html" class="external-link">join_keys</a></span><span class="op">(</span></span></span>
 <span class="r-in"><span>    <span class="fu">teal.data</span><span class="fu">::</span><span class="fu"><a href="https://insightsengineering.github.io/teal.data/reference/join_key.html" class="external-link">join_key</a></span><span class="op">(</span><span class="st">"ADSL"</span>, <span class="st">"ADSL"</span>, <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"USUBJID"</span>, <span class="st">"STUDYID"</span><span class="op">)</span><span class="op">)</span></span></span>
@@ -279,7 +269,7 @@ <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-e
 <span class="r-in"><span>  <span class="op">}</span></span></span>
 <span class="r-in"><span><span class="op">)</span></span></span>
 <span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/interactive.html" class="external-link">interactive</a></span><span class="op">(</span><span class="op">)</span><span class="op">)</span> <span class="op">{</span></span></span>
-<span class="r-in"><span>  <span class="fu"><a href="https://rdrr.io/pkg/shiny/man/runApp.html" class="external-link">runApp</a></span><span class="op">(</span><span class="va">app</span><span class="op">)</span></span></span>
+<span class="r-in"><span>  <span class="fu"><a href="https://rdrr.io/pkg/shiny/man/shinyApp.html" class="external-link">shinyApp</a></span><span class="op">(</span><span class="va">app</span><span class="op">$</span><span class="va">ui</span>, <span class="va">app</span><span class="op">$</span><span class="va">server</span><span class="op">)</span></span></span>
 <span class="r-in"><span><span class="op">}</span></span></span>
 </code></pre></div>
     </div>
diff --git a/main/reference/data_extract_ui.html b/main/reference/data_extract_ui.html
index 13f8d2c6..a7e53eee 100644
--- a/main/reference/data_extract_ui.html
+++ b/main/reference/data_extract_ui.html
@@ -20,7 +20,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -45,16 +45,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
@@ -203,27 +193,74 @@ <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-e
 <span class="r-out co"><span class="r-pr">#&gt;</span>             &lt;div&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>               &lt;div class="filter_spec"&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>                 &lt;div class="shinyjs-hide"&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>                   &lt;div class="form-group shiny-input-container shinyjs-hide"&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>                     &lt;label class="control-label shiny-label-null" for="regressor-dataset_ADTTE_singleextract-filter1-col"&gt;&lt;/label&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>                     &lt;select data-actions-box="true" data-none-selected-text="- Nothing selected -" data-max-options="Inf" data-show-subtext="true" data-live-search="false" id="regressor-dataset_ADTTE_singleextract-filter1-col" class="selectpicker form-control" multiple="multiple"&gt;&lt;option value="PARAMCD" selected&gt;PARAMCD&lt;/option&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                   &lt;script&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         $(function() {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           $('#regressor-dataset_ADTTE_singleextract-filter1-col').on('change', function(e) {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             var select_concat = $(this).val().length ? $(this).val().join(', ') : 'NULL';</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             $('#regressor-dataset_ADTTE_singleextract-filter1-col_selected_text').html(select_concat);</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           })</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         })&lt;/script&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                   &lt;div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                     &lt;div id="regressor-dataset_ADTTE_singleextract-filter1-col_input" style="display: none;"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                       &lt;div class="form-group shiny-input-container"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                         &lt;label class="control-label shiny-label-null" for="regressor-dataset_ADTTE_singleextract-filter1-col" id="regressor-dataset_ADTTE_singleextract-filter1-col-label"&gt;&lt;/label&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                         &lt;select data-actions-box="true" data-none-selected-text="- Nothing selected -" data-max-options="Inf" data-show-subtext="true" data-live-search="false" data-state-input="true" id="regressor-dataset_ADTTE_singleextract-filter1-col" class="selectpicker form-control" multiple="multiple"&gt;&lt;option value="PARAMCD" selected&gt;PARAMCD&lt;/option&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> &lt;option value="CNSR" selected&gt;CNSR&lt;/option&gt;&lt;/select&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                       &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                     &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                     &lt;div id="regressor-dataset_ADTTE_singleextract-filter1-col_fixed" style="display: block;"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                       &lt;label class="control-label"&gt;&lt;/label&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                       &lt;code id="regressor-dataset_ADTTE_singleextract-filter1-col_selected_text"&gt;PARAMCD, CNSR&lt;/code&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                     &lt;/div&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>                   &lt;/div&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>                   &lt;label id="regressor-dataset_ADTTE_singleextract-filter1-col_textonly" class="control-label"&gt;&lt;/label&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>                   &lt;code id="regressor-dataset_ADTTE_singleextract-filter1-col_valueonly"&gt;PARAMCD, CNSR&lt;/code&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>                 &lt;/div&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>                 &lt;div class="form-group shiny-input-container"&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>                   &lt;label class="control-label" for="regressor-dataset_ADTTE_singleextract-filter1-vals"&gt;Choose endpoint and Censor&lt;/label&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>                   &lt;select data-actions-box="false" data-none-selected-text="- Nothing selected -" data-max-options="1" data-show-subtext="true" data-live-search="false" id="regressor-dataset_ADTTE_singleextract-filter1-vals" class="selectpicker form-control" multiple="multiple"&gt;&lt;option value="OS-1" selected&gt;OS-1&lt;/option&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                 &lt;div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                   &lt;script&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         $(function() {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           $('#regressor-dataset_ADTTE_singleextract-filter1-vals').on('change', function(e) {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             var select_concat = $(this).val().length ? $(this).val().join(', ') : 'NULL';</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             $('#regressor-dataset_ADTTE_singleextract-filter1-vals_selected_text').html(select_concat);</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           })</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         })&lt;/script&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                   &lt;div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                     &lt;div id="regressor-dataset_ADTTE_singleextract-filter1-vals_input" style="display: block;"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                       &lt;div class="form-group shiny-input-container"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                         &lt;label class="control-label" id="regressor-dataset_ADTTE_singleextract-filter1-vals-label" for="regressor-dataset_ADTTE_singleextract-filter1-vals"&gt;Choose endpoint and Censor&lt;/label&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                         &lt;select data-actions-box="false" data-none-selected-text="- Nothing selected -" data-max-options="1" data-show-subtext="true" data-live-search="false" data-state-input="true" id="regressor-dataset_ADTTE_singleextract-filter1-vals" class="selectpicker form-control" multiple="multiple"&gt;&lt;option value="OS-1" selected&gt;OS-1&lt;/option&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> &lt;option value="OS-0"&gt;OS-0&lt;/option&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> &lt;option value="PFS-1"&gt;PFS-1&lt;/option&gt;&lt;/select&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                       &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                     &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                     &lt;div id="regressor-dataset_ADTTE_singleextract-filter1-vals_fixed" style="display: none;"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                       &lt;label class="control-label"&gt;Choose endpoint and Censor&lt;/label&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                       &lt;code id="regressor-dataset_ADTTE_singleextract-filter1-vals_selected_text"&gt;OS-1&lt;/code&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                     &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                   &lt;/div&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>                 &lt;/div&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>               &lt;/div&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>             &lt;/div&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>             &lt;div class="form-group shiny-input-container"&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>               &lt;label class="control-label" for="regressor-dataset_ADTTE_singleextract-select"&gt;Column&lt;/label&gt;</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>               &lt;select data-actions-box="true" data-none-selected-text="- Nothing selected -" data-max-options="Inf" data-show-subtext="true" data-live-search="false" id="regressor-dataset_ADTTE_singleextract-select" class="selectpicker form-control" multiple="multiple"&gt;&lt;option value="AVAL" selected&gt;AVAL&lt;/option&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             &lt;div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>               &lt;script&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         $(function() {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           $('#regressor-dataset_ADTTE_singleextract-select').on('change', function(e) {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             var select_concat = $(this).val().length ? $(this).val().join(', ') : 'NULL';</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>             $('#regressor-dataset_ADTTE_singleextract-select_selected_text').html(select_concat);</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>           })</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         })&lt;/script&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>               &lt;div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                 &lt;div id="regressor-dataset_ADTTE_singleextract-select_input" style="display: block;"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                   &lt;div class="form-group shiny-input-container"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                     &lt;label class="control-label" id="regressor-dataset_ADTTE_singleextract-select-label" for="regressor-dataset_ADTTE_singleextract-select"&gt;Column&lt;/label&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                     &lt;select data-actions-box="true" data-none-selected-text="- Nothing selected -" data-max-options="Inf" data-show-subtext="true" data-live-search="false" data-state-input="true" id="regressor-dataset_ADTTE_singleextract-select" class="selectpicker form-control" multiple="multiple"&gt;&lt;option value="AVAL" selected&gt;AVAL&lt;/option&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> &lt;option value="BMRKR1" selected&gt;BMRKR1&lt;/option&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> &lt;option value="AGE"&gt;AGE&lt;/option&gt;&lt;/select&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                   &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                 &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                 &lt;div id="regressor-dataset_ADTTE_singleextract-select_fixed" style="display: none;"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                   &lt;label class="control-label"&gt;Column&lt;/label&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                   &lt;code id="regressor-dataset_ADTTE_singleextract-select_selected_text"&gt;AVAL, BMRKR1&lt;/code&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                 &lt;/div&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>               &lt;/div&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>             &lt;/div&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>             &lt;div class="form-group shiny-input-container shinyjs-disabled shinyjs-hide"&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>               &lt;div class="checkbox"&gt;</span>
diff --git a/main/reference/data_merge_module.html b/main/reference/data_merge_module.html
index 6233a5cb..ce48206d 100644
--- a/main/reference/data_merge_module.html
+++ b/main/reference/data_merge_module.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
@@ -92,7 +82,7 @@ <h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage">
     <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
     <dl><dt>datasets</dt>
 <dd><p>(<code>FilteredData</code>)<br>
-object containing data, see <a href="https://rdrr.io/pkg/teal.slice/man/FilteredData.html" class="external-link">teal.slice::FilteredData</a> for more.</p></dd>
+object containing data, see <a href="https://insightsengineering.github.io/teal.slice/reference/FilteredData.html" class="external-link">teal.slice::FilteredData</a> for more.</p></dd>
 
 
 <dt>data_extract</dt>
diff --git a/main/reference/data_merge_srv.html b/main/reference/data_merge_srv.html
index 0edd2fa7..76a8668e 100644
--- a/main/reference/data_merge_srv.html
+++ b/main/reference/data_merge_srv.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
@@ -104,7 +94,7 @@ <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#argumen
 
 <dt>datasets</dt>
 <dd><p>(<code>FilteredData</code>)<br>
-object containing data (see <code><a href="https://rdrr.io/pkg/teal.slice/man/FilteredData.html" class="external-link">teal.slice::FilteredData</a></code>).</p></dd>
+object containing data (see <code><a href="https://insightsengineering.github.io/teal.slice/reference/FilteredData.html" class="external-link">teal.slice::FilteredData</a></code>).</p></dd>
 
 
 <dt>merge_function</dt>
diff --git a/main/reference/datanames_input.html b/main/reference/datanames_input.html
index f2b4c8f9..0b4e9eb0 100644
--- a/main/reference/datanames_input.html
+++ b/main/reference/datanames_input.html
@@ -14,7 +14,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -39,16 +39,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
diff --git a/main/reference/extract_choices_labels.html b/main/reference/extract_choices_labels.html
index 1a82ba93..3b06f577 100644
--- a/main/reference/extract_choices_labels.html
+++ b/main/reference/extract_choices_labels.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
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diff --git a/main/reference/filter_spec.html b/main/reference/filter_spec.html
index fbbc4acd..d3d87a9c 100644
--- a/main/reference/filter_spec.html
+++ b/main/reference/filter_spec.html
@@ -12,7 +12,7 @@
     
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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@@ -37,16 +37,6 @@
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 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
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diff --git a/main/reference/filter_spec_internal.html b/main/reference/filter_spec_internal.html
index 6fe7c4bc..5ff85c2b 100644
--- a/main/reference/filter_spec_internal.html
+++ b/main/reference/filter_spec_internal.html
@@ -14,7 +14,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -39,16 +39,6 @@
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 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
diff --git a/main/reference/format_data_extract.html b/main/reference/format_data_extract.html
index 854e1f51..0b490609 100644
--- a/main/reference/format_data_extract.html
+++ b/main/reference/format_data_extract.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
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 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
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-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
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   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
@@ -108,7 +98,7 @@ <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-e
 <span class="r-in"><span><span class="op">)</span></span></span>
 <span class="r-in"><span></span></span>
 <span class="r-in"><span><span class="va">sample_filtered_data</span> <span class="op">&lt;-</span> <span class="op">{</span></span></span>
-<span class="r-in"><span>  <span class="fu">teal.slice</span><span class="fu">::</span><span class="fu"><a href="https://rdrr.io/pkg/teal.slice/man/init_filtered_data.html" class="external-link">init_filtered_data</a></span><span class="op">(</span></span></span>
+<span class="r-in"><span>  <span class="fu">teal.slice</span><span class="fu">::</span><span class="fu"><a href="https://insightsengineering.github.io/teal.slice/reference/init_filtered_data.html" class="external-link">init_filtered_data</a></span><span class="op">(</span></span></span>
 <span class="r-in"><span>    <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span>iris <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span>dataset <span class="op">=</span> <span class="va">iris</span><span class="op">)</span><span class="op">)</span></span></span>
 <span class="r-in"><span>  <span class="op">)</span></span></span>
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index be2a0942..2560e1a7 100644
--- a/main/reference/get_anl_relabel_call.html
+++ b/main/reference/get_anl_relabel_call.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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@@ -35,16 +35,6 @@
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   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
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diff --git a/main/reference/get_dataset_prefixed_col_names.html b/main/reference/get_dataset_prefixed_col_names.html
index e73420dc..57c36f14 100644
--- a/main/reference/get_dataset_prefixed_col_names.html
+++ b/main/reference/get_dataset_prefixed_col_names.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
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   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
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   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
diff --git a/main/reference/get_dplyr_call.html b/main/reference/get_dplyr_call.html
index b79019d0..14ae0283 100644
--- a/main/reference/get_dplyr_call.html
+++ b/main/reference/get_dplyr_call.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
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   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
@@ -102,7 +92,7 @@ <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#argumen
 
 
 <dt>join_keys</dt>
-<dd><p>(<code>JoinKeys</code>) nested list of keys used for joining</p></dd>
+<dd><p>(<code>join_keys</code>) nested list of keys used for joining</p></dd>
 
 
 <dt>dplyr_call_data</dt>
diff --git a/main/reference/get_dplyr_call_data.html b/main/reference/get_dplyr_call_data.html
index 80d75486..a158803c 100644
--- a/main/reference/get_dplyr_call_data.html
+++ b/main/reference/get_dplyr_call_data.html
@@ -12,7 +12,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -37,16 +37,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
@@ -95,7 +85,7 @@ <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#argumen
 
 
 <dt>join_keys</dt>
-<dd><p>(<code>JoinKeys</code>) nested list of keys used for joining</p></dd>
+<dd><p>(<code>join_keys</code>) nested list of keys used for joining</p></dd>
 
 </dl></div>
     <div class="section level2">
diff --git a/main/reference/get_dropped_filters.html b/main/reference/get_dropped_filters.html
index b357366b..10a6baf4 100644
--- a/main/reference/get_dropped_filters.html
+++ b/main/reference/get_dropped_filters.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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index 500dd9da..3d83d826 100644
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@@ -14,7 +14,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
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@@ -39,16 +39,6 @@
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-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
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diff --git a/main/reference/get_filter_call.html b/main/reference/get_filter_call.html
index e0c30f0a..5386bb71 100644
--- a/main/reference/get_filter_call.html
+++ b/main/reference/get_filter_call.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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@@ -35,16 +35,6 @@
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-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
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diff --git a/main/reference/get_initial_filter_values.html b/main/reference/get_initial_filter_values.html
index c296bd33..58894523 100644
--- a/main/reference/get_initial_filter_values.html
+++ b/main/reference/get_initial_filter_values.html
@@ -14,7 +14,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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@@ -39,16 +39,6 @@
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diff --git a/main/reference/get_merge_call.html b/main/reference/get_merge_call.html
index d6ba3855..9014fd92 100644
--- a/main/reference/get_merge_call.html
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@@ -14,7 +14,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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@@ -39,16 +39,6 @@
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@@ -104,7 +94,7 @@ <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#argumen
 
 
 <dt>join_keys</dt>
-<dd><p>(<code>JoinKeys</code>) nested list of keys used for joining</p></dd>
+<dd><p>(<code>join_keys</code>) nested list of keys used for joining</p></dd>
 
 
 <dt>dplyr_call_data</dt>
diff --git a/main/reference/get_merge_key_grid.html b/main/reference/get_merge_key_grid.html
index 1a9ed956..157d98f3 100644
--- a/main/reference/get_merge_key_grid.html
+++ b/main/reference/get_merge_key_grid.html
@@ -10,7 +10,7 @@
     
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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@@ -35,16 +35,6 @@
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@@ -92,7 +82,7 @@ <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#argumen
 
 
 <dt>join_keys</dt>
-<dd><p>(<code>JoinKeys</code>) nested list of keys used for joining</p></dd>
+<dd><p>(<code>join_keys</code>) nested list of keys used for joining</p></dd>
 
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index 65037e12..193386ae 100644
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@@ -10,7 +10,7 @@
     
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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@@ -35,16 +35,6 @@
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index fb5b8cfb..9dea9a9d 100644
--- a/main/reference/get_merge_key_pair.html
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@@ -10,7 +10,7 @@
     
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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@@ -35,16 +35,6 @@
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index 2398f0f4..8def5f33 100644
--- a/main/reference/get_pivot_longer_col.html
+++ b/main/reference/get_pivot_longer_col.html
@@ -10,7 +10,7 @@
     
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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@@ -35,16 +35,6 @@
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-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
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diff --git a/main/reference/get_relabel_call.html b/main/reference/get_relabel_call.html
index 36e44418..a938d791 100644
--- a/main/reference/get_relabel_call.html
+++ b/main/reference/get_relabel_call.html
@@ -12,7 +12,7 @@
     
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
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diff --git a/main/reference/get_relabel_cols.html b/main/reference/get_relabel_cols.html
index 29d5df6c..27862e6c 100644
--- a/main/reference/get_relabel_cols.html
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@@ -10,7 +10,7 @@
     
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
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diff --git a/main/reference/get_rename_call.html b/main/reference/get_rename_call.html
index bd1876ac..65eefa41 100644
--- a/main/reference/get_rename_call.html
+++ b/main/reference/get_rename_call.html
@@ -10,7 +10,7 @@
     
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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@@ -35,16 +35,6 @@
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 <dt>join_keys</dt>
-<dd><p>(<code>JoinKeys</code>) nested list of keys used for joining</p></dd>
+<dd><p>(<code>join_keys</code>) nested list of keys used for joining</p></dd>
 
 
 <dt>dplyr_call_data</dt>
diff --git a/main/reference/get_reshape_call.html b/main/reference/get_reshape_call.html
index 482946b4..42ca5b31 100644
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@@ -10,7 +10,7 @@
     
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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@@ -101,7 +91,7 @@ <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#argumen
 
 
 <dt>join_keys</dt>
-<dd><p>(<code>JoinKeys</code>) nested list of keys used for joining</p></dd>
+<dd><p>(<code>join_keys</code>) nested list of keys used for joining</p></dd>
 
 
 <dt>dplyr_call_data</dt>
diff --git a/main/reference/get_reshape_unite_col.html b/main/reference/get_reshape_unite_col.html
index a0f0321a..33710a6e 100644
--- a/main/reference/get_reshape_unite_col.html
+++ b/main/reference/get_reshape_unite_col.html
@@ -12,7 +12,7 @@
     
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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diff --git a/main/reference/get_reshape_unite_vals.html b/main/reference/get_reshape_unite_vals.html
index 40242fe8..5efc303f 100644
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@@ -10,7 +10,7 @@
     
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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diff --git a/main/reference/get_select_call.html b/main/reference/get_select_call.html
index 6572b438..91cc2659 100644
--- a/main/reference/get_select_call.html
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@@ -10,7 +10,7 @@
     
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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index 28cb0f6e..0765613b 100644
--- a/main/reference/include_css_files.html
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@@ -14,7 +14,7 @@
     
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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index a5a020ad..02438299 100644
--- a/main/reference/index.html
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@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
diff --git a/main/reference/is_single_dataset.html b/main/reference/is_single_dataset.html
index ff4a1c6f..3185f185 100644
--- a/main/reference/is_single_dataset.html
+++ b/main/reference/is_single_dataset.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
diff --git a/main/reference/list_extract_spec.html b/main/reference/list_extract_spec.html
index 79fbd2aa..22194b1a 100644
--- a/main/reference/list_extract_spec.html
+++ b/main/reference/list_extract_spec.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
diff --git a/main/reference/merge_datasets.html b/main/reference/merge_datasets.html
index cf0d62d8..f23e05aa 100644
--- a/main/reference/merge_datasets.html
+++ b/main/reference/merge_datasets.html
@@ -12,7 +12,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -37,16 +37,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
@@ -107,7 +97,7 @@ <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#argumen
 
 
 <dt>join_keys</dt>
-<dd><p>(<code>JoinKeys</code>)<br>
+<dd><p>(<code>join_keys</code>)<br>
 of variables used as join keys for each of the datasets in <code>datasets</code>.
 This will be used to extract the <code>keys</code> of every dataset.</p></dd>
 
diff --git a/main/reference/merge_expression_module.html b/main/reference/merge_expression_module.html
index 6f4ec079..21ca6796 100644
--- a/main/reference/merge_expression_module.html
+++ b/main/reference/merge_expression_module.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
@@ -98,7 +88,7 @@ <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#argumen
 
 
 <dt>join_keys</dt>
-<dd><p>(<code>JoinKeys</code>)<br>
+<dd><p>(<code>join_keys</code>)<br>
 of variables used as join keys for each of the datasets in <code>datasets</code>.
 This will be used to extract the <code>keys</code> of every dataset.</p></dd>
 
@@ -248,7 +238,7 @@ <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-e
 <span class="r-in"><span>  <span class="op">}</span></span></span>
 <span class="r-in"><span><span class="op">)</span></span></span>
 <span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="cn">FALSE</span><span class="op">)</span> <span class="op">{</span></span></span>
-<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/pkg/shiny/man/runApp.html" class="external-link">runApp</a></span><span class="op">(</span><span class="va">app</span><span class="op">)</span></span></span>
+<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/pkg/shiny/man/shinyApp.html" class="external-link">shinyApp</a></span><span class="op">(</span><span class="va">app</span><span class="op">$</span><span class="va">ui</span>, <span class="va">app</span><span class="op">$</span><span class="va">server</span><span class="op">)</span></span></span>
 <span class="r-in"><span><span class="op">}</span></span></span>
 </code></pre></div>
     </div>
diff --git a/main/reference/merge_expression_srv.html b/main/reference/merge_expression_srv.html
index cc1354b3..69bfc79c 100644
--- a/main/reference/merge_expression_srv.html
+++ b/main/reference/merge_expression_srv.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
@@ -110,7 +100,7 @@ <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#argumen
 
 
 <dt>join_keys</dt>
-<dd><p>(<code>JoinKeys</code>)<br>
+<dd><p>(<code>join_keys</code>)<br>
 of variables used as join keys for each of the datasets in <code>datasets</code>.
 This will be used to extract the <code>keys</code> of every dataset.</p></dd>
 
@@ -257,7 +247,7 @@ <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-e
 <span class="r-in"><span>  <span class="op">}</span></span></span>
 <span class="r-in"><span><span class="op">)</span></span></span>
 <span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="cn">FALSE</span><span class="op">)</span> <span class="op">{</span></span></span>
-<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/pkg/shiny/man/runApp.html" class="external-link">runApp</a></span><span class="op">(</span><span class="va">app</span><span class="op">)</span></span></span>
+<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/pkg/shiny/man/shinyApp.html" class="external-link">shinyApp</a></span><span class="op">(</span><span class="va">app</span><span class="op">$</span><span class="va">ui</span>, <span class="va">app</span><span class="op">$</span><span class="va">server</span><span class="op">)</span></span></span>
 <span class="r-in"><span><span class="op">}</span></span></span>
 </code></pre></div>
     </div>
diff --git a/main/reference/merge_selectors.html b/main/reference/merge_selectors.html
index 90242d1e..9eb246d1 100644
--- a/main/reference/merge_selectors.html
+++ b/main/reference/merge_selectors.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
diff --git a/main/reference/no_selected_as_NULL.html b/main/reference/no_selected_as_NULL.html
index 295a70be..c03afc42 100644
--- a/main/reference/no_selected_as_NULL.html
+++ b/main/reference/no_selected_as_NULL.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
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-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
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diff --git a/main/reference/parse_merge_key_i.html b/main/reference/parse_merge_key_i.html
index 92f18658..39a1b79a 100644
--- a/main/reference/parse_merge_key_i.html
+++ b/main/reference/parse_merge_key_i.html
@@ -10,7 +10,7 @@
     
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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@@ -35,16 +35,6 @@
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-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
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diff --git a/main/reference/rADAE.html b/main/reference/rADAE.html
index 5970c48c..c6e17f66 100644
--- a/main/reference/rADAE.html
+++ b/main/reference/rADAE.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
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diff --git a/main/reference/rADLB.html b/main/reference/rADLB.html
index 80744939..992bf418 100644
--- a/main/reference/rADLB.html
+++ b/main/reference/rADLB.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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index 47eacc4a..25ab3987 100644
--- a/main/reference/rADRS.html
+++ b/main/reference/rADRS.html
@@ -10,7 +10,7 @@
     
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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@@ -35,16 +35,6 @@
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-<!-- start dropdown for versions --> <li class="nav-item dropdown">
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-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
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index ff7055c3..9275aa30 100644
--- a/main/reference/rADSL.html
+++ b/main/reference/rADSL.html
@@ -10,7 +10,7 @@
     
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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@@ -35,16 +35,6 @@
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-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
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-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
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diff --git a/main/reference/rADTTE.html b/main/reference/rADTTE.html
index 70d6fabe..ec1e912e 100644
--- a/main/reference/rADTTE.html
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@@ -10,7 +10,7 @@
     
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
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@@ -35,16 +35,6 @@
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-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
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-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
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diff --git a/main/reference/resolve.html b/main/reference/resolve.html
index 098cd18b..07b428e3 100644
--- a/main/reference/resolve.html
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@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
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 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
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-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
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diff --git a/main/reference/resolve_delayed.html b/main/reference/resolve_delayed.html
index b8a7f935..234ee425 100644
--- a/main/reference/resolve_delayed.html
+++ b/main/reference/resolve_delayed.html
@@ -10,7 +10,7 @@
     
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
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   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
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-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
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@@ -108,7 +98,7 @@ <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2
     <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
     <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">ADSL</span> <span class="op">&lt;-</span> <span class="fu">teal.transform</span><span class="fu">::</span><span class="va"><a href="rADSL.html">rADSL</a></span></span></span>
 <span class="r-in"><span><span class="fu">shiny</span><span class="fu">::</span><span class="fu"><a href="https://rdrr.io/pkg/shiny/man/isolate.html" class="external-link">isolate</a></span><span class="op">(</span><span class="op">{</span></span></span>
-<span class="r-in"><span>  <span class="va">ds</span> <span class="op">&lt;-</span> <span class="fu">teal.slice</span><span class="fu">::</span><span class="fu"><a href="https://rdrr.io/pkg/teal.slice/man/init_filtered_data.html" class="external-link">init_filtered_data</a></span><span class="op">(</span></span></span>
+<span class="r-in"><span>  <span class="va">ds</span> <span class="op">&lt;-</span> <span class="fu">teal.slice</span><span class="fu">::</span><span class="fu"><a href="https://insightsengineering.github.io/teal.slice/reference/init_filtered_data.html" class="external-link">init_filtered_data</a></span><span class="op">(</span></span></span>
 <span class="r-in"><span>    <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span>ADSL <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span>dataset <span class="op">=</span> <span class="va">ADSL</span><span class="op">)</span><span class="op">)</span></span></span>
 <span class="r-in"><span>  <span class="op">)</span></span></span>
 <span class="r-in"><span></span></span>
diff --git a/main/reference/resolve_delayed_expr.html b/main/reference/resolve_delayed_expr.html
index ee4e223f..8cfe2560 100644
--- a/main/reference/resolve_delayed_expr.html
+++ b/main/reference/resolve_delayed_expr.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
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   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
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diff --git a/main/reference/select_spec.html b/main/reference/select_spec.html
index 33e3cecc..bcfd927a 100644
--- a/main/reference/select_spec.html
+++ b/main/reference/select_spec.html
@@ -14,7 +14,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -39,16 +39,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
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-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
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 <li class="nav-item dropdown">
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diff --git a/main/reference/split_by_sep.html b/main/reference/split_by_sep.html
index ab2df805..8278075f 100644
--- a/main/reference/split_by_sep.html
+++ b/main/reference/split_by_sep.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
diff --git a/main/reference/teal.transform-package.html b/main/reference/teal.transform-package.html
index e1543ece..e59dbdd7 100644
--- a/main/reference/teal.transform-package.html
+++ b/main/reference/teal.transform-package.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
diff --git a/main/reference/validate_keys_sufficient.html b/main/reference/validate_keys_sufficient.html
index d8470305..858d310e 100644
--- a/main/reference/validate_keys_sufficient.html
+++ b/main/reference/validate_keys_sufficient.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
@@ -85,7 +75,7 @@ <h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage">
     <div class="section level2">
     <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
     <dl><dt>join_keys</dt>
-<dd><p>(<code>JoinKeys</code>) the provided join keys</p></dd>
+<dd><p>(<code>join_keys</code>) the provided join keys</p></dd>
 
 
 <dt>merged_selector_list</dt>
diff --git a/main/reference/value_choices.html b/main/reference/value_choices.html
index 47062ec1..7805c6aa 100644
--- a/main/reference/value_choices.html
+++ b/main/reference/value_choices.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
diff --git a/main/reference/variable_choices.html b/main/reference/variable_choices.html
index 839a6399..42b23f7a 100644
--- a/main/reference/variable_choices.html
+++ b/main/reference/variable_choices.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teal.transform</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9003</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.0.9006</small>
 
     <div style="width: 140px; margin-left: 0.5rem;"> <small class="nav-text text-muted me-auto">part of</small> <img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/nest.png?raw=true" alt="NEST" style="height: 30px;"><a href="https://pharmaverse.org/" class="external-link"><img src="https://github.com/insightsengineering/hex-stickers/blob/main/PNG/pharmaverse.png?raw=true" alt="pharmaverse" style="height: 28px;"></a> </div>
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,16 +35,6 @@
 <li class="nav-item">
   <a class="nav-link" href="../news/index.html">Changelog</a>
 </li>
-<!-- start dropdown for versions --> <li class="nav-item dropdown">
-        <a href="#" class="nav-link dropdown-toggle"
-          data-bs-toggle="dropdown" role="button"
-          aria-expanded="false" aria-haspopup="true"
-          id="dropdown-versions">Versions</a> <div class="dropdown-menu" aria-labelledby="dropdown-versions"> <a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/main">main</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/latest-tag">latest-tag</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.4.0">v0.4.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.3.0">v0.3.0</a>
-<a class="dropdown-item" data-toggle="tooltip" title="" href="https://insightsengineering.github.io/teal.transform/v0.2.0">v0.2.0</a> </div></li>
-<!-- end dropdown for versions -->
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-reports">Reports</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-reports">
@@ -342,7 +332,7 @@ <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-e
 <span class="r-out co"><span class="r-pr">#&gt;</span>   idx &lt;- vapply(data, is.factor, logical(1))</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   return(names(data)[idx])</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;environment: 0x556c05392ad8&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;environment: 0x563aab0f8270&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> $ key</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> NULL</span>
 </code></pre></div>
diff --git a/main/search.json b/main/search.json
index 9f94c8d7..65490ba3 100644
--- a/main/search.json
+++ b/main/search.json
@@ -1 +1 @@
-[{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/CODE_OF_CONDUCT.html","id":"our-pledge","dir":"","previous_headings":"","what":"Our Pledge","title":"Contributor Covenant Code of Conduct","text":"members, contributors, leaders pledge make participation community harassment-free experience everyone, regardless age, body size, visible invisible disability, ethnicity, sex characteristics, gender identity expression, level experience, education, socio-economic status, nationality, personal appearance, race, caste, color, religion, sexual identity orientation. pledge act interact ways contribute open, welcoming, diverse, inclusive, healthy community.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CODE_OF_CONDUCT.html","id":"our-standards","dir":"","previous_headings":"","what":"Our Standards","title":"Contributor Covenant Code of Conduct","text":"Examples behavior contributes positive environment community include: Demonstrating empathy kindness toward people respectful differing opinions, viewpoints, experiences Giving gracefully accepting constructive feedback Accepting responsibility apologizing affected mistakes, learning experience Focusing best just us individuals, overall community Examples unacceptable behavior include: use sexualized language imagery, sexual attention advances kind Trolling, insulting derogatory comments, personal political attacks Public private harassment Publishing others’ private information, physical email address, without explicit permission conduct reasonably considered inappropriate professional setting","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CODE_OF_CONDUCT.html","id":"enforcement-responsibilities","dir":"","previous_headings":"","what":"Enforcement Responsibilities","title":"Contributor Covenant Code of Conduct","text":"Community leaders responsible clarifying enforcing standards acceptable behavior take appropriate fair corrective action response behavior deem inappropriate, threatening, offensive, harmful. Community leaders right responsibility remove, edit, reject comments, commits, code, wiki edits, issues, contributions aligned Code Conduct, communicate reasons moderation decisions appropriate.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CODE_OF_CONDUCT.html","id":"scope","dir":"","previous_headings":"","what":"Scope","title":"Contributor Covenant Code of Conduct","text":"Code Conduct applies within community spaces, also applies individual officially representing community public spaces. Examples representing community include using official e-mail address, posting via official social media account, acting appointed representative online offline event.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CODE_OF_CONDUCT.html","id":"enforcement","dir":"","previous_headings":"","what":"Enforcement","title":"Contributor Covenant Code of Conduct","text":"Instances abusive, harassing, otherwise unacceptable behavior may reported community leaders responsible enforcement [INSERT CONTACT METHOD]. complaints reviewed investigated promptly fairly. community leaders obligated respect privacy security reporter incident.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CODE_OF_CONDUCT.html","id":"enforcement-guidelines","dir":"","previous_headings":"","what":"Enforcement Guidelines","title":"Contributor Covenant Code of Conduct","text":"Community leaders follow Community Impact Guidelines determining consequences action deem violation Code Conduct:","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CODE_OF_CONDUCT.html","id":"id_1-correction","dir":"","previous_headings":"Enforcement Guidelines","what":"1. Correction","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Use inappropriate language behavior deemed unprofessional unwelcome community. Consequence: private, written warning community leaders, providing clarity around nature violation explanation behavior inappropriate. public apology may requested.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CODE_OF_CONDUCT.html","id":"id_2-warning","dir":"","previous_headings":"Enforcement Guidelines","what":"2. Warning","title":"Contributor Covenant Code of Conduct","text":"Community Impact: violation single incident series actions. Consequence: warning consequences continued behavior. interaction people involved, including unsolicited interaction enforcing Code Conduct, specified period time. includes avoiding interactions community spaces well external channels like social media. Violating terms may lead temporary permanent ban.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CODE_OF_CONDUCT.html","id":"id_3-temporary-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"3. Temporary Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: serious violation community standards, including sustained inappropriate behavior. Consequence: temporary ban sort interaction public communication community specified period time. public private interaction people involved, including unsolicited interaction enforcing Code Conduct, allowed period. Violating terms may lead permanent ban.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CODE_OF_CONDUCT.html","id":"id_4-permanent-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"4. Permanent Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Demonstrating pattern violation community standards, including sustained inappropriate behavior, harassment individual, aggression toward disparagement classes individuals. Consequence: permanent ban sort public interaction within community.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CODE_OF_CONDUCT.html","id":"attribution","dir":"","previous_headings":"","what":"Attribution","title":"Contributor Covenant Code of Conduct","text":"Code Conduct adapted Contributor Covenant, version 2.1, available https://www.contributor-covenant.org/version/2/1/code_of_conduct.html. Community Impact Guidelines inspired Mozilla’s code conduct enforcement ladder. answers common questions code conduct, see FAQ https://www.contributor-covenant.org/faq. Translations available https://www.contributor-covenant.org/translations.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":null,"dir":"","previous_headings":"","what":"Contribution Guidelines","title":"Contribution Guidelines","text":"🙏 Thank taking time contribute! input deeply valued, whether issue, pull request, even feedback, regardless size, content scope.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"table-of-contents","dir":"","previous_headings":"","what":"Table of contents","title":"Contribution Guidelines","text":"👶 Getting started 📔 Code Conduct 🗃 License 📜 Issues 🚩 Pull requests 💻 Coding guidelines 🏆 Recognition model ❓ Questions","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"getting-started","dir":"","previous_headings":"","what":"Getting started","title":"Contribution Guidelines","text":"Please refer project documentation brief introduction. Please also see articles within project documentation additional information.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"code-of-conduct","dir":"","previous_headings":"","what":"Code of Conduct","title":"Contribution Guidelines","text":"Code Conduct governs project. Participants contributors expected follow rules outlined therein.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"license","dir":"","previous_headings":"","what":"License","title":"Contribution Guidelines","text":"contributions covered project’s license.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"issues","dir":"","previous_headings":"","what":"Issues","title":"Contribution Guidelines","text":"use GitHub track issues, feature requests, bugs. submitting new issue, please check issue already reported. issue already exists, please upvote existing issue 👍. new feature requests, please elaborate context benefit feature users, developers, relevant personas.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"github-flow","dir":"","previous_headings":"Pull requests","what":"GitHub Flow","title":"Contribution Guidelines","text":"repository uses GitHub Flow model collaboration. submit pull request: Create branch Please see branch naming convention . don’t write access repository, please fork . Make changes Make sure code passes checks imposed GitHub Actions well documented well tested unit tests sufficiently covering changes introduced Create pull request (PR) pull request description, please link relevant issue (), provide detailed description change, include assumptions. Address review comments, Post approval Merge PR write access. Otherwise, reviewer merge PR behalf. Pat back Congratulations! 🎉 now official contributor project! grateful contribution.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"branch-naming-convention","dir":"","previous_headings":"Pull requests","what":"Branch naming convention","title":"Contribution Guidelines","text":"Suppose changes related current issue current project; please name branch follows: <issue_id>_<short_description>. Please use underscore (_) delimiter word separation. example, 420_fix_ui_bug suitable branch name change resolving UI-related bug reported issue number 420 current project. change affects multiple repositories, please name branches follows: <issue_id>_<issue_repo>_<short description>. example, 69_awesomeproject_fix_spelling_error reference issue 69 reported project awesomeproject aims resolve one spelling errors multiple (likely related) repositories.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"monorepo-and-stageddependencies","dir":"","previous_headings":"Pull requests","what":"monorepo and staged.dependencies","title":"Contribution Guidelines","text":"Sometimes might need change upstream dependent package(s) able submit meaningful change. using staged.dependencies functionality simulate monorepo behavior. dependency configuration already specified project’s staged_dependencies.yaml file. need name feature branches appropriately. exception branch naming convention described . Please refer staged.dependencies package documentation details.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"coding-guidelines","dir":"","previous_headings":"","what":"Coding guidelines","title":"Contribution Guidelines","text":"repository follows unified processes standards adopted maintainers ensure software development carried consistently within teams cohesively across repositories.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"style-guide","dir":"","previous_headings":"Coding guidelines","what":"Style guide","title":"Contribution Guidelines","text":"repository follows standard tidyverse style guide uses lintr lint checks. Customized lint configurations available repository’s .lintr file.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"dependency-management","dir":"","previous_headings":"Coding guidelines","what":"Dependency management","title":"Contribution Guidelines","text":"Lightweight right weight. repository follows tinyverse recommedations limiting dependencies minimum.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"dependency-version-management","dir":"","previous_headings":"Coding guidelines","what":"Dependency version management","title":"Contribution Guidelines","text":"code compatible (!) historical versions given dependenct package, required specify minimal version DESCRIPTION file. particular: development version requires (imports) development version another package - required put abc (>= 1.2.3.9000).","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"r--package-versions","dir":"","previous_headings":"Coding guidelines > Recommended development environment & tools","what":"R & package versions","title":"Contribution Guidelines","text":"continuously test packages newest R version along recent dependencies CRAN BioConductor. recommend working environment also set way. can find details R version packages used R CMD check GitHub Action execution log - step prints R sessionInfo(). discover bugs older R versions older set dependencies, please create relevant bug reports.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"pre-commit","dir":"","previous_headings":"Coding guidelines > Recommended development environment & tools","what":"pre-commit","title":"Contribution Guidelines","text":"highly recommend use pre-commit tool combined R hooks pre-commit execute checks committing pushing changes. Pre-commit hooks already available repository’s .pre-commit-config.yaml file.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"recognition-model","dir":"","previous_headings":"","what":"Recognition model","title":"Contribution Guidelines","text":"mentioned previously, contributions deeply valued appreciated. contribution data available part repository insights, recognize significant contribution hence add contributor package authors list, following rules enforced: Minimum 5% lines code authored* (determined git blame query) top 5 contributors terms number commits lines added lines removed* *Excluding auto-generated code, including limited roxygen comments renv.lock files. package maintainer also reserves right adjust criteria recognize contributions.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"questions","dir":"","previous_headings":"","what":"Questions","title":"Contribution Guidelines","text":"questions regarding contribution guidelines, please contact package/repository maintainer.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/SECURITY.html","id":"reporting-security-issues","dir":"","previous_headings":"","what":"Reporting Security Issues","title":"Security Policy","text":"believe found security vulnerability repositories organization, please report us coordinated disclosure. Please report security vulnerabilities public GitHub issues, discussions, pull requests. Instead, please send email vulnerability.management[@]roche.com. Please include much information listed can help us better understand resolve issue: type issue (e.g., buffer overflow, SQL injection, cross-site scripting) Full paths source file(s) related manifestation issue location affected source code (tag/branch/commit direct URL) special configuration required reproduce issue Step--step instructions reproduce issue Proof--concept exploit code (possible) Impact issue, including attacker might exploit issue information help us triage report quickly.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/SECURITY.html","id":"data-security-standards-dss","dir":"","previous_headings":"","what":"Data Security Standards (DSS)","title":"Security Policy","text":"Please make sure reporting issues form bug, feature, pull request, sensitive information PII, PHI, PCI completely removed text attachments, including pictures videos.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/articles/data-extract-merge.html","id":"example-module","dir":"Articles","previous_headings":"","what":"Example module","title":"Combining Data Extract with Data Merge","text":", create merge_ui merge_srv functions used create ui srv components shiny app, respectively. Output data_extract_srv (reactive) passed merge_expression_srv together datasets (list data.frame objects) join_keys list. merge_expression_srv returns reactive list containing merge expression information needed perform transformation - see merge_expression_srv documentation.","code":"merge_ui <- function(id, data_extracts) {   ns <- NS(id)   teal.widgets::standard_layout(     output = teal.widgets::white_small_well(       verbatimTextOutput(ns(\"expr\")),       dataTableOutput(ns(\"data\"))     ),     encoding = div(       teal.transform::data_extract_ui(         ns(\"adsl_extract\"), # must correspond with data_extracts list names         label = \"ADSL extract\",         data_extracts[[1]]       ),       teal.transform::data_extract_ui(         ns(\"adtte_extract\"), # must correspond with data_extracts list names         label = \"ADTTE extract\",         data_extracts[[2]]       )     )   ) }  merge_srv <- function(id, datasets, data_extracts, join_keys) {   moduleServer(id, function(input, output, session) {     selector_list <- teal.transform::data_extract_multiple_srv(data_extracts, datasets, join_keys)     merged_data <- teal.transform::merge_expression_srv(       selector_list = selector_list,       datasets = datasets,       join_keys = join_keys,       merge_function = \"dplyr::left_join\"     )     ANL <- reactive({ # nolint       eval(envir = list2env(datasets), expr = as.expression(merged_data()$expr))     })     output$expr <- renderText(paste(merged_data()$expr, collapse = \"\\n\"))     output$data <- renderDataTable(ANL())   }) }"},{"path":"https://insightsengineering.github.io/teal.transform/articles/data-extract-merge.html","id":"example-data","dir":"Articles","previous_headings":"","what":"Example data","title":"Combining Data Extract with Data Merge","text":"data_extract_srv module depends either list reactive non-reactive data.frame objects. , show usage list data.frame objects input datasets list necessary join keys per data.frame object required:","code":"# Define data.frame objects ADSL <- teal.transform::rADSL # nolint ADTTE <- teal.transform::rADTTE # nolint  # create a list of data.frame objects datasets <- list(ADSL = ADSL, ADTTE = ADTTE)  # create join_keys join_keys <- teal.data::join_keys(   teal.data::join_key(\"ADSL\", \"ADSL\", c(\"STUDYID\", \"USUBJID\")),   teal.data::join_key(\"ADSL\", \"ADTTE\", c(\"STUDYID\", \"USUBJID\")),   teal.data::join_key(\"ADTTE\", \"ADTTE\", c(\"STUDYID\", \"USUBJID\", \"PARAMCD\")) )"},{"path":"https://insightsengineering.github.io/teal.transform/articles/data-extract-merge.html","id":"shiny-app","dir":"Articles","previous_headings":"","what":"Shiny app","title":"Combining Data Extract with Data Merge","text":"Finally, pass merge_ui merge_srv ui server functions shinyApp using data_extracts defined first code block datasets object:","code":"shinyApp(   ui = fluidPage(merge_ui(\"data_merge\", data_extracts)),   server = function(input, output, session) {     merge_srv(\"data_merge\", datasets, data_extracts, join_keys)   } )"},{"path":"https://insightsengineering.github.io/teal.transform/articles/data-extract.html","id":"data_extract_spec","dir":"Articles","previous_headings":"","what":"data_extract_spec","title":"Data Extract","text":"data_extract_spec’s task two-fold: create UI component shiny application pass user input UI module . formulated, let’s look supports responsibilities.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/articles/data-extract.html","id":"example-module","dir":"Articles","previous_headings":"data_extract_spec","what":"Example module","title":"Data Extract","text":"order showcase different initialization options data_extract_spec, first define shiny module uses data_extract_ui data_extract_srv designed handle data_extract_spec objects. module creates UI component single data_extract_spec prints list values returned data_extract_srv module. Please see package documentation information data_extract_ui data_extract_srv.","code":"library(teal.transform) #> Loading required package: magrittr library(shiny)  extract_ui <- function(id, data_extract) {   ns <- NS(id)   teal.widgets::standard_layout(     output = teal.widgets::white_small_well(verbatimTextOutput(ns(\"output\"))),     encoding = data_extract_ui(ns(\"data_extract\"), label = \"variable\", data_extract)   ) }  extract_srv <- function(id, datasets, data_extract, join_keys) {   moduleServer(id, function(input, output, session) {     reactive_extract_input <- data_extract_srv(\"data_extract\", datasets, data_extract, join_keys)     s <- reactive({       format_data_extract(reactive_extract_input())     })     output$output <- renderPrint({       cat(s())     })   }) }"},{"path":"https://insightsengineering.github.io/teal.transform/articles/data-extract.html","id":"example-data","dir":"Articles","previous_headings":"data_extract_spec","what":"Example data","title":"Data Extract","text":"data_extract_srv module depends either list reactive non-reactive data.frame objects. , show usage list data.frame objects input datasets list necessary join keys per data.frame object required: Consider following example, create two UI elements, one filter specific level SEX variable, second one select variable c(\"BMRKR1\", \"AGE\"). data_extract_spec object handed shiny app gives instructions generate UI components.","code":"# Define data.frame objects ADSL <- teal.transform::rADSL # nolint ADTTE <- teal.transform::rADTTE # nolint  # create a list of data.frame objects datasets <- list(ADSL = ADSL, ADTTE = ADTTE)  # create join_keys join_keys <- teal.data::join_keys(   teal.data::join_key(\"ADSL\", \"ADSL\", c(\"STUDYID\", \"USUBJID\")),   teal.data::join_key(\"ADSL\", \"ADTTE\", c(\"STUDYID\", \"USUBJID\")),   teal.data::join_key(\"ADTTE\", \"ADTTE\", c(\"STUDYID\", \"USUBJID\", \"PARAMCD\")) ) simple_des <- data_extract_spec(   dataname = \"ADSL\",   filter = filter_spec(vars = \"SEX\", choices = c(\"F\", \"M\")),   select = select_spec(choices = c(\"BMRKR1\", \"AGE\")) )"},{"path":"https://insightsengineering.github.io/teal.transform/articles/data-extract.html","id":"shiny-app","dir":"Articles","previous_headings":"data_extract_spec","what":"Shiny app","title":"Data Extract","text":"Finally, pass extract_ui ui shinyApp use extract_srv server function shinyApp:","code":"shinyApp(   ui = fluidPage(extract_ui(\"data_extract\", simple_des)),   server = function(input, output, session) {     extract_srv(\"data_extract\", datasets, simple_des, join_keys)   } )"},{"path":"https://insightsengineering.github.io/teal.transform/articles/data-merge.html","id":"merge_expression_module","dir":"Articles","previous_headings":"","what":"merge_expression_module","title":"Data Merge","text":"merge_expression_module solely, need list data_extract_spec objects data_extract argument, list reactive non-reactive data.frame objects list join keys corresponding every data.frame object.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/articles/data-merge.html","id":"app-code","dir":"Articles","previous_headings":"merge_expression_module","what":"App code","title":"Data Merge","text":"","code":"library(teal.transform) #> Loading required package: magrittr library(shiny)  adsl_extract <- teal.transform::data_extract_spec(   dataname = \"ADSL\",   select = select_spec(     label = \"Select variable:\",     choices = c(\"AGE\", \"BMRKR1\"),     selected = \"AGE\",     multiple = TRUE,     fixed = FALSE   ) )  adtte_extract <- teal.transform::data_extract_spec(   dataname = \"ADTTE\",   select = select_spec(     choices = c(\"AVAL\", \"ASEQ\"),     selected = \"AVAL\",     multiple = TRUE,     fixed = FALSE   ) )  data_extracts <- list(adsl_extract = adsl_extract, adtte_extract = adtte_extract)  merge_ui <- function(id, data_extracts) {   ns <- NS(id)   teal.widgets::standard_layout(     output = teal.widgets::white_small_well(       verbatimTextOutput(ns(\"expr\")),       dataTableOutput(ns(\"data\"))     ),     encoding = div(       teal.transform::data_extract_ui(         ns(\"adsl_extract\"), # must correspond with data_extracts list names         label = \"ADSL extract\",         data_extracts[[1]]       ),       teal.transform::data_extract_ui(         ns(\"adtte_extract\"), # must correspond with data_extracts list names         label = \"ADTTE extract\",         data_extracts[[2]]       )     )   ) }  merge_module <- function(id, datasets, data_extracts, join_keys) {   moduleServer(id, function(input, output, session) {     merged_data <- teal.transform::merge_expression_module(       data_extract = data_extracts,       datasets = datasets,       join_keys = join_keys,       merge_function = \"dplyr::left_join\"     )      ANL <- reactive({ # nolint       eval(envir = list2env(datasets), expr = as.expression(merged_data()$expr))     })     output$expr <- renderText(paste(merged_data()$expr, collapse = \"\\n\"))     output$data <- renderDataTable(ANL())   }) }  # Define data.frame objects ADSL <- teal.transform::rADSL # nolint ADTTE <- teal.transform::rADTTE # nolint  # create a list of data.frame objects datasets <- list(ADSL = ADSL, ADTTE = ADTTE)  # create  join_keys join_keys <- teal.data::join_keys(   teal.data::join_key(\"ADSL\", \"ADSL\", c(\"STUDYID\", \"USUBJID\")),   teal.data::join_key(\"ADSL\", \"ADTTE\", c(\"STUDYID\", \"USUBJID\")),   teal.data::join_key(\"ADTTE\", \"ADTTE\", c(\"STUDYID\", \"USUBJID\", \"PARAMCD\")) )"},{"path":"https://insightsengineering.github.io/teal.transform/articles/data-merge.html","id":"shiny-app","dir":"Articles","previous_headings":"merge_expression_module","what":"Shiny app","title":"Data Merge","text":"","code":"shinyApp(   ui = fluidPage(merge_ui(\"data_merge\", data_extracts)),   server = function(input, output, session) {     merge_module(\"data_merge\", datasets, data_extracts, join_keys)   } )"},{"path":"https://insightsengineering.github.io/teal.transform/articles/data-merge.html","id":"data_extract_multiple_srv-merge_expression_srv","dir":"Articles","previous_headings":"","what":"data_extract_multiple_srv + merge_expression_srv","title":"Data Merge","text":"scenario , user deselects ADTTE variable, merging ADTTE ADSL still take place even though ADTTE used needed . , developer might update selector_list input reactive manner gets updated based conditions set developer. , reuse input update app server adtte_extract removed selector_list input ADTTE variable selected reactive_selector_list passed merge_expression_srv:","code":"merge_module <- function(id, datasets, data_extracts, join_keys) {   moduleServer(id, function(input, output, session) {     selector_list <- teal.transform::data_extract_multiple_srv(data_extracts, datasets, join_keys)     reactive_selector_list <- reactive({       if (is.null(selector_list()$adtte_extract) || length(selector_list()$adtte_extract()$select) == 0) {         selector_list()[names(selector_list()) != \"adtte_extract\"]       } else {         selector_list()       }     })      merged_data <- teal.transform::merge_expression_srv(       selector_list = reactive_selector_list,       datasets = datasets,       join_keys = join_keys,       merge_function = \"dplyr::left_join\"     )      ANL <- reactive({ # nolint       eval(envir = list2env(datasets), expr = as.expression(merged_data()$expr))     })     output$expr <- renderText(paste(merged_data()$expr, collapse = \"\\n\"))     output$data <- renderDataTable(ANL())   }) }"},{"path":"https://insightsengineering.github.io/teal.transform/articles/data-merge.html","id":"shiny-app-1","dir":"Articles","previous_headings":"data_extract_multiple_srv + merge_expression_srv","what":"Shiny app","title":"Data Merge","text":"merge_expression_module replaced three parts: selector_list: output data_extract_multiple_srv loops list data_extract given runs data_extract_srv one returning list reactive objects. reactive_selector_list: intermediate reactive list updating selector_list content merged_data: output merge_expression_srv using reactive_selector_list input","code":"shinyApp(   ui = fluidPage(merge_ui(\"data_merge\", data_extracts)),   server = function(input, output, session) {     merge_module(\"data_merge\", datasets, data_extracts, join_keys)   } )"},{"path":"https://insightsengineering.github.io/teal.transform/articles/data-merge.html","id":"output-from-merging","dir":"Articles","previous_headings":"","what":"Output from merging","title":"Data Merge","text":"merge functions, merge_expression_srv merge_expression_module, return reactive object contains list following elements: expr: code needed replicate merged dataset columns_source: list columns selected per selector keys: keys merged dataset filter_info: filters applied data elements can used inside server retrieve use information selections, data, filters, …","code":""},{"path":"https://insightsengineering.github.io/teal.transform/articles/data-merge.html","id":"merging-of-non-cdisc-datasets","dir":"Articles","previous_headings":"","what":"Merging of non CDISC datasets","title":"Data Merge","text":"General datasets share relationships CDISC datasets thus relationships must specified join_keys functions. information, please refer Join Keys vignette. data merge module respects relationships given user case multiple datasets merge, order specified order elements data_extract argument merge_expression_module function. Merging groups datasets complex relationships can quickly become challenging specify please take extra care setting .","code":""},{"path":"https://insightsengineering.github.io/teal.transform/articles/teal-transform.html","id":"introduction","dir":"Articles","previous_headings":"","what":"Introduction","title":"Getting Started with teal.transform","text":"teal.transform package integral component teal framework. serves dual purpose: teal module developers, offers standardized user interface column selection datasets facilitates dataset merging, resulting creation analysis datasets use within modules. teal application developers, provides means specify dataset columns can accessed user interface, streamlining column selection within applications.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/articles/teal-transform.html","id":"data-extraction-and-data-merging","dir":"Articles","previous_headings":"","what":"Data Extraction and Data Merging","title":"Getting Started with teal.transform","text":"delve process selecting specific data columns, please consult Data Extraction vignette. comprehensive information regarding data merging, please refer Data Merge vignette. explore combined use data extraction merging, please explore Combining data-extract data-merge vignette.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Dawid Kaledkowski. Author, maintainer. Pawel Rucki. Author. Mahmoud Hallal. Author. Nikolas Burkoff. Author. Maciej Nasinski. Author. Konrad Pagacz. Author. Junlue Zhao. Author. F. Hoffmann-La Roche AG. Copyright holder, funder.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Kaledkowski D, Rucki P, Hallal M, Burkoff N, Nasinski M, Pagacz K, Zhao J (2023). teal.transform: Functions Extracting Merging Data 'teal' Framework. https://insightsengineering.github.io/teal.transform/, https://github.com/insightsengineering/teal.transform/.","code":"@Manual{,   title = {teal.transform: Functions for Extracting and Merging Data in the 'teal' Framework},   author = {Dawid Kaledkowski and Pawel Rucki and Mahmoud Hallal and Nikolas Burkoff and Maciej Nasinski and Konrad Pagacz and Junlue Zhao},   year = {2023},   note = {https://insightsengineering.github.io/teal.transform/, https://github.com/insightsengineering/teal.transform/}, }"},{"path":"https://insightsengineering.github.io/teal.transform/index.html","id":"tealtransform","dir":"","previous_headings":"","what":"Functions for Extracting and Merging Data in the teal Framework","title":"Functions for Extracting and Merging Data in the teal Framework","text":"package contains functions shiny modules extracting merging data within teal framework.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/index.html","id":"installation","dir":"","previous_headings":"","what":"Installation","title":"Functions for Extracting and Merging Data in the teal Framework","text":"Alternatively, might want use development version available r-universe.","code":"# stable versions install.packages('teal.transform', repos = c('https://insightsengineering.r-universe.dev', getOption('repos')))  # install.packages(\"pak\") pak::pak(\"insightsengineering/teal.transform@*release\") # beta versions install.packages('teal.transform', repos = c('https://pharmaverse.r-universe.dev', getOption('repos')))  # install.packages(\"pak\") pak::pak(\"insightsengineering/teal.transform\")"},{"path":"https://insightsengineering.github.io/teal.transform/index.html","id":"usage","dir":"","previous_headings":"","what":"Usage","title":"Functions for Extracting and Merging Data in the teal Framework","text":"understand use package, please refer Getting Started article, provides multiple examples code implementation. small example usage:","code":"library(teal.transform) ADSL <- teal.transform::rADSL  adsl_extract <- data_extract_spec(   dataname = \"ADSL\",   filter = filter_spec(vars = \"SEX\", choices = c(\"F\", \"M\")),   select = select_spec(choices = c(\"BMRKR1\", \"AGE\")) )  ui <- data_extract_ui(   id = \"adsl_ui\",   label = \"ADSL UI\",   data_extract_spec = adsl_extract )  library(shiny) ui <- fluidPage(ui) server <- function(input, output, session) {} shinyApp(ui, server)"},{"path":"https://insightsengineering.github.io/teal.transform/index.html","id":"getting-help","dir":"","previous_headings":"","what":"Getting help","title":"Functions for Extracting and Merging Data in the teal Framework","text":"encounter bug feature request - please file issue. questions, discussions staying date, please use “teal” channel pharmaverse slack workspace.","code":""},{"path":[]},{"path":[]},{"path":[]},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/pull_request_template.html","id":null,"dir":"","previous_headings":"","what":"Pull Request","title":"Pull Request","text":"Fixes #nnn","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":null,"dir":"Reference","previous_headings":"","what":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"Abstract data type stores returns number elements. Queue object stores elements single vector, thus data types can stored, silent coercion may occur. Elements returned order added.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"public-methods","dir":"Reference","previous_headings":"","what":"Public methods","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"Queue$push() Queue$get() Queue$pop() Queue$remove() Queue$empty() Queue$size() Queue$print() Queue$clone()","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"method-push-","dir":"Reference","previous_headings":"","what":"Method push()","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"Adds element(s) Queue.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"usage","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"","code":"Queue$push(new_elements)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"new_elements vector elements add","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"returns","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"self invisibly","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"method-get-","dir":"Reference","previous_headings":"","what":"Method get()","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"Returns contents Queue object.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"usage-1","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"","code":"Queue$get()"},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"returns-1","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"single vector containing Queue contents","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"method-pop-","dir":"Reference","previous_headings":"","what":"Method pop()","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"Returns first (oldest) element Queue removes .","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"usage-2","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"","code":"Queue$pop()"},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"returns-2","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"vector length 1 containing first element Queue NULL Queue empty","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"method-remove-","dir":"Reference","previous_headings":"","what":"Method remove()","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"Removes oldest occurrence specified element(s) Queue. Relies implicit type conversions R identify elements remove.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"usage-3","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"","code":"Queue$remove(elements)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"arguments-1","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"elements vector elements remove Queue","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"returns-3","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"self invisibly","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"method-empty-","dir":"Reference","previous_headings":"","what":"Method empty()","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"Removes elements Queue.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"usage-4","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"","code":"Queue$empty()"},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"returns-4","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"self invisibly","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"method-size-","dir":"Reference","previous_headings":"","what":"Method size()","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"Returns number elements Queue.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"usage-5","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"","code":"Queue$size()"},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"returns-5","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"integer length 1","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"method-print-","dir":"Reference","previous_headings":"","what":"Method print()","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"Prints Queue.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"usage-6","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"","code":"Queue$print(...)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"arguments-2","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"... additional arguments method, ignored","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"returns-6","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"invisibly self","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"method-clone-","dir":"Reference","previous_headings":"","what":"Method clone()","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"objects class cloneable method.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"usage-7","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"","code":"Queue$clone(deep = FALSE)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"arguments-3","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"deep Whether make deep clone.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/add_no_selected_choices.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Add empty choice to choices selected — add_no_selected_choices","text":"","code":"add_no_selected_choices(x, multiple = FALSE)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/add_no_selected_choices.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Add empty choice to choices selected — add_no_selected_choices","text":"x (choices_selected) output multiple (logical) whether multiple selections allowed ","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/all_choices.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"An S3 structure representing the selection of all\npossible choices in a filter_spec, select_spec or choices_selected object. — all_choices","text":"","code":"all_choices()"},{"path":"https://insightsengineering.github.io/teal.transform/reference/all_choices.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"An S3 structure representing the selection of all\npossible choices in a filter_spec, select_spec or choices_selected object. — all_choices","text":"all_choices object","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/all_choices.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"An S3 structure representing the selection of all\npossible choices in a filter_spec, select_spec or choices_selected object. — all_choices","text":"","code":"# Both structures are semantically identical filter_spec(   vars = c(\"selected_variable\"),   choices = c(\"value1\", \"value2\"),   selected = c(\"value1\", \"value2\") ) #> filter_spec with delayed data: #> $ vars_choices #> [1] \"selected_variable\" #> $ vars_selected #> [1] \"selected_variable\" #> $ vars_label #> NULL #> $ vars_fixed #> [1] TRUE #> $ vars_multiple #> [1] TRUE #> $ choices #> [1] \"value1\" \"value2\" #> $ selected #> [1] \"value1\" \"value2\" #> $ label #> [1] \"Filter by\" #> $ multiple #> [1] TRUE #> $ fixed #> [1] FALSE #> $ sep #> [1] \" - \" #> $ drop_keys #> [1] FALSE #> $ dataname #> NULL #> $ initialized #> [1] FALSE  filter_spec(   vars = c(\"selected_variable\"),   choices = c(\"value1\", \"value2\"),   selected = all_choices() ) #> filter_spec with delayed data: #> $ vars_choices #> [1] \"selected_variable\" #> $ vars_selected #> [1] \"selected_variable\" #> $ vars_label #> NULL #> $ vars_fixed #> [1] TRUE #> $ vars_multiple #> [1] TRUE #> $ choices #> [1] \"value1\" \"value2\" #> $ selected #> [1] \"value1\" \"value2\" #> $ label #> [1] \"Filter by\" #> $ multiple #> [1] TRUE #> $ fixed #> [1] FALSE #> $ sep #> [1] \" - \" #> $ drop_keys #> [1] FALSE #> $ dataname #> NULL #> $ initialized #> [1] FALSE  choices_selected(choices = letters, selected = letters) #> $choices #>  [1] \"a\" \"b\" \"c\" \"d\" \"e\" \"f\" \"g\" \"h\" \"i\" \"j\" \"k\" \"l\" \"m\" \"n\" \"o\" \"p\" \"q\" \"r\" \"s\" #> [20] \"t\" \"u\" \"v\" \"w\" \"x\" \"y\" \"z\" #>  #> $selected #>  [1] \"a\" \"b\" \"c\" \"d\" \"e\" \"f\" \"g\" \"h\" \"i\" \"j\" \"k\" \"l\" \"m\" \"n\" \"o\" \"p\" \"q\" \"r\" \"s\" #> [20] \"t\" \"u\" \"v\" \"w\" \"x\" \"y\" \"z\" #>  #> $fixed #> [1] FALSE #>  #> attr(,\"class\") #> [1] \"choices_selected\" choices_selected(choices = letters, selected = all_choices()) #> $choices #>  [1] \"a\" \"b\" \"c\" \"d\" \"e\" \"f\" \"g\" \"h\" \"i\" \"j\" \"k\" \"l\" \"m\" \"n\" \"o\" \"p\" \"q\" \"r\" \"s\" #> [20] \"t\" \"u\" \"v\" \"w\" \"x\" \"y\" \"z\" #>  #> $selected #>  [1] \"a\" \"b\" \"c\" \"d\" \"e\" \"f\" \"g\" \"h\" \"i\" \"j\" \"k\" \"l\" \"m\" \"n\" \"o\" \"p\" \"q\" \"r\" \"s\" #> [20] \"t\" \"u\" \"v\" \"w\" \"x\" \"y\" \"z\" #>  #> $fixed #> [1] FALSE #>  #> attr(,\"class\") #> [1] \"choices_selected\""},{"path":"https://insightsengineering.github.io/teal.transform/reference/are_needed_keys_provided.html","id":null,"dir":"Reference","previous_headings":"","what":"Checks whether the provided slices have the corresponding join keys — are_needed_keys_provided","title":"Checks whether the provided slices have the corresponding join keys — are_needed_keys_provided","text":"Checks whether provided slices corresponding join keys","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/are_needed_keys_provided.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Checks whether the provided slices have the corresponding join keys — are_needed_keys_provided","text":"","code":"are_needed_keys_provided(join_keys, merged_selector_list)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/are_needed_keys_provided.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Checks whether the provided slices have the corresponding join keys — are_needed_keys_provided","text":"join_keys (JoinKeys) provided join keys merged_selector_list (list) specification datasets' slices merge","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/are_needed_keys_provided.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Checks whether the provided slices have the corresponding join keys — are_needed_keys_provided","text":"TRUE pairs slices corresponding keys; FALSE otherwise","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/are_needed_keys_provided.html","id":"note","dir":"Reference","previous_headings":"","what":"Note","title":"Checks whether the provided slices have the corresponding join keys — are_needed_keys_provided","text":"merged_selector_list contains list descriptions data frame slices; coming single dataset. function checks whether pairs datasets join keys needed merge slices.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_check_parse_varname.html","id":null,"dir":"Reference","previous_headings":"","what":"Checks varname argument and convert to call — call_check_parse_varname","title":"Checks varname argument and convert to call — call_check_parse_varname","text":"Checks varname type parse character","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_check_parse_varname.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Checks varname argument and convert to call — call_check_parse_varname","text":"","code":"call_check_parse_varname(varname)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_check_parse_varname.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Checks varname argument and convert to call — call_check_parse_varname","text":"varname (name, call character(1)) name variable","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_choice.html","id":null,"dir":"Reference","previous_headings":"","what":"Choices condition call — call_condition_choice","title":"Choices condition call — call_condition_choice","text":"Compose choices condition call inputs.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_choice.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Choices condition call — call_condition_choice","text":"","code":"call_condition_choice(varname, choices)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_choice.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Choices condition call — call_condition_choice","text":"varname (name, call character(1)) name variable choices (vector)varname values match using == (single value) %% (vector) condition. choices can vector type output might converted: factor call composed choices converted character Date call composed choices converted character using format(choices) POSIXct, POSIXlt Call composed choices converted character using format(choices). One careful formatted date-time variable might loose precision (see format argument format.POSIXlt) output call insufficient exact comparison. case one specify varname = trunc(<varname>) possibly convert choices character)","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_choice.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Choices condition call — call_condition_choice","text":"call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_choice.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Choices condition call — call_condition_choice","text":"","code":"teal.transform:::call_condition_choice(\"SEX\", choices = c(1, 2)) #> SEX %in% c(1, 2) teal.transform:::call_condition_choice(as.name(\"SEX\"), choices = \"F\") #> SEX == \"F\" teal.transform:::call_condition_choice(\"SEX\", choices = c(\"F\", \"M\")) #> SEX %in% c(\"F\", \"M\") teal.transform:::call_condition_choice(\"SEX\", choices = factor(c(\"F\", \"M\"))) #> SEX %in% c(\"F\", \"M\") teal.transform:::call_condition_choice(\"x$SEX\", choices = Sys.Date()) #> x$SEX == \"2023-09-19\" teal.transform:::call_condition_choice(\"trunc(x$SEX)\", choices = Sys.time()) #> trunc(x$SEX) == \"2023-09-19 18:56:31\""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_logical.html","id":null,"dir":"Reference","previous_headings":"","what":"logical variable condition call — call_condition_logical","title":"logical variable condition call — call_condition_logical","text":"Compose logical variable condition call inputs","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_logical.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"logical variable condition call — call_condition_logical","text":"","code":"call_condition_logical(varname, choice)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_logical.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"logical variable condition call — call_condition_logical","text":"varname (name character(1)) name variable choice (logical(1)) chosen value","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_logical.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"logical variable condition call — call_condition_logical","text":"call call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_logical.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"logical variable condition call — call_condition_logical","text":"","code":"teal.transform:::call_condition_logical(\"event\", choice = TRUE) #> event teal.transform:::call_condition_logical(\"event\", choice = FALSE) #> !event"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range.html","id":null,"dir":"Reference","previous_headings":"","what":"numeric range condition call — call_condition_range","title":"numeric range condition call — call_condition_range","text":"Compose numeric range condition call inputs","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"numeric range condition call — call_condition_range","text":"","code":"call_condition_range(varname, range)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"numeric range condition call — call_condition_range","text":"varname (name character(1)) name variable range (numeric(2)) range variable","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"numeric range condition call — call_condition_range","text":"call call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"numeric range condition call — call_condition_range","text":"","code":"teal.transform:::call_condition_range(\"AGE\", range = c(1, 2)) #> AGE >= 1 & AGE <= 2 teal.transform:::call_condition_range(as.name(\"AGE\"), range = c(-1.2, 2.1)) #> AGE >= -1.2 & AGE <= 2.1 teal.transform:::call_condition_range(   teal.transform:::call_extract_list(\"ADSL\", \"AGE\"),   range = c(-1.2, 2.1) ) #> ADSL$AGE >= -1.2 & ADSL$AGE <= 2.1"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range_date.html","id":null,"dir":"Reference","previous_headings":"","what":"Date range condition call — call_condition_range_date","title":"Date range condition call — call_condition_range_date","text":"Compose Date range condition call inputs","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range_date.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Date range condition call — call_condition_range_date","text":"","code":"call_condition_range_date(varname, range)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range_date.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Date range condition call — call_condition_range_date","text":"varname (name character(1)) name variable range (Date) range variable","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range_date.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Date range condition call — call_condition_range_date","text":"call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range_date.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Date range condition call — call_condition_range_date","text":"","code":"teal.transform:::call_condition_range_date(   as.name(\"date\"),   range = c(Sys.Date(), Sys.Date() + 1) ) #> date >= as.Date(\"2023-09-19\") & date <= as.Date(\"2023-09-20\")"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range_posixct.html","id":null,"dir":"Reference","previous_headings":"","what":"POSIXct range condition call — call_condition_range_posixct","title":"POSIXct range condition call — call_condition_range_posixct","text":"Compose POSIXct range condition call inputs.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range_posixct.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"POSIXct range condition call — call_condition_range_posixct","text":"","code":"call_condition_range_posixct(varname, range, timezone = Sys.timezone())"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range_posixct.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"POSIXct range condition call — call_condition_range_posixct","text":"varname (name character(1)) name variable range (POSIXct) range variable. aware output uses truncated range format \"%Y-%m-%d %H:%M:%S\", means precision might lost. timezone (character(1)) specifies time zone used conversion. default Sys.timezone() used.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range_posixct.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"POSIXct range condition call — call_condition_range_posixct","text":"call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range_posixct.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"POSIXct range condition call — call_condition_range_posixct","text":"","code":"teal.transform:::call_condition_range_posixct(   varname = as.name(\"datetime\"),   range = c(Sys.time(), Sys.time() + 1),   timezone = \"UTC\" ) #> datetime >= as.POSIXct(\"2023-09-19 18:56:32\", tz = \"UTC\") & datetime <  #>     as.POSIXct(\"2023-09-19 18:56:34\", tz = \"UTC\")"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_array.html","id":null,"dir":"Reference","previous_headings":"","what":"Get call to subset and select array — call_extract_array","title":"Get call to subset and select array — call_extract_array","text":"Get call subset select array","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_array.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get call to subset and select array — call_extract_array","text":"","code":"call_extract_array(dataname = \".\", row = NULL, column = NULL, aisle = NULL)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_array.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get call to subset and select array — call_extract_array","text":"dataname (character(1) name) row (name, call, logical, integer, character) optional, name row condition column (name, call, logical, integer, character) optional, name column condition aisle (name, call, logical, integer, character) optional, name row condition","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_array.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get call to subset and select array — call_extract_array","text":"[ call conditions included specific Extract  call 3-dimensional array","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_array.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get call to subset and select array — call_extract_array","text":"","code":"teal.transform:::call_extract_array(   dataname = \"my_array\",   row = teal.transform:::call_condition_choice(\"my_array$SEX\", \"M\"),   column = call(\"c\", \"SEX\", \"AGE\"),   aisle = \"RNAseq_rnaaccess\" ) #> my_array[my_array$SEX == \"M\", c(\"SEX\", \"AGE\"), \"RNAseq_rnaaccess\"] teal.transform:::call_extract_array(   \"mae_object\",   column = teal.transform:::call_condition_choice(\"SEX\", \"M\") ) #> mae_object[, SEX == \"M\", ]"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_list.html","id":null,"dir":"Reference","previous_headings":"","what":"Compose extract call with $ operator — call_extract_list","title":"Compose extract call with $ operator — call_extract_list","text":"Compose extract call $ operator","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_list.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Compose extract call with $ operator — call_extract_list","text":"","code":"call_extract_list(dataname, varname, dollar = TRUE)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_list.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Compose extract call with $ operator — call_extract_list","text":"dataname (character(1) name) name object varname (character(1) name) name slot data dollar (logical(1)) whether returned call use $ [[ operator","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_list.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Compose extract call with $ operator — call_extract_list","text":"$ [[ call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_list.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Compose extract call with $ operator — call_extract_list","text":"","code":"teal.transform:::call_extract_list(\"ADSL\", \"SEX\") #> ADSL$SEX teal.transform:::call_extract_list(\"ADSL\", \"named element\") #> ADSL$\"named element\" teal.transform:::call_extract_list(as.name(\"ADSL\"), as.name(\"AGE\")) #> ADSL$AGE teal.transform:::call_extract_list(as.name(\"weird name\"), as.name(\"AGE\")) #> `weird name`$AGE teal.transform:::call_extract_list(as.name(\"ADSL\"), \"AGE\", dollar = FALSE) #> ADSL[[\"AGE\"]]"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_matrix.html","id":null,"dir":"Reference","previous_headings":"","what":"Get call to subset and select matrix — call_extract_matrix","title":"Get call to subset and select matrix — call_extract_matrix","text":"Get call subset select matrix","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_matrix.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get call to subset and select matrix — call_extract_matrix","text":"","code":"call_extract_matrix(dataname = \".\", row = NULL, column = NULL)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_matrix.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get call to subset and select matrix — call_extract_matrix","text":"dataname (character(1) name) row (name, call, logical, integer, character) optional, name row condition column (name, call, logical, integer, character) optional, name column condition","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_matrix.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get call to subset and select matrix — call_extract_matrix","text":"[ call conditions included specific Extract  call matrix","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_matrix.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get call to subset and select matrix — call_extract_matrix","text":"","code":"teal.transform:::call_extract_matrix(   dataname = \"my_array\",   row = teal.transform:::call_condition_choice(\"my_array$SEX\", \"M\"),   column = call(\"c\", \"SEX\", \"AGE\") ) #> my_array[my_array$SEX == \"M\", c(\"SEX\", \"AGE\")] teal.transform:::call_extract_matrix(   \"mae_object\",   column = teal.transform:::call_condition_choice(\"SEX\", \"M\") ) #> mae_object[, SEX == \"M\"]"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_with_colon.html","id":null,"dir":"Reference","previous_headings":"","what":"Create a call using a function in a given namespace — call_with_colon","title":"Create a call using a function in a given namespace — call_with_colon","text":"arguments ... need quoted evaluated otherwise","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_with_colon.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create a call using a function in a given namespace — call_with_colon","text":"","code":"call_with_colon(name, ..., unlist_args = list())"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_with_colon.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create a call using a function in a given namespace — call_with_colon","text":"name character function name, possibly using namespace colon ::, also works ::: (sometimes needed, strongly discouraged) ... arguments pass function name name unlist_args list extra arguments passed single list, avoids use .call function","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_with_colon.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create a call using a function in a given namespace — call_with_colon","text":"","code":"print_call_and_eval <- function(x) {   eval(print(x)) }  print_call_and_eval(   teal.transform:::call_with_colon(\"glue::glue\", \"x = {x}\", x = 10) ) #> glue::glue(\"x = {x}\", x = 10) #> x = 10 if (FALSE) { # mtcars$cyl evaluated print_call_and_eval(   teal.transform:::call_with_colon(\"dplyr::filter\", as.name(\"mtcars\"), mtcars$cyl == 6) )  # mtcars$cyl argument not evaluated immediately (in call expression) print_call_and_eval(   teal.transform:::call_with_colon(\"dplyr::filter\", as.name(\"mtcars\"), quote(cyl == 6)) )  # does not work because argument is evaluated and the # non-dplyr filter does not look inside mtcars # cannot eval because it does not pass checks because of non-standard evaluation call(\"filter\", as.name(\"mtcars\"), quote(cyl == 6)) # works, but non-dplyr filter is taken call(\"filter\", as.name(\"mtcars\"), mtcars$cyl == 6)  nb_args <- function(...) nargs() print_call_and_eval(   teal.transform:::call_with_colon(\"nb_args\", arg1 = 1, unlist_args = list(arg2 = 2, args3 = 3)) ) # duplicate arguments print_call_and_eval(   teal.transform:::call_with_colon(\"nb_args\", arg1 = 1, unlist_args = list(arg2 = 2, args2 = 2)) ) }"},{"path":"https://insightsengineering.github.io/teal.transform/reference/calls_combine_by.html","id":null,"dir":"Reference","previous_headings":"","what":"Combine calls by operator — calls_combine_by","title":"Combine calls by operator — calls_combine_by","text":"Combine list calls specific operator","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/calls_combine_by.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Combine calls by operator — calls_combine_by","text":"","code":"calls_combine_by(operator, calls)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/calls_combine_by.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Combine calls by operator — calls_combine_by","text":"operator (character(1) name) name/symbol operator. calls (list calls) list containing calls combined operator","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/calls_combine_by.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Combine calls by operator — calls_combine_by","text":"call combined call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/calls_combine_by.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Combine calls by operator — calls_combine_by","text":"","code":"teal.transform:::calls_combine_by(   \"&\",   calls = list(     teal.transform:::call_condition_choice(\"SEX\", \"F\"),     teal.transform:::call_condition_range(\"AGE\", c(20, 50)),     teal.transform:::call_condition_choice(\"ARM\", \"ARM: A\"),     TRUE   ) ) #> SEX == \"F\" & (AGE >= 20 & AGE <= 50) & ARM == \"ARM: A\" & TRUE"},{"path":"https://insightsengineering.github.io/teal.transform/reference/check_data_extract_spec_react.html","id":null,"dir":"Reference","previous_headings":"","what":"Function to check data_extract_specs — check_data_extract_spec_react","title":"Function to check data_extract_specs — check_data_extract_spec_react","text":"Checks dataname argument exists dataset. Checks selected filter columns exist within datasets. Throws shiny validation error requirements met.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/check_data_extract_spec_react.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Function to check data_extract_specs — check_data_extract_spec_react","text":"","code":"check_data_extract_spec_react(datasets, data_extract)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/check_data_extract_spec_react.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Function to check data_extract_specs — check_data_extract_spec_react","text":"datasets (FilteredData) object created using teal API data_extract (list) output data_extract module","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/check_data_extract_spec_react.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Function to check data_extract_specs — check_data_extract_spec_react","text":"NULL","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/check_data_merge_selectors.html","id":null,"dir":"Reference","previous_headings":"","what":"Validate data_extracts in merge_datasets — check_data_merge_selectors","title":"Validate data_extracts in merge_datasets — check_data_merge_selectors","text":"Validate selected inputs data_extract passing data_merge avoid dplyr errors unexpected results","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/check_data_merge_selectors.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Validate data_extracts in merge_datasets — check_data_merge_selectors","text":"","code":"check_data_merge_selectors(selector_list)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/check_data_merge_selectors.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Validate data_extracts in merge_datasets — check_data_merge_selectors","text":"selector_list (reactive) output data_extract_multiple_srv() reactive named list outputs data_extract_srv(). using reactive named list, names must identical shiny ids respective data_extract_ui().","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/check_data_merge_selectors.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Validate data_extracts in merge_datasets — check_data_merge_selectors","text":"NULL check successful","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/check_no_multiple_selection.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Checks that the extract_input specification does not allow multiple\nselection — check_no_multiple_selection","text":"","code":"check_no_multiple_selection(extract_input)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/check_no_multiple_selection.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Checks that the extract_input specification does not allow multiple\nselection — check_no_multiple_selection","text":"extract_input data_extract_spec list data_extract_spec NULL Stops condition met","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/choices_labeled.html","id":null,"dir":"Reference","previous_headings":"","what":"Set ","title":"Set ","text":"often useful choices_selected marks drop-boxes shiny::selectInput().","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/choices_labeled.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Set ","text":"","code":"choices_labeled(choices, labels, subset = NULL, types = NULL)  # S3 method for choices_labeled print(x, ...)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/choices_labeled.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Set ","text":"choices character / factor / numeric / logical vector. labels character vector containing labels applied choices. NA \"Label Missing\" used. subset vector subset choices. useful variables need named. argument used, returned vector match order. types Character vector containing types columns used applying appropriate icons choices_selected drop box. (e.g. \"numeric\") x object used select method. ... arguments passed methods.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/choices_labeled.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Set ","text":"named character vector","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/choices_labeled.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Set ","text":"either choices labels factors, coerced character. Duplicated elements choices get removed.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/choices_labeled.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Set ","text":"","code":"library(shiny)  ADSL <- teal.transform::rADSL ADTTE <- teal.transform::rADTTE choices1 <- choices_labeled(names(ADSL), teal.data::col_labels(ADSL, fill = FALSE)) choices2 <- choices_labeled(ADTTE$PARAMCD, ADTTE$PARAM) # if only a subset of variables are needed, use subset argument choices3 <- choices_labeled(   names(ADSL),   teal.data::col_labels(ADSL, fill = FALSE),   subset = c(\"ARMCD\", \"ARM\") ) if (FALSE) { shinyApp(   ui = fluidPage(     selectInput(\"c1\",       label = \"Choices from ADSL\",       choices = choices1,       selected = choices1[1]     ),     selectInput(\"c2\",       label = \"Choices from ADTTE\",       choices = choices2,       selected = choices2[1]     ),     selectInput(\"c3\",       label = \"Arm choices from ADSL\",       choices = choices3,       selected = choices3[1]     )   ),   server = function(input, output) {} ) }"},{"path":"https://insightsengineering.github.io/teal.transform/reference/choices_selected.html","id":null,"dir":"Reference","previous_headings":"","what":"Choices Selected — choices_selected","title":"Choices Selected — choices_selected","text":"Construct single list containing available choices, default selected value, additional settings order choices selected elements appearing first whether block user making selections. Can used ui input elements teal.widgets::optionalSelectInput()","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/choices_selected.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Choices Selected — choices_selected","text":"","code":"choices_selected(   choices,   selected = if (inherits(choices, \"delayed_data\")) NULL else choices[1],   keep_order = FALSE,   fixed = FALSE )  is.choices_selected(x)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/choices_selected.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Choices Selected — choices_selected","text":"choices (character) vector possible choices delayed_data object See variable_choices() value_choices(). selected (character) vector preselected options, (all_choices) object (delayed_data) object. delayed_data object choices must also delayed_data object. supplied default first element choices choices vector, NULL choices delayed_data object. keep_order (logical) case FALSE selected variables top drop-field. fixed optional, (logical) Whether block user select choices x object check","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/choices_selected.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Choices Selected — choices_selected","text":"Object class choices_selected type list contains specified choices, selected, keep_order fixed.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/choices_selected.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Choices Selected — choices_selected","text":"Please note order selected always follow order choices. keep_order argument set false run following code inside: choices <- c(selected, setdiff(choices, selected)) case want keep specific order choices, set keep_order TRUE.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/choices_selected.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Choices Selected — choices_selected","text":"","code":"library(shiny)  # all_choices example - semantically the same objects choices_selected(choices = letters, selected = all_choices()) #> $choices #>  [1] \"a\" \"b\" \"c\" \"d\" \"e\" \"f\" \"g\" \"h\" \"i\" \"j\" \"k\" \"l\" \"m\" \"n\" \"o\" \"p\" \"q\" \"r\" \"s\" #> [20] \"t\" \"u\" \"v\" \"w\" \"x\" \"y\" \"z\" #>  #> $selected #>  [1] \"a\" \"b\" \"c\" \"d\" \"e\" \"f\" \"g\" \"h\" \"i\" \"j\" \"k\" \"l\" \"m\" \"n\" \"o\" \"p\" \"q\" \"r\" \"s\" #> [20] \"t\" \"u\" \"v\" \"w\" \"x\" \"y\" \"z\" #>  #> $fixed #> [1] FALSE #>  #> attr(,\"class\") #> [1] \"choices_selected\" choices_selected(choices = letters, selected = letters) #> $choices #>  [1] \"a\" \"b\" \"c\" \"d\" \"e\" \"f\" \"g\" \"h\" \"i\" \"j\" \"k\" \"l\" \"m\" \"n\" \"o\" \"p\" \"q\" \"r\" \"s\" #> [20] \"t\" \"u\" \"v\" \"w\" \"x\" \"y\" \"z\" #>  #> $selected #>  [1] \"a\" \"b\" \"c\" \"d\" \"e\" \"f\" \"g\" \"h\" \"i\" \"j\" \"k\" \"l\" \"m\" \"n\" \"o\" \"p\" \"q\" \"r\" \"s\" #> [20] \"t\" \"u\" \"v\" \"w\" \"x\" \"y\" \"z\" #>  #> $fixed #> [1] FALSE #>  #> attr(,\"class\") #> [1] \"choices_selected\"  choices_selected(   choices = stats::setNames(LETTERS[1:5], paste(\"Letter\", LETTERS[1:5])),   selected = \"C\" ) #> $choices #> Letter C Letter A Letter B Letter D Letter E  #>      \"C\"      \"A\"      \"B\"      \"D\"      \"E\"  #>  #> $selected #> [1] \"C\" #>  #> $fixed #> [1] FALSE #>  #> attr(,\"class\") #> [1] \"choices_selected\"  ADSL <- teal.transform::rADSL choices_selected(variable_choices(ADSL), \"SEX\") #> $choices #> number of choices: 55  #>  #> SEX: Sex #> STUDYID: Study Identifier #> USUBJID: Unique Subject Identifier #> SUBJID: Subject Identifier for the Study #> SITEID: Study Site Identifier #> AGE: Age #> AGEU: Age Units #> RACE: Race #> ETHNIC: Ethnicity #> COUNTRY: Country #> DTHFL: Subject Death Flag #> INVID: Investigator Identifier #> INVNAM: Investigator Name #> ARM: Description of Planned Arm #> ARMCD: Planned Arm Code #> ACTARM: Description of Actual Arm #> ACTARMCD: Actual Arm Code #> TRT01P: Planned Treatment for Period 01 #> TRT01A: Actual Treatment for Period 01 #> TRT02P: Planned Treatment for Period 02 #> TRT02A: Actual Treatment for Period 02 #> REGION1: Geographic Region 1 #> STRATA1: Stratification Factor 1 #> STRATA2: Stratification Factor 2 #> BMRKR1: Continuous Level Biomarker 1 #> BMRKR2: Categorical Level Biomarker 2 #> ITTFL: Intent-To-Treat Population Flag #> SAFFL: Safety Population Flag #> BMEASIFL: Response Evaluable Population Flag #> BEP01FL: Biomarker Evaluable Population Flag #> AEWITHFL: AE Leading to Drug Withdrawal Flag #> RANDDT: Date of Randomization #> TRTSDTM: Datetime of First Exposure to Treatment #> TRTEDTM: Datetime of Last Exposure to Treatment #> TRT01SDTM: Datetime of First Exposure to Treatment in Period 01 #> TRT01EDTM: Datetime of Last Exposure in Period 01 #> TRT02SDTM: Datetime of First Exposure to Treatment in Period 02 #> TRT02EDTM: Datetime of Last Exposure to Treatment in Period 02 #> AP01SDTM: Period 01 Start Datetime #> AP01EDTM: Period 01 End Datetime #> AP02SDTM: Period 02 Start Datetime #> AP02EDTM: Period 02 End Datetime #> EOSSTT: End of Study Status #> EOTSTT: End of Treatment Status #> EOSDT: End of Study Date #> EOSDY: End of Study Relative Day #> DCSREAS: Reason for Discontinuation from Study #> DTHDT: Date of Death #> DTHCAUS: Cause of Death #> DTHCAT: Cause of Death Category #> LDDTHELD: Elapsed Days from Last Dose to Death #> LDDTHGR1: Last Dose to Death - Days Elapsed Grp 1 #> LSTALVDT: Date Last Known Alive #> DTHADY: Relative Day of Death #> ADTHAUT: Autopsy Performed #>  #>  #> $selected #> [1] \"SEX\" #>  #> $fixed #> [1] FALSE #>  #> attr(,\"class\") #> [1] \"choices_selected\"  # How to select nothing # use an empty character choices_selected(   choices = c(\"\", \"A\", \"B\", \"C\"),   selected = \"\" ) #> $choices #> [1] \"\"  \"A\" \"B\" \"C\" #>  #> $selected #> [1] \"\" #>  #> $fixed #> [1] FALSE #>  #> attr(,\"class\") #> [1] \"choices_selected\"  # How to allow the user to select nothing # use an empty character choices_selected(   choices = c(\"A\", \"\", \"B\", \"C\"),   selected = \"A\" ) #> $choices #> [1] \"A\" \"\"  \"B\" \"C\" #>  #> $selected #> [1] \"A\" #>  #> $fixed #> [1] FALSE #>  #> attr(,\"class\") #> [1] \"choices_selected\"   # How to make Nothing the Xth choice # just use keep_order choices_selected(   choices = c(\"A\", \"\", \"B\", \"C\"),   selected = \"A\",   keep_order = TRUE ) #> $choices #> [1] \"A\" \"\"  \"B\" \"C\" #>  #> $selected #> [1] \"A\" #>  #> $fixed #> [1] FALSE #>  #> attr(,\"class\") #> [1] \"choices_selected\"   # How to give labels to selections # by adding names - choices will be replaced by \"name\" in UI, not in code choices_selected(   choices = c(\"name for A\" = \"A\", \"Name for nothing\" = \"\", \"name for b\" = \"B\", \"name for C\" = \"C\"),   selected = \"A\" ) #> $choices #>       name for A Name for nothing       name for b       name for C  #>              \"A\"               \"\"              \"B\"              \"C\"  #>  #> $selected #> [1] \"A\" #>  #> $fixed #> [1] FALSE #>  #> attr(,\"class\") #> [1] \"choices_selected\"  # by using choices_labeled # labels will be shown behind the choice choices_selected(   choices = choices_labeled(     c(\"A\", \"\", \"B\", \"C\"),     c(\"name for A\", \"nothing\", \"name for B\", \"name for C\")   ),   selected = \"A\" ) #> $choices #> number of choices: 4  #>  #> A: name for A #> : nothing #> B: name for B #> C: name for C #>  #>  #> $selected #> [1] \"A\" #>  #> $fixed #> [1] FALSE #>  #> attr(,\"class\") #> [1] \"choices_selected\"  # Passing a `delayed_data` object to `selected` choices_selected(   choices = variable_choices(\"ADSL\"),   selected = variable_choices(\"ADSL\", subset = c(\"STUDYID\")) ) #> choices_selected with delayed data:  ADSL #> $ choices #>   variable_choices with delayed data: ADSL #>   $ data #>   [1] \"ADSL\" #>   $ subset #>   NULL #>   $ key #>   NULL #> $ selected #>   variable_choices with delayed data: ADSL #>   $ data #>   [1] \"ADSL\" #>   $ subset #>   [1] \"STUDYID\" #>   $ key #>   NULL #> $ keep_order #> [1] FALSE #> $ fixed #> [1] FALSE  # functional form (subsetting for factor variables only) of choices_selected # with delayed data loading choices_selected(variable_choices(\"ADSL\", subset = function(data) {   idx <- vapply(data, is.factor, logical(1))   return(names(data)[idx]) })) #> choices_selected with delayed data:  ADSL #> $ choices #>   variable_choices with delayed data: ADSL #>   $ data #>   [1] \"ADSL\" #>   $ subset #>   function(data) { #>   idx <- vapply(data, is.factor, logical(1)) #>   return(names(data)[idx]) #> } #> <environment: 0x556c04669530> #>   $ key #>   NULL #> $ selected #> NULL #> $ keep_order #> [1] FALSE #> $ fixed #> [1] FALSE  cs <- choices_selected(   choices = c(\"A\", \"B\", \"C\"),   selected = \"A\" )  ui <- fluidPage(   teal.widgets::optionalSelectInput(     inputId = \"id\",     choices = cs$choices,     selected = cs$selected   ) ) if (FALSE) { shinyApp(ui, server = function(input, output, session) {}) }"},{"path":"https://insightsengineering.github.io/teal.transform/reference/compose_and_enable_validators.html","id":null,"dir":"Reference","previous_headings":"","what":"Function to compose validators from data_extract_multiple_srv — compose_and_enable_validators","title":"Function to compose validators from data_extract_multiple_srv — compose_and_enable_validators","text":"function takes output data_extract_multiple_srv collates shinyvalidate::InputValidators returned single validator enables ","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/compose_and_enable_validators.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Function to compose validators from data_extract_multiple_srv — compose_and_enable_validators","text":"","code":"compose_and_enable_validators(iv, selector_list, validator_names = NULL)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/compose_and_enable_validators.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Function to compose validators from data_extract_multiple_srv — compose_and_enable_validators","text":"iv (shinyvalidate::InputValidator) validator. selector_list (reactive named list reactives). Typically output data_extract_multiple_srv. validators list (specifically selector_list()[[validator_names]]()iv) added iv. validator_names (character NULL). character validators elements selector_list() whose name list added. NULL validators added","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/compose_and_enable_validators.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Function to compose validators from data_extract_multiple_srv — compose_and_enable_validators","text":"(shinyvalidate::InputValidator) enabled iv appropriate validators added .","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/compose_and_enable_validators.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Function to compose validators from data_extract_multiple_srv — compose_and_enable_validators","text":"","code":"library(shiny) library(shinyvalidate) library(shinyjs) #>  #> Attaching package: ‘shinyjs’ #> The following object is masked from ‘package:shiny’: #>  #>     runExample #> The following objects are masked from ‘package:methods’: #>  #>     removeClass, show library(teal.widgets)  iris_extract <- data_extract_spec(   dataname = \"iris\",   select = select_spec(     label = \"Select variable:\",     choices = variable_choices(iris, colnames(iris)),     selected = \"Sepal.Length\",     multiple = TRUE,     fixed = FALSE   ) )  data_list <- list(iris = reactive(iris))  app <- shinyApp(   ui = fluidPage(     useShinyjs(),     standard_layout(       output = verbatimTextOutput(\"out1\"),       encoding = tagList(         data_extract_ui(           id = \"x_var\",           label = \"Please select an X column\",           data_extract_spec = iris_extract         ),         data_extract_ui(           id = \"y_var\",           label = \"Please select a Y column\",           data_extract_spec = iris_extract         ),         data_extract_ui(           id = \"col_var\",           label = \"Please select a color column\",           data_extract_spec = iris_extract         )       )     )   ),   server = function(input, output, session) {     exactly_2_validation <- function() {       ~ if (length(.) != 2) \"Exactly 2 'Y' column variables must be chosen\"     }       selector_list <- data_extract_multiple_srv(       list(x_var = iris_extract, y_var = iris_extract, col_var = iris_extract),       datasets = data_list,       select_validation_rule = list(         x_var = sv_required(\"Please select an X column\"),         y_var = compose_rules(           sv_required(\"Exactly 2 'Y' column variables must be chosen\"),           exactly_2_validation()         )       )     )     iv_r <- reactive({       iv <- InputValidator$new()       compose_and_enable_validators(         iv,         selector_list,         # if validator_names = NULL then all validators are used         # to turn on only \"x_var\" then set this argument to \"x_var\"         validator_names = NULL       )     })      output$out1 <- renderPrint({       if (iv_r()$is_valid()) {         ans <- lapply(selector_list(), function(x) {           cat(format_data_extract(x()), \"\\n\\n\")         })       } else {         \"Check that you have made a valid selection\"       }     })   } ) if (interactive()) {   runApp(app) }"},{"path":"https://insightsengineering.github.io/teal.transform/reference/cond_data_extract_single_ui.html","id":null,"dir":"Reference","previous_headings":"","what":"Creates a panel that displays (with filter and column selection)\nconditionally on input[ns(","title":"Creates a panel that displays (with filter and column selection)\nconditionally on input[ns(","text":"Creates panel displays (filter column selection) conditionally input[ns(\"dataset\")] == dataname.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/cond_data_extract_single_ui.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Creates a panel that displays (with filter and column selection)\nconditionally on input[ns(","text":"","code":"cond_data_extract_single_ui(ns, single_data_extract_spec)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/cond_data_extract_single_ui.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Creates a panel that displays (with filter and column selection)\nconditionally on input[ns(","text":"ns (function) shiny namespace function single_data_extract_spec (data_extract_spec) specification extraction data application initialization. Generated data_extract_spec().","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/cond_data_extract_single_ui.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Creates a panel that displays (with filter and column selection)\nconditionally on input[ns(","text":"(shiny.tag) Shiny tag HTML code panel","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/cond_data_extract_single_ui.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Creates a panel that displays (with filter and column selection)\nconditionally on input[ns(","text":"","code":"teal.transform:::cond_data_extract_single_ui(   shiny::NS(\"TEST\"),   data_extract_spec(dataname = \"test\") ) #> <div data-display-if=\"input[&#39;TEST-dataset&#39;] == &#39;test&#39;\" data-ns-prefix=\"\"> #>   <div> #>     <div> #>       <div class=\"filter_spec\"> #>         <div class=\"form-group shiny-input-container\"> #>           <label class=\"control-label\" for=\"TEST-dataset_test_singleextract-filter1-col\">Filter by<\/label> #>           <select data-actions-box=\"false\" data-none-selected-text=\"- Nothing selected -\" data-max-options=\"1\" data-show-subtext=\"true\" data-live-search=\"false\" id=\"TEST-dataset_test_singleextract-filter1-col\" class=\"selectpicker form-control\" multiple=\"multiple\"> #>             <option value=\"test\" data-content=\"test\">test<\/option> #>           <\/select> #>         <\/div> #>         <div class=\"form-group shiny-input-container\"> #>           <label class=\"control-label shiny-label-null\" for=\"TEST-dataset_test_singleextract-filter1-vals\"><\/label> #>           <select data-actions-box=\"true\" data-none-selected-text=\"- Nothing selected -\" data-max-options=\"Inf\" data-show-subtext=\"true\" data-live-search=\"false\" id=\"TEST-dataset_test_singleextract-filter1-vals\" class=\"selectpicker form-control\" multiple=\"multiple\"><option value=\"\"><\/option><\/select> #>         <\/div> #>       <\/div> #>     <\/div> #>     <div class=\"form-group shiny-input-container\"> #>       <label class=\"control-label\" for=\"TEST-dataset_test_singleextract-select\">Select<\/label> #>       <select data-actions-box=\"true\" data-none-selected-text=\"- Nothing selected -\" data-max-options=\"Inf\" data-show-subtext=\"true\" data-live-search=\"false\" id=\"TEST-dataset_test_singleextract-select\" class=\"selectpicker form-control\" multiple=\"multiple\"> #>         <option value=\"test\" data-content=\"test\">test<\/option> #>       <\/select> #>     <\/div> #>     <div class=\"form-group shiny-input-container shinyjs-disabled shinyjs-hide\"> #>       <div class=\"checkbox\"> #>         <label> #>           <input id=\"TEST-dataset_test_singleextract-reshape\" type=\"checkbox\" class=\"shiny-input-checkbox\"/> #>           <span>Reshape long to wide format<\/span> #>         <\/label> #>       <\/div> #>     <\/div> #>   <\/div> #> <\/div>"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_filter_srv.html","id":null,"dir":"Reference","previous_headings":"","what":"Handles events emitted from the UI generated by data_extract_filter_ui. — data_extract_filter_srv","title":"Handles events emitted from the UI generated by data_extract_filter_ui. — data_extract_filter_srv","text":"Handles events emitted UI generated data_extract_filter_ui.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_filter_srv.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Handles events emitted from the UI generated by data_extract_filter_ui. — data_extract_filter_srv","text":"","code":"data_extract_filter_srv(id, datasets, filter)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_filter_srv.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Handles events emitted from the UI generated by data_extract_filter_ui. — data_extract_filter_srv","text":"id (character) id string datasets (named list) list reactive data.frame type objects. filter (filter_spec) filter generated call filter_spec()","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_filter_srv.html","id":"note","dir":"Reference","previous_headings":"","what":"Note","title":"Handles events emitted from the UI generated by data_extract_filter_ui. — data_extract_filter_srv","text":"shiny module server updates values vals teal.widgets::optionalSelectInput() widget. responsible setting initial values subsequent updates vals widget based input col widget.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_filter_ui.html","id":null,"dir":"Reference","previous_headings":"","what":"Returns a shiny.tag object with the UI for a filter_spec object — data_extract_filter_ui","title":"Returns a shiny.tag object with the UI for a filter_spec object — data_extract_filter_ui","text":"Returns shiny.tag object UI filter_spec object","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_filter_ui.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Returns a shiny.tag object with the UI for a filter_spec object — data_extract_filter_ui","text":"","code":"data_extract_filter_ui(filter, id = \"filter\")"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_filter_ui.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Returns a shiny.tag object with the UI for a filter_spec object — data_extract_filter_ui","text":"filter (filter_spec) object generated filter_spec() id (character(1)) shiny inputId generated shiny.tag","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_filter_ui.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Returns a shiny.tag object with the UI for a filter_spec object — data_extract_filter_ui","text":"shiny.tag defining filter_spec's UI element","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_filter_ui.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Returns a shiny.tag object with the UI for a filter_spec object — data_extract_filter_ui","text":"Creates two optionSelectInput elements (one column one values) based definition filter_spec() object.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_filter_ui.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Returns a shiny.tag object with the UI for a filter_spec object — data_extract_filter_ui","text":"","code":"teal.transform:::data_extract_filter_ui(filter = filter_spec(vars = \"test_var\"), id = \"test_id\") #> <div class=\"filter_spec\"> #>   <div class=\"shinyjs-hide\"> #>     <div class=\"form-group shiny-input-container shinyjs-hide\"> #>       <label class=\"control-label shiny-label-null\" for=\"test_id-col\"><\/label> #>       <select data-actions-box=\"true\" data-none-selected-text=\"- Nothing selected -\" data-max-options=\"Inf\" data-show-subtext=\"true\" data-live-search=\"false\" id=\"test_id-col\" class=\"selectpicker form-control\" multiple=\"multiple\"><option value=\"test_var\" selected>test_var<\/option><\/select> #>     <\/div> #>     <label id=\"test_id-col_textonly\" class=\"control-label\"><\/label> #>     <code id=\"test_id-col_valueonly\">test_var<\/code> #>   <\/div> #>   <div class=\"form-group shiny-input-container\"> #>     <label class=\"control-label\" for=\"test_id-vals\">Filter by<\/label> #>     <select data-actions-box=\"false\" data-none-selected-text=\"- Nothing selected -\" data-max-options=\"1\" data-show-subtext=\"true\" data-live-search=\"false\" id=\"test_id-vals\" class=\"selectpicker form-control\" multiple=\"multiple\"><option value=\"\"><\/option><\/select> #>   <\/div> #> <\/div>"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_multiple_srv.html","id":null,"dir":"Reference","previous_headings":"","what":"Creates a named list of data_extract_srv output — data_extract_multiple_srv","title":"Creates a named list of data_extract_srv output — data_extract_multiple_srv","text":"data_extract_multiple_srv loops list data_extract given runs data_extract_srv one returning list reactive objects. suitable input (deprecated) data_merge_srv().","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_multiple_srv.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Creates a named list of data_extract_srv output — data_extract_multiple_srv","text":"","code":"data_extract_multiple_srv(data_extract, datasets, ...)  # S3 method for FilteredData data_extract_multiple_srv(data_extract, datasets, ...)  # S3 method for list data_extract_multiple_srv(   data_extract,   datasets,   join_keys = NULL,   select_validation_rule = NULL,   filter_validation_rule = NULL,   dataset_validation_rule = if (is.null(select_validation_rule) &&     is.null(filter_validation_rule)) {      NULL  } else {          shinyvalidate::sv_required(\"Please select a dataset\")  },   ... )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_multiple_srv.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Creates a named list of data_extract_srv output — data_extract_multiple_srv","text":"data_extract (named list data_extract_spec objects) list data_extract_spec objects. names elements list need correspond ids passed data_extract_ui. See example details. datasets (FilteredData list reactive non-reactive data.frame) object containing data either form teal.slice::FilteredData list data.frame. passing list non-reactive data.frame objects, converted reactive data.frames internally. passing list reactive non-reactive data.frame objects, argument join_keys required also. ... additional argument join_keys required datasets list data.frame. shall contain keys per dataset datasets. join_keys (JoinKeys NULL) join keys per dataset datasets. select_validation_rule (NULL, function named list function) shinyvalidate input validation select parts data_extract_ui data_extract require validation function can used directly ( .e. select_validation_rule = shinyvalidate::sv_required()). fine-grained control use list: select_validation_rule = list(extract_1 = sv_required(), extract2 = ~ (length(.) > 2) \"Error\"). NULL validation added. See example details. filter_validation_rule (NULL, function named list function) select_validation_rule filter (values) part data_extract_ui. dataset_validation_rule (NULL, function named list function) select_validation_rule choose dataset part data_extract_ui","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_multiple_srv.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Creates a named list of data_extract_srv output — data_extract_multiple_srv","text":"reactive named list containing outputs data_extract_srv(). Output list names data_extract input argument.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_multiple_srv.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Creates a named list of data_extract_srv output — data_extract_multiple_srv","text":"","code":"library(shiny) library(shinyvalidate) library(shinyjs) library(teal.widgets)  iris_select <- data_extract_spec(   dataname = \"iris\",   select = select_spec(     label = \"Select variable:\",     choices = variable_choices(iris, colnames(iris)),     selected = \"Sepal.Length\",     multiple = TRUE,     fixed = FALSE   ) )  iris_filter <- data_extract_spec(   dataname = \"iris\",   filter = filter_spec(     vars = \"Species\",     choices = c(\"setosa\", \"versicolor\", \"virginica\"),     selected = \"setosa\",     multiple = TRUE   ) )  data_list <- list(iris = reactive(iris))  app <- shinyApp(   ui = fluidPage(     useShinyjs(),     standard_layout(       output = verbatimTextOutput(\"out1\"),       encoding = tagList(         data_extract_ui(           id = \"x_var\",           label = \"Please select an X column\",           data_extract_spec = iris_select         ),         data_extract_ui(           id = \"species_var\",           label = \"Please select 2 Species\",           data_extract_spec = iris_filter         )       )     )   ),   server = function(input, output, session) {     exactly_2_validation <- function(msg) {       ~ if (length(.) != 2) msg     }       selector_list <- data_extract_multiple_srv(       list(x_var = iris_select, species_var = iris_filter),       datasets = data_list,       select_validation_rule = list(         x_var = sv_required(\"Please select an X column\")       ),       filter_validation_rule = list(         species_var = compose_rules(           sv_required(\"Exactly 2 Species must be chosen\"),           exactly_2_validation(\"Exactly 2 Species must be chosen\")         )       )     )     iv_r <- reactive({       iv <- InputValidator$new()       compose_and_enable_validators(         iv,         selector_list,         validator_names = NULL       )     })      output$out1 <- renderPrint({       if (iv_r()$is_valid()) {         ans <- lapply(selector_list(), function(x) {           cat(format_data_extract(x()), \"\\n\\n\")         })       } else {         \"Please fix errors in your selection\"       }     })   } ) if (interactive()) {   runApp(app) }"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_read_srv.html","id":null,"dir":"Reference","previous_headings":"","what":"Returns a reactive list with values read from the inputs of data_extract_spec — data_extract_read_srv","title":"Returns a reactive list with values read from the inputs of data_extract_spec — data_extract_read_srv","text":"Returns reactive list values read inputs data_extract_spec","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_read_srv.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Returns a reactive list with values read from the inputs of data_extract_spec — data_extract_read_srv","text":"","code":"data_extract_read_srv(   id,   datasets,   single_data_extract_spec,   iv,   select_validation_rule = NULL,   filter_validation_rule = NULL )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_read_srv.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Returns a reactive list with values read from the inputs of data_extract_spec — data_extract_read_srv","text":"id (character) id string datasets (named list) list reactive data.frame type objects. single_data_extract_spec (data_extract_spec) data_extract_spec() object handle.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_read_srv.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Returns a reactive list with values read from the inputs of data_extract_spec — data_extract_read_srv","text":"shiny::reactive reactive list reactive values read UI","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_read_srv.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Returns a reactive list with values read from the inputs of data_extract_spec — data_extract_read_srv","text":"Reads UI inputs single data_extract_spec object running teal application. Returns reactive list reactive values read input. returned list keys corresponding UI inputs: select, filters, always_selected, reshape.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_select_ui.html","id":null,"dir":"Reference","previous_headings":"","what":"Returns a shiny.tag.list object with the UI for a select_spec object — data_extract_select_ui","title":"Returns a shiny.tag.list object with the UI for a select_spec object — data_extract_select_ui","text":"Returns shiny.tag.list object UI select_spec object","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_select_ui.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Returns a shiny.tag.list object with the UI for a select_spec object — data_extract_select_ui","text":"","code":"data_extract_select_ui(select, id = \"select\")"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_select_ui.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Returns a shiny.tag.list object with the UI for a select_spec object — data_extract_select_ui","text":"select (select_spec) definition select spec element. Setting select_spec() ordered = TRUE makes selector responsive variable selection order. id (character(1)) shiny inputId element","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_select_ui.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Returns a shiny.tag.list object with the UI for a select_spec object — data_extract_select_ui","text":"shiny.tag.list UI","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_select_ui.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Returns a shiny.tag.list object with the UI for a select_spec object — data_extract_select_ui","text":"","code":"teal.transform:::data_extract_select_ui(   select = select_spec(choices = \"test_choice\"),   id = \"test_id\" ) #> <div class=\"form-group shiny-input-container\"> #>   <label class=\"control-label\" for=\"test_id\">Select<\/label> #>   <select data-actions-box=\"false\" data-none-selected-text=\"- Nothing selected -\" data-max-options=\"1\" data-show-subtext=\"true\" data-live-search=\"false\" id=\"test_id\" class=\"selectpicker form-control\" multiple=\"multiple\"><option value=\"test_choice\" selected>test_choice<\/option><\/select> #> <\/div>"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_single_srv.html","id":null,"dir":"Reference","previous_headings":"","what":"The server function for a single data_extract_spec object — data_extract_single_srv","title":"The server function for a single data_extract_spec object — data_extract_single_srv","text":"server function single data_extract_spec object","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_single_srv.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"The server function for a single data_extract_spec object — data_extract_single_srv","text":"","code":"data_extract_single_srv(id, datasets, single_data_extract_spec)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_single_srv.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"The server function for a single data_extract_spec object — data_extract_single_srv","text":"id (character) id string datasets (named list) list reactive data.frame type objects. single_data_extract_spec (data_extract_spec) data_extract_spec() object handle.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_single_srv.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"The server function for a single data_extract_spec object — data_extract_single_srv","text":"NULL","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_single_srv.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"The server function for a single data_extract_spec object — data_extract_single_srv","text":"Shiny server function handling single data_extract_spec object.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_single_ui.html","id":null,"dir":"Reference","previous_headings":"","what":"Returns a shiny.tag with the UI elements for a data_extract_spec — data_extract_single_ui","title":"Returns a shiny.tag with the UI elements for a data_extract_spec — data_extract_single_ui","text":"Returns shiny.tag UI elements data_extract_spec","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_single_ui.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Returns a shiny.tag with the UI elements for a data_extract_spec — data_extract_single_ui","text":"","code":"data_extract_single_ui(id = NULL, single_data_extract_spec)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_single_ui.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Returns a shiny.tag with the UI elements for a data_extract_spec — data_extract_single_ui","text":"id (character(1)) id module single_data_extract_spec (data_extract_spec) data_extract_spec() object handle.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_single_ui.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Returns a shiny.tag with the UI elements for a data_extract_spec — data_extract_single_ui","text":"shiny.tag HTML element defining UI","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_single_ui.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Returns a shiny.tag with the UI elements for a data_extract_spec — data_extract_single_ui","text":"Creates shiny.tag element defining UI elements corresponding single data_extract_spec object.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_single_ui.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Returns a shiny.tag with the UI elements for a data_extract_spec — data_extract_single_ui","text":"","code":"teal.transform:::data_extract_single_ui(id = \"test\", data_extract_spec(\"extract\")) #> <div> #>   <div> #>     <div class=\"filter_spec\"> #>       <div class=\"form-group shiny-input-container\"> #>         <label class=\"control-label\" for=\"test-filter1-col\">Filter by<\/label> #>         <select data-actions-box=\"false\" data-none-selected-text=\"- Nothing selected -\" data-max-options=\"1\" data-show-subtext=\"true\" data-live-search=\"false\" id=\"test-filter1-col\" class=\"selectpicker form-control\" multiple=\"multiple\"> #>           <option value=\"extract\" data-content=\"extract\">extract<\/option> #>         <\/select> #>       <\/div> #>       <div class=\"form-group shiny-input-container\"> #>         <label class=\"control-label shiny-label-null\" for=\"test-filter1-vals\"><\/label> #>         <select data-actions-box=\"true\" data-none-selected-text=\"- Nothing selected -\" data-max-options=\"Inf\" data-show-subtext=\"true\" data-live-search=\"false\" id=\"test-filter1-vals\" class=\"selectpicker form-control\" multiple=\"multiple\"><option value=\"\"><\/option><\/select> #>       <\/div> #>     <\/div> #>   <\/div> #>   <div class=\"form-group shiny-input-container\"> #>     <label class=\"control-label\" for=\"test-select\">Select<\/label> #>     <select data-actions-box=\"true\" data-none-selected-text=\"- Nothing selected -\" data-max-options=\"Inf\" data-show-subtext=\"true\" data-live-search=\"false\" id=\"test-select\" class=\"selectpicker form-control\" multiple=\"multiple\"> #>       <option value=\"extract\" data-content=\"extract\">extract<\/option> #>     <\/select> #>   <\/div> #>   <div class=\"form-group shiny-input-container shinyjs-disabled shinyjs-hide\"> #>     <div class=\"checkbox\"> #>       <label> #>         <input id=\"test-reshape\" type=\"checkbox\" class=\"shiny-input-checkbox\"/> #>         <span>Reshape long to wide format<\/span> #>       <\/label> #>     <\/div> #>   <\/div> #> <\/div>"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_spec.html","id":null,"dir":"Reference","previous_headings":"","what":"Data Extract input for teal modules — data_extract_spec","title":"Data Extract input for teal modules — data_extract_spec","text":"Data Extract input can used filter select columns data set. function enables input teal. Please use constructor function data_extract_spec set . Note checks based columns can done data referred name.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_spec.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data Extract input for teal modules — data_extract_spec","text":"","code":"data_extract_spec(dataname, select = NULL, filter = NULL, reshape = FALSE)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_spec.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data Extract input for teal modules — data_extract_spec","text":"dataname (character) name dataset extracted. select (NULL, select_spec-S3 class delayed_select_spec) Columns selected input dataset mentioned dataname. setup can created using select_spec function. filter (NULL filter_spec respective delayed version) Setup filtering key columns inside dataset. setup can created using filter_spec function. Please note select filter set NULL, result filter spec UI variables possible choices select spec multiple set TRUE. reshape (logical) whether reshape long wide. Note used case long dataset multiple keys selected filter part.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_spec.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Data Extract input for teal modules — data_extract_spec","text":"select_spec filter_spec","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_spec.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Data Extract input for teal modules — data_extract_spec","text":"","code":"adtte_filters <- filter_spec(   vars = c(\"PARAMCD\", \"CNSR\"),   sep = \"-\",   choices = c(\"OS-1\" = \"OS-1\", \"OS-0\" = \"OS-0\", \"PFS-1\" = \"PFS-1\"),   selected = \"OS-1\",   multiple = FALSE,   label = \"Choose endpoint and Censor\" )  data_extract_spec(   dataname = \"ADTTE\",   filter = adtte_filters,   select = select_spec(     choices = c(\"AVAL\", \"BMRKR1\", \"AGE\"),     selected = c(\"AVAL\", \"BMRKR1\"),     multiple = TRUE,     fixed = FALSE,     label = \"Column\"   ) ) #> $dataname #> [1] \"ADTTE\" #>  #> $select #> $choices #>     AVAL   BMRKR1      AGE  #>   \"AVAL\" \"BMRKR1\"    \"AGE\"  #>  #> $selected #>     AVAL   BMRKR1  #>   \"AVAL\" \"BMRKR1\"  #>  #> $multiple #> [1] TRUE #>  #> $fixed #> [1] FALSE #>  #> $always_selected #> NULL #>  #> $ordered #> [1] FALSE #>  #> $label #> [1] \"Column\" #>  #> attr(,\"class\") #> [1] \"select_spec\" #>  #> $filter #> $filter[[1]] #> filter_spec with delayed data: #> $ vars_choices #> [1] \"PARAMCD\" \"CNSR\"    #> $ vars_selected #> [1] \"PARAMCD\" \"CNSR\"    #> $ vars_label #> NULL #> $ vars_fixed #> [1] TRUE #> $ vars_multiple #> [1] TRUE #> $ choices #>    OS-1    OS-0   PFS-1  #>  \"OS-1\"  \"OS-0\" \"PFS-1\"  #> $ selected #> [1] \"OS-1\" #> $ label #> [1] \"Choose endpoint and Censor\" #> $ multiple #> [1] FALSE #> $ fixed #> [1] FALSE #> $ sep #> [1] \"-\" #> $ drop_keys #> [1] FALSE #> $ dataname #> [1] \"ADTTE\" #> $ initialized #> [1] FALSE #>  #>  #> $reshape #> [1] FALSE #>  #> attr(,\"class\") #> [1] \"data_extract_spec\"  data_extract_spec(   dataname = \"ADSL\",   filter = NULL,   select = select_spec(     choices = c(\"AGE\", \"SEX\", \"USUBJID\"),     selected = c(\"SEX\"),     multiple = FALSE,     fixed = FALSE   ) ) #> $dataname #> [1] \"ADSL\" #>  #> $select #> $choices #>       AGE       SEX   USUBJID  #>     \"AGE\"     \"SEX\" \"USUBJID\"  #>  #> $selected #>   SEX  #> \"SEX\"  #>  #> $multiple #> [1] FALSE #>  #> $fixed #> [1] FALSE #>  #> $always_selected #> NULL #>  #> $ordered #> [1] FALSE #>  #> $label #> [1] \"Select\" #>  #> attr(,\"class\") #> [1] \"select_spec\" #>  #> $filter #> NULL #>  #> $reshape #> [1] FALSE #>  #> attr(,\"class\") #> [1] \"data_extract_spec\" data_extract_spec(   dataname = \"ADSL\",   filter = filter_spec(     vars = variable_choices(\"ADSL\", subset = c(\"AGE\"))   ) ) #> data_extract_spec with delayed data: ADSL #>  #> $ dataname #> [1] \"ADSL\" #> $ select #> NULL #> $ filter #>   [[1]] #>     filter_spec with delayed data: #>     $ vars_choices #>       variable_choices with delayed data: ADSL #>       $ data #>       [1] \"ADSL\" #>       $ subset #>       [1] \"AGE\" #>       $ key #>       NULL #>     $ vars_selected #>       variable_choices with delayed data: ADSL #>       $ data #>       [1] \"ADSL\" #>       $ subset #>       [1] \"AGE\" #>       $ key #>       NULL #>     $ vars_label #>     NULL #>     $ vars_fixed #>     [1] TRUE #>     $ vars_multiple #>     [1] TRUE #>     $ choices #>     NULL #>     $ selected #>     NULL #>     $ label #>     [1] \"Filter by\" #>     $ multiple #>     [1] FALSE #>     $ fixed #>     [1] FALSE #>     $ sep #>     [1] \" - \" #>     $ drop_keys #>     [1] FALSE #>     $ dataname #>     [1] \"ADSL\" #>     $ initialized #>     [1] FALSE #> $ reshape #> [1] FALSE  dynamic_filter <- filter_spec(   vars = choices_selected(variable_choices(\"ADSL\"), \"COUNTRY\"),   multiple = TRUE ) data_extract_spec(   dataname = \"ADSL\",   filter = dynamic_filter ) #> data_extract_spec with delayed data: ADSL #>  #> $ dataname #> [1] \"ADSL\" #> $ select #> NULL #> $ filter #>   [[1]] #>     filter_spec with delayed data: #>     $ vars_choices #>       variable_choices with delayed data: ADSL #>       $ data #>       [1] \"ADSL\" #>       $ subset #>       NULL #>       $ key #>       NULL #>     $ vars_selected #>     [1] \"COUNTRY\" #>     $ vars_label #>     [1] \"Filter by\" #>     $ vars_fixed #>     [1] FALSE #>     $ vars_multiple #>     [1] FALSE #>     $ choices #>     NULL #>     $ selected #>     NULL #>     $ label #>     NULL #>     $ multiple #>     [1] TRUE #>     $ fixed #>     [1] FALSE #>     $ sep #>     [1] \" - \" #>     $ drop_keys #>     [1] FALSE #>     $ dataname #>     [1] \"ADSL\" #>     $ initialized #>     [1] FALSE #> $ reshape #> [1] FALSE"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_srv.html","id":null,"dir":"Reference","previous_headings":"","what":"Extraction of the selector(s) details — data_extract_srv","title":"Extraction of the selector(s) details — data_extract_srv","text":"Extracting details selection(s) data_extract_ui elements.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_srv.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Extraction of the selector(s) details — data_extract_srv","text":"","code":"data_extract_srv(id, datasets, data_extract_spec, ...)  # S3 method for FilteredData data_extract_srv(id, datasets, data_extract_spec, ...)  # S3 method for list data_extract_srv(   id,   datasets,   data_extract_spec,   join_keys = NULL,   select_validation_rule = NULL,   filter_validation_rule = NULL,   dataset_validation_rule = if (is.null(select_validation_rule) &&     is.null(filter_validation_rule)) {      NULL  } else {          shinyvalidate::sv_required(\"Please select a dataset\")  },   ... )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_srv.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Extraction of the selector(s) details — data_extract_srv","text":"id ID string corresponds ID used call module's UI function. datasets (FilteredData list reactive non-reactive data.frame) object containing data either form teal.slice::FilteredData list data.frame. passing list non-reactive data.frame objects, converted reactive data.frames internally. passing list reactive non-reactive data.frame objects, argument join_keys required also. data_extract_spec (data_extract_spec list data_extract_spec) list data filter select information constructed data_extract_spec. ... additional argument join_keys required datasets list data.frame. shall contain keys per dataset datasets. join_keys (JoinKeys NULL) keys per dataset datasets select_validation_rule (NULL function) shinyvalidate input validation select parts data_extract_ui. can use validation function directly (.e. select_validation_rule = shinyvalidate::sv_required()) fine-grained control use function: select_validation_rule = ~ (length(.) > 2) \"Error\". NULL validation added. See example details. filter_validation_rule (NULL function) select_validation_rule filter (values) part data_extract_ui. dataset_validation_rule (NULL function) select_validation_rule choose dataset part data_extract_ui","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_srv.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Extraction of the selector(s) details — data_extract_srv","text":"reactive list containing following fields: filters: list information filters applied data set. select: variables selected dataset. always_selected: column names data set always selected. reshape: Whether reshape long wide applied . dataname: name data set. internal_id: id corresponding shiny input element. keys: names columns can used merge data set. iv:shinyvalidate::InputValidator containing validator data_extract","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_srv.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Extraction of the selector(s) details — data_extract_srv","text":"data_extract_srv","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_srv.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Extraction of the selector(s) details — data_extract_srv","text":"","code":"library(shiny) library(shinyvalidate)  ADSL <- data.frame(   STUDYID = \"A\",   USUBJID = LETTERS[1:10],   SEX = rep(c(\"F\", \"M\"), 5),   AGE = rpois(10, 30),   BMRKR1 = rlnorm(10) )  adsl_extract <- data_extract_spec(   dataname = \"ADSL\",   filter = filter_spec(vars = \"SEX\", choices = c(\"F\", \"M\"), selected = \"F\"),   select = select_spec(     label = \"Select variable:\",     choices = variable_choices(ADSL, c(\"AGE\", \"BMRKR1\")),     selected = \"AGE\",     multiple = TRUE,     fixed = FALSE   ) )  # Using reactive list of data.frames data_list <- list(ADSL = reactive(ADSL))  join_keys <- teal.data::join_keys(teal.data::join_key(\"ADSL\", \"ADSL\", c(\"STUDYID\", \"USUBJID\")))  app <- shinyApp(   ui = fluidPage(     teal.widgets::standard_layout(       output = verbatimTextOutput(\"out1\"),       encoding = tagList(         data_extract_ui(           id = \"adsl_var\",           label = \"ADSL selection\",           data_extract_spec = adsl_extract         )       )     )   ),   server = function(input, output, session) {     adsl_reactive_input <- data_extract_srv(       id = \"adsl_var\",       datasets = data_list,       data_extract_spec = adsl_extract,       join_keys = join_keys,       select_validation_rule = sv_required(\"Please select a variable.\")     )      iv_r <- reactive({       iv <- InputValidator$new()       iv$add_validator(adsl_reactive_input()$iv)       iv$enable()       iv     })      output$out1 <- renderPrint({       if (iv_r()$is_valid()) {         cat(format_data_extract(adsl_reactive_input()))       } else {         \"Please fix errors in your selection\"       }     })   } ) if (interactive()) {   runApp(app) }  # Using FilteredData - Note this method will be deprecated datasets <- teal.slice::init_filtered_data(   list(ADSL = list(dataset = ADSL)),   join_keys = teal.data::join_keys(     teal.data::join_key(\"ADSL\", \"ADSL\", c(\"USUBJID\", \"STUDYID\"))   ) )  app <- shinyApp(   ui = fluidPage(     teal.widgets::standard_layout(       output = verbatimTextOutput(\"out1\"),       encoding = tagList(         data_extract_ui(           id = \"adsl_var\",           label = \"ADSL selection\",           data_extract_spec = adsl_extract         )       )     )   ),   server = function(input, output, session) {     adsl_reactive_input <- data_extract_srv(       id = \"adsl_var\",       datasets = datasets,       data_extract_spec = adsl_extract     )      output$out1 <- renderPrint(adsl_reactive_input())   } ) if (interactive()) {   runApp(app) }"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_ui.html","id":null,"dir":"Reference","previous_headings":"","what":"teal data extraction module user-interface — data_extract_ui","title":"teal data extraction module user-interface — data_extract_ui","text":"functionality used encoding panel teal app. allow app-developers specify data_extract_spec object. object used teal module variables filtered data CDISC datasets. can use function way shiny module UI. corresponding server module can found data_extract_srv().","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_ui.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"teal data extraction module user-interface — data_extract_ui","text":"","code":"data_extract_ui(id, label, data_extract_spec, is_single_dataset = FALSE)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_ui.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"teal data extraction module user-interface — data_extract_ui","text":"id (character) shiny input unique identifier label (character) Label data extract input data_extract_spec (list data_extract_spec) outcome listing data_extract_spec constructor calls. is_single_dataset (logical) FALSE display dataset widget","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_ui.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"teal data extraction module user-interface — data_extract_ui","text":"shiny shiny::selectInputs allow define extract data specific dataset. input elements returned inside shiny::div container. three inputs rendered Dataset select Optional. one data_extract_spec handed function, shiny shiny::selectInput rendered. Else just name dataset given. Filter Panel Optional. data_extract_spec contains filter element shiny shiny::selectInput rendered options filter dataset. Select panel shiny shiny::selectInput select columns dataset go analysis. output can analyzed using data_extract_srv(...).","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_ui.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"teal data extraction module user-interface — data_extract_ui","text":"","code":"library(shiny)  adtte_filters <- filter_spec(   vars = c(\"PARAMCD\", \"CNSR\"),   sep = \"-\",   choices = c(\"OS-1\" = \"OS-1\", \"OS-0\" = \"OS-0\", \"PFS-1\" = \"PFS-1\"),   selected = \"OS-1\",   multiple = FALSE,   label = \"Choose endpoint and Censor\" )  response_spec <- data_extract_spec(   dataname = \"ADTTE\",   filter = adtte_filters,   select = select_spec(     choices = c(\"AVAL\", \"BMRKR1\", \"AGE\"),     selected = c(\"AVAL\", \"BMRKR1\"),     multiple = TRUE,     fixed = FALSE,     label = \"Column\"   ) ) # Call to use inside your teal module UI function teal.widgets::standard_layout(   output = tableOutput(\"table\"),   encoding = div(     data_extract_ui(       id = \"regressor\",       label = \"Regressor Variable\",       data_extract_spec = response_spec     )   ) ) #> <div class=\"row\"> #>   <div class=\"col-md-3\"> #>     <div class=\"well\"> #>       <div> #>         <style type=\"text/css\">/* teal.transform data_extract css */ #>  #> .data-extract { #>   border-left: 3px solid #e3e3e3; #>   padding-left: 0.6em; #>   border-radius: 5px; #>   margin-left: -0.6em; #>   margin-bottom: 1em; #> } #>  #> .data-extract label.control-label { #>   font-weight: normal; #>   color: grey; #> } #>  #> .data-extract .filter_spec > div:first-child { #>   margin-bottom: 5px; #> }<\/style> #>         <div class=\"data-extract\"> #>           <label>Regressor Variable<\/label> #>           <span class=\"help-block\"> #>             Dataset: #>             <code>ADTTE<\/code> #>           <\/span> #>           <div> #>             <div> #>               <div class=\"filter_spec\"> #>                 <div class=\"shinyjs-hide\"> #>                   <div class=\"form-group shiny-input-container shinyjs-hide\"> #>                     <label class=\"control-label shiny-label-null\" for=\"regressor-dataset_ADTTE_singleextract-filter1-col\"><\/label> #>                     <select data-actions-box=\"true\" data-none-selected-text=\"- Nothing selected -\" data-max-options=\"Inf\" data-show-subtext=\"true\" data-live-search=\"false\" id=\"regressor-dataset_ADTTE_singleextract-filter1-col\" class=\"selectpicker form-control\" multiple=\"multiple\"><option value=\"PARAMCD\" selected>PARAMCD<\/option> #> <option value=\"CNSR\" selected>CNSR<\/option><\/select> #>                   <\/div> #>                   <label id=\"regressor-dataset_ADTTE_singleextract-filter1-col_textonly\" class=\"control-label\"><\/label> #>                   <code id=\"regressor-dataset_ADTTE_singleextract-filter1-col_valueonly\">PARAMCD, CNSR<\/code> #>                 <\/div> #>                 <div class=\"form-group shiny-input-container\"> #>                   <label class=\"control-label\" for=\"regressor-dataset_ADTTE_singleextract-filter1-vals\">Choose endpoint and Censor<\/label> #>                   <select data-actions-box=\"false\" data-none-selected-text=\"- Nothing selected -\" data-max-options=\"1\" data-show-subtext=\"true\" data-live-search=\"false\" id=\"regressor-dataset_ADTTE_singleextract-filter1-vals\" class=\"selectpicker form-control\" multiple=\"multiple\"><option value=\"OS-1\" selected>OS-1<\/option> #> <option value=\"OS-0\">OS-0<\/option> #> <option value=\"PFS-1\">PFS-1<\/option><\/select> #>                 <\/div> #>               <\/div> #>             <\/div> #>             <div class=\"form-group shiny-input-container\"> #>               <label class=\"control-label\" for=\"regressor-dataset_ADTTE_singleextract-select\">Column<\/label> #>               <select data-actions-box=\"true\" data-none-selected-text=\"- Nothing selected -\" data-max-options=\"Inf\" data-show-subtext=\"true\" data-live-search=\"false\" id=\"regressor-dataset_ADTTE_singleextract-select\" class=\"selectpicker form-control\" multiple=\"multiple\"><option value=\"AVAL\" selected>AVAL<\/option> #> <option value=\"BMRKR1\" selected>BMRKR1<\/option> #> <option value=\"AGE\">AGE<\/option><\/select> #>             <\/div> #>             <div class=\"form-group shiny-input-container shinyjs-disabled shinyjs-hide\"> #>               <div class=\"checkbox\"> #>                 <label> #>                   <input id=\"regressor-dataset_ADTTE_singleextract-reshape\" type=\"checkbox\" class=\"shiny-input-checkbox\"/> #>                   <span>Reshape long to wide format<\/span> #>                 <\/label> #>               <\/div> #>             <\/div> #>           <\/div> #>         <\/div> #>       <\/div> #>     <\/div> #>   <\/div> #>   <div class=\"col-md-9\"> #>     <div class=\"well\"> #>       <div class=\"pre-output\"><\/div> #>       <div class=\"output\"> #>         <div id=\"table\" class=\"shiny-html-output\"><\/div> #>       <\/div> #>       <div class=\"post-output\"><\/div> #>     <\/div> #>   <\/div> #> <\/div>"},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_merge_module.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data merge module — data_merge_module","text":"","code":"data_merge_module(   datasets,   data_extract,   merge_function = \"dplyr::full_join\",   anl_name = \"ANL\",   id = \"merge_id\" )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_merge_module.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data merge module — data_merge_module","text":"datasets (FilteredData) object containing data, see teal.slice::FilteredData . data_extract (named list data_extract_spec) merge_function (character(1)) character string function accepts arguments x, y perform merging datasets. anl_name (character(1)) Name analysis dataset. id ID string corresponds ID used call module's UI function.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_merge_module.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data merge module — data_merge_module","text":"reactive expression output data_merge_srv().","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_merge_module.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Data merge module — data_merge_module","text":"function convenient wrapper combine data_extract_multiple_srv() data_merge_srv() additional processing required.","code":""},{"path":[]},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_merge_srv.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data merge module server — data_merge_srv","text":"","code":"data_merge_srv(   id = \"merge_id\",   selector_list,   datasets,   merge_function = \"dplyr::full_join\",   anl_name = \"ANL\" )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_merge_srv.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data merge module server — data_merge_srv","text":"id ID string corresponds ID used call module's UI function. selector_list (reactive) output data_extract_multiple_srv() reactive named list outputs data_extract_srv(). using reactive named list, names must identical shiny ids respective data_extract_ui(). datasets (FilteredData) object containing data (see teal.slice::FilteredData). merge_function (character(1) reactive) character string function accepts arguments x, y perform merging datasets. anl_name (character(1)) Name analysis dataset.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_merge_srv.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data merge module server — data_merge_srv","text":"reactive expression output merge_datasets.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_merge_srv.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Data merge module server — data_merge_srv","text":"additional processing data_extract list input required, data_merge_srv() combined data_extract_multiple_srv() data_extract_srv() influence selector_list input.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/datanames_input.html","id":null,"dir":"Reference","previous_headings":"","what":"Available datasets input — datanames_input","title":"Available datasets input — datanames_input","text":"Creates helpText names datasets available current module.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/datanames_input.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Available datasets input — datanames_input","text":"","code":"datanames_input(data_extracts)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/datanames_input.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Available datasets input — datanames_input","text":"data_extracts list data extracts single variable","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/extract_choices_labels.html","id":null,"dir":"Reference","previous_headings":"","what":"Extract labels from choices basing on attributes and names — extract_choices_labels","title":"Extract labels from choices basing on attributes and names — extract_choices_labels","text":"Extract labels choices basing attributes names","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/extract_choices_labels.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Extract labels from choices basing on attributes and names — extract_choices_labels","text":"","code":"extract_choices_labels(choices, values = NULL)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/extract_choices_labels.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Extract labels from choices basing on attributes and names — extract_choices_labels","text":"choices (list vector) select choices values optional, choices subset labels extracted, NULL choices","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/extract_choices_labels.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Extract labels from choices basing on attributes and names — extract_choices_labels","text":"(character) vector labels","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/filter_spec.html","id":null,"dir":"Reference","previous_headings":"","what":"Data extract filter specification — filter_spec","title":"Data extract filter specification — filter_spec","text":"consists choices additionally variable names choices","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/filter_spec.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data extract filter specification — filter_spec","text":"","code":"filter_spec(   vars,   choices = NULL,   selected = if (inherits(choices, \"delayed_data\")) NULL else choices[1],   multiple = length(selected) > 1 || inherits(selected, \"all_choices\"),   label = \"Filter by\",   sep = attr(choices, \"sep\"),   drop_keys = FALSE )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/filter_spec.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data extract filter specification — filter_spec","text":"vars (character) (delayed_data) object. Character vector giving columns filtered. key variables data set filtered. delayed_data objects can created via variable_choices(), value_choices(), choices_selected. choices (character numeric logical (delayed_data) object. Named character vector define choices shiny selectInput. choices used filter dataset. shall filter values vars input separated separator(sep). Please watch filter values follow order vars input. following example show filter two columns: vars = c(\"PARAMCD\",\"AVISIT\") choices = c(\"CRP - BASELINE\", \"ALT - BASELINE\") lead filtering (PARAMCD == \"CRP\" & AVISIT == \"BASELINE\") | (PARAMCD == \"ALT\" & AVISIT == \"BASELINE\"). sep input \" - \" case. delayed_data objects can created via variable_choices value_choices. selected (character numeric logical (delayed_data (all_choices)) object. Named character vector define selected values shiny selectInput (default values). value displayed inside shiny app upon start. all_choices object indicates selecting possible choices. multiple (logical) Whether multiple values shall allowed shiny selectInput. label optional (character). Define label top specific shiny selectInput. default value \"Filter \". sep (character) separator string split choices selected inputs values different columns drop_keys optional, (logical) whether drop filter column dataset keys, TRUE default.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/filter_spec.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data extract filter specification — filter_spec","text":"filter_spec-S3-class object delayed_filter_spec-S3-class object.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/filter_spec.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Data extract filter specification — filter_spec","text":"filter_spec used inside teal apps allow filtering datasets key variables. Imagine adverse events table. columns PARAMCD CNSR. PARAMCD contains levels \"OS\", \"PFS\", \"EFS\". CNSR contains levels \"0\" \"1\". first example show filter_spec setup influence drop-menu app user see.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/filter_spec.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Data extract filter specification — filter_spec","text":"","code":"# for Adverse Events table filter_spec(   vars = c(\"PARAMCD\", \"CNSR\"),   sep = \"-\",   choices = c(\"OS-1\" = \"OS-1\", \"OS-0\" = \"OS-0\", \"PFS-1\" = \"PFS-1\"),   selected = \"OS-1\",   multiple = FALSE,   label = \"Choose endpoint and Censor\" ) #> filter_spec with delayed data: #> $ vars_choices #> [1] \"PARAMCD\" \"CNSR\"    #> $ vars_selected #> [1] \"PARAMCD\" \"CNSR\"    #> $ vars_label #> NULL #> $ vars_fixed #> [1] TRUE #> $ vars_multiple #> [1] TRUE #> $ choices #>    OS-1    OS-0   PFS-1  #>  \"OS-1\"  \"OS-0\" \"PFS-1\"  #> $ selected #> [1] \"OS-1\" #> $ label #> [1] \"Choose endpoint and Censor\" #> $ multiple #> [1] FALSE #> $ fixed #> [1] FALSE #> $ sep #> [1] \"-\" #> $ drop_keys #> [1] FALSE #> $ dataname #> NULL #> $ initialized #> [1] FALSE  # filtering a single variable filter_spec(   vars = c(\"PARAMCD\"),   sep = \"-\",   choices = c(\"OS\", \"PFS\", \"EFS\"),   selected = \"OS\",   multiple = FALSE,   label = \"Choose endpoint\" ) #> filter_spec with delayed data: #> $ vars_choices #> [1] \"PARAMCD\" #> $ vars_selected #> [1] \"PARAMCD\" #> $ vars_label #> NULL #> $ vars_fixed #> [1] TRUE #> $ vars_multiple #> [1] TRUE #> $ choices #> [1] \"OS\"  \"PFS\" \"EFS\" #> $ selected #> [1] \"OS\" #> $ label #> [1] \"Choose endpoint\" #> $ multiple #> [1] FALSE #> $ fixed #> [1] FALSE #> $ sep #> [1] \"-\" #> $ drop_keys #> [1] FALSE #> $ dataname #> NULL #> $ initialized #> [1] FALSE  # filtering a single variable by multiple levels of the variable filter_spec(   vars = c(\"PARAMCD\"),   sep = \"-\",   choices = c(\"OS\", \"PFS\", \"EFS\"),   selected = c(\"OS\", \"PFS\"),   multiple = TRUE,   label = \"Choose endpoint\" ) #> filter_spec with delayed data: #> $ vars_choices #> [1] \"PARAMCD\" #> $ vars_selected #> [1] \"PARAMCD\" #> $ vars_label #> NULL #> $ vars_fixed #> [1] TRUE #> $ vars_multiple #> [1] TRUE #> $ choices #> [1] \"OS\"  \"PFS\" \"EFS\" #> $ selected #> [1] \"OS\"  \"PFS\" #> $ label #> [1] \"Choose endpoint\" #> $ multiple #> [1] TRUE #> $ fixed #> [1] FALSE #> $ sep #> [1] \"-\" #> $ drop_keys #> [1] FALSE #> $ dataname #> NULL #> $ initialized #> [1] FALSE  # delayed version filter_spec(   vars = variable_choices(\"ADSL\", \"SEX\"),   sep = \"-\",   choices = value_choices(\"ADSL\", \"SEX\", \"SEX\"),   selected = \"F\",   multiple = FALSE,   label = \"Choose endpoint and Censor\" ) #> filter_spec with delayed data: #> $ vars_choices #>   variable_choices with delayed data: ADSL #>   $ data #>   [1] \"ADSL\" #>   $ subset #>   [1] \"SEX\" #>   $ key #>   NULL #> $ vars_selected #>   variable_choices with delayed data: ADSL #>   $ data #>   [1] \"ADSL\" #>   $ subset #>   [1] \"SEX\" #>   $ key #>   NULL #> $ vars_label #> NULL #> $ vars_fixed #> [1] TRUE #> $ vars_multiple #> [1] TRUE #> $ choices #>   value_choices with delayed data:  ADSL #>   $ data #>   [1] \"ADSL\" #>   $ var_choices #>   [1] \"SEX\" #>   $ var_label #>   [1] \"SEX\" #>   $ subset #>   NULL #>   $ sep #>   [1] \" - \" #> $ selected #> [1] \"F\" #> $ label #> [1] \"Choose endpoint and Censor\" #> $ multiple #> [1] FALSE #> $ fixed #> [1] FALSE #> $ sep #> [1] \"-\" #> $ drop_keys #> [1] FALSE #> $ dataname #> NULL #> $ initialized #> [1] FALSE # using `choices_selected()` filter_spec(   vars = choices_selected(variable_choices(\"ADSL\", subset = c(\"SEX\", \"AGE\")), \"SEX\", fixed = FALSE),   multiple = TRUE ) #> filter_spec with delayed data: #> $ vars_choices #>   variable_choices with delayed data: ADSL #>   $ data #>   [1] \"ADSL\" #>   $ subset #>   [1] \"SEX\" \"AGE\" #>   $ key #>   NULL #> $ vars_selected #> [1] \"SEX\" #> $ vars_label #> [1] \"Filter by\" #> $ vars_fixed #> [1] FALSE #> $ vars_multiple #> [1] FALSE #> $ choices #> NULL #> $ selected #> NULL #> $ label #> NULL #> $ multiple #> [1] TRUE #> $ fixed #> [1] FALSE #> $ sep #> [1] \" - \" #> $ drop_keys #> [1] FALSE #> $ dataname #> NULL #> $ initialized #> [1] FALSE  filter_spec(   vars = choices_selected(variable_choices(\"ADSL\"), \"SEX\", fixed = TRUE),   multiple = TRUE ) #> filter_spec with delayed data: #> $ vars_choices #>   variable_choices with delayed data: ADSL #>   $ data #>   [1] \"ADSL\" #>   $ subset #>   NULL #>   $ key #>   NULL #> $ vars_selected #> [1] \"SEX\" #> $ vars_label #> NULL #> $ vars_fixed #> [1] TRUE #> $ vars_multiple #> [1] FALSE #> $ choices #> NULL #> $ selected #> NULL #> $ label #> [1] \"Filter by\" #> $ multiple #> [1] TRUE #> $ fixed #> [1] FALSE #> $ sep #> [1] \" - \" #> $ drop_keys #> [1] FALSE #> $ dataname #> NULL #> $ initialized #> [1] FALSE  # choose all choices adsl_filter <- filter_spec(   vars = choices_selected(variable_choices(\"ADSL\"), \"SEX\", fixed = FALSE),   choices = value_choices(\"ADSL\", \"SEX\"),   selected = all_choices() )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/filter_spec_internal.html","id":null,"dir":"Reference","previous_headings":"","what":"Data extract dynamic filter specification — filter_spec_internal","title":"Data extract dynamic filter specification — filter_spec_internal","text":"function returns configuration data_extract_ui module. function covers configuration filtering datasets (called filter_spec), used build UI element teal app.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/filter_spec_internal.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data extract dynamic filter specification — filter_spec_internal","text":"","code":"filter_spec_internal(   vars_choices,   vars_selected = NULL,   vars_label = NULL,   vars_fixed = FALSE,   vars_multiple = TRUE,   choices = NULL,   selected = NULL,   label = NULL,   fixed = FALSE,   multiple = TRUE,   sep = attr(vars_choices, \"sep\"),   drop_keys = FALSE,   dataname = NULL,   initialized = FALSE )  # S3 method for delayed_data filter_spec_internal(   vars_choices,   vars_selected = NULL,   vars_label = NULL,   vars_fixed = FALSE,   vars_multiple = TRUE,   choices = NULL,   selected = NULL,   label = NULL,   fixed = FALSE,   multiple = TRUE,   sep = attr(vars_choices, \"sep\"),   drop_keys = FALSE,   dataname = NULL,   initialized = FALSE )  # S3 method for default filter_spec_internal(   vars_choices,   vars_selected = NULL,   vars_label = NULL,   vars_fixed = FALSE,   vars_multiple = TRUE,   choices = NULL,   selected = NULL,   label = NULL,   fixed = FALSE,   multiple = TRUE,   sep = attr(vars_choices, \"sep\"),   drop_keys = FALSE,   dataname = NULL,   initialized = FALSE )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/filter_spec_internal.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data extract dynamic filter specification — filter_spec_internal","text":"vars_choices (character delayed_data)  vector dataset column names available build dynamic filter delayed_data objects can created via variable_choices. vars_selected (NULL named character)  selected column name choices. vars_label (character) title printed UI element generated basis filter_spec. vars_fixed (logical) true allow change selected variables UI element; otherwise, allow. vars_multiple (logical) true allow select multiple variables UI elements; otherwise, allow. choices (character numeric logical (delayed_data) object. Named character vector define choices shiny selectInput. choices used filter dataset. shall filter values vars input separated separator(sep). Please watch filter values follow order vars input. following example show filter two columns: vars = c(\"PARAMCD\",\"AVISIT\") choices = c(\"CRP - BASELINE\", \"ALT - BASELINE\") lead filtering (PARAMCD == \"CRP\" & AVISIT == \"BASELINE\") | (PARAMCD == \"ALT\" & AVISIT == \"BASELINE\"). sep input \" - \" case. delayed_data objects can created via variable_choices value_choices. selected (character numeric logical (delayed_data (all_choices)) object. Named character vector define selected values shiny selectInput (default values). value displayed inside shiny app upon start. all_choices object indicates selecting possible choices. label optional (character). Define label top specific shiny selectInput. default value \"Filter \". fixed (logical) true allow change initially selected values variables; otherwise, allow. multiple (logical) Whether multiple values shall allowed shiny selectInput. sep (character) separator string split choices selected inputs values different columns drop_keys optional, (logical) whether drop filter column dataset keys, TRUE default. dataname (character) name dataset filter covers. Set initialization teal application. initialized (logical) indicates whether filter already initialized application. TRUE filter already consumed server function; FALSE otherwise.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/filter_spec_internal.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data extract dynamic filter specification — filter_spec_internal","text":"filter_spec delayed_filter_spec S3-class object.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/filter_spec_internal.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Data extract dynamic filter specification — filter_spec_internal","text":"","code":"teal.transform:::filter_spec_internal(   vars_choices = c(\"PARAMCD\", \"AVISIT\"),   vars_selected = \"PARAMCD\",   vars_multiple = TRUE ) #> filter_spec with delayed data: #> $ vars_choices #> [1] \"PARAMCD\" \"AVISIT\"  #> $ vars_selected #> [1] \"PARAMCD\" #> $ vars_label #> NULL #> $ vars_fixed #> [1] FALSE #> $ vars_multiple #> [1] TRUE #> $ choices #> NULL #> $ selected #> NULL #> $ label #> NULL #> $ multiple #> [1] TRUE #> $ fixed #> [1] FALSE #> $ sep #> [1] \" - \" #> $ drop_keys #> [1] FALSE #> $ dataname #> NULL #> $ initialized #> [1] FALSE  ADRS <- teal.transform::rADRS teal.transform:::filter_spec_internal(   vars_choices = variable_choices(ADRS),   vars_selected = \"PARAMCD\",   vars_multiple = TRUE ) #> filter_spec with delayed data: #> $ vars_choices #> number of choices: 65  #>  #> STUDYID: Study Identifier #> USUBJID: Unique Subject Identifier #> SUBJID: Subject Identifier for the Study #> SITEID: Study Site Identifier #> AGE: Age #> AGEU: Age Units #> SEX: Sex #> RACE: Race #> ETHNIC: Ethnicity #> COUNTRY: Country #> DTHFL: Subject Death Flag #> INVID: Investigator Identifier #> INVNAM: Investigator Name #> ARM: Description of Planned Arm #> ARMCD: Planned Arm Code #> ACTARM: Description of Actual Arm #> ACTARMCD: Actual Arm Code #> TRT01P: Planned Treatment for Period 01 #> TRT01A: Actual Treatment for Period 01 #> TRT02P: Planned Treatment for Period 02 #> TRT02A: Actual Treatment for Period 02 #> REGION1: Geographic Region 1 #> STRATA1: Stratification Factor 1 #> STRATA2: Stratification Factor 2 #> BMRKR1: Continuous Level Biomarker 1 #> BMRKR2: Categorical Level Biomarker 2 #> ITTFL: Intent-To-Treat Population Flag #> SAFFL: Safety Population Flag #> BMEASIFL: Response Evaluable Population Flag #> BEP01FL: Biomarker Evaluable Population Flag #> AEWITHFL: AE Leading to Drug Withdrawal Flag #> RANDDT: Date of Randomization #> TRTSDTM: Datetime of First Exposure to Treatment #> TRTEDTM: Datetime of Last Exposure to Treatment #> TRT01SDTM: Datetime of First Exposure to Treatment in Period 01 #> TRT01EDTM: Datetime of Last Exposure in Period 01 #> TRT02SDTM: Datetime of First Exposure to Treatment in Period 02 #> TRT02EDTM: Datetime of Last Exposure to Treatment in Period 02 #> AP01SDTM: Period 01 Start Datetime #> AP01EDTM: Period 01 End Datetime #> AP02SDTM: Period 02 Start Datetime #> AP02EDTM: Period 02 End Datetime #> EOSSTT: End of Study Status #> EOTSTT: End of Treatment Status #> EOSDT: End of Study Date #> EOSDY: End of Study Relative Day #> DCSREAS: Reason for Discontinuation from Study #> DTHDT: Date of Death #> DTHCAUS: Cause of Death #> DTHCAT: Cause of Death Category #> LDDTHELD: Elapsed Days from Last Dose to Death #> LDDTHGR1: Last Dose to Death - Days Elapsed Grp 1 #> LSTALVDT: Date Last Known Alive #> DTHADY: Relative Day of Death #> ADTHAUT: Autopsy Performed #> ASEQ: Analysis Sequence Number #> RSSEQ: Sequence Number #> PARAM: Parameter #> PARAMCD: Parameter Code #> AVAL: Analysis Value #> AVALC: Analysis Value (C) #> ADTM: Analysis Datetime #> ADY: Analysis Relative Day #> AVISIT: Analysis Visit #> AVISITN: Analysis Visit (N) #>  #> $ vars_selected #> [1] \"PARAMCD\" #> $ vars_label #> NULL #> $ vars_fixed #> [1] FALSE #> $ vars_multiple #> [1] TRUE #> $ choices #> NULL #> $ selected #> NULL #> $ label #> NULL #> $ multiple #> [1] TRUE #> $ fixed #> [1] FALSE #> $ sep #> [1] \" - \" #> $ drop_keys #> [1] FALSE #> $ dataname #> NULL #> $ initialized #> [1] FALSE  teal.transform:::filter_spec_internal(   vars_choices = variable_choices(\"ADRS\"),   vars_selected = \"PARAMCD\",   vars_multiple = TRUE ) #> filter_spec with delayed data: #> $ vars_choices #>   variable_choices with delayed data: ADRS #>   $ data #>   [1] \"ADRS\" #>   $ subset #>   NULL #>   $ key #>   NULL #> $ vars_selected #> [1] \"PARAMCD\" #> $ vars_label #> NULL #> $ vars_fixed #> [1] FALSE #> $ vars_multiple #> [1] TRUE #> $ choices #> NULL #> $ selected #> NULL #> $ label #> NULL #> $ multiple #> [1] TRUE #> $ fixed #> [1] FALSE #> $ sep #> [1] \" - \" #> $ drop_keys #> [1] FALSE #> $ dataname #> NULL #> $ initialized #> [1] FALSE"},{"path":"https://insightsengineering.github.io/teal.transform/reference/format_data_extract.html","id":null,"dir":"Reference","previous_headings":"","what":"Formatting data extracts — format_data_extract","title":"Formatting data extracts — format_data_extract","text":"Returns human-readable string representation extracted data_extract_spec object.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/format_data_extract.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Formatting data extracts — format_data_extract","text":"","code":"format_data_extract(data_extract)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/format_data_extract.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Formatting data extracts — format_data_extract","text":"data_extract list list output data_extract_srv","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/format_data_extract.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Formatting data extracts — format_data_extract","text":"character(1) string representation","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/format_data_extract.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Formatting data extracts — format_data_extract","text":"function formats output data_extract_srv. See example information.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/format_data_extract.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Formatting data extracts — format_data_extract","text":"","code":"simple_des <- data_extract_spec(   dataname = \"iris\",   filter = filter_spec(vars = \"Petal.Length\", choices = c(\"1.4\", \"1.5\")),   select = select_spec(choices = c(\"Petal.Length\", \"Species\")) )  sample_filtered_data <- {   teal.slice::init_filtered_data(     list(iris = list(dataset = iris))   ) }  if (interactive()) {   shiny::shinyApp(     ui = shiny::fluidPage(       data_extract_ui(         id = \"extract\",         label = \"data extract ui\",         data_extract_spec = simple_des,         is_single_dataset = TRUE       ),       shiny::verbatimTextOutput(\"formatted_extract\")     ),     server = function(input, output, session) {       extracted_input <- data_extract_srv(         id = \"extract\",         datasets = sample_filtered_data,         data_extract_spec = simple_des       )       output$formatted_extract <- shiny::renderPrint({         cat(format_data_extract(extracted_input()))       })     }   ) }"},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_anl_relabel_call.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Gets the relabel call — get_anl_relabel_call","text":"","code":"get_anl_relabel_call(columns_source, datasets, anl_name = \"ANL\")"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_anl_relabel_call.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Gets the relabel call — get_anl_relabel_call","text":"columns_source named list names column names, values labels + additional attribute dataname datasets (named list reactive non-reactive data.frame) object containing data list data.frame. passing list non-reactive data.frame objects, converted reactive data.frame objects internally. anl_name (character(1)) Name analysis dataset.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_anl_relabel_call.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Gets the relabel call — get_anl_relabel_call","text":"(call) relabel dataset assign anl_name.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dataset_prefixed_col_names.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Returns non-key column names from data — get_dataset_prefixed_col_names","text":"","code":"get_dataset_prefixed_col_names(data)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dataset_prefixed_col_names.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Returns non-key column names from data — get_dataset_prefixed_col_names","text":"data (data.frame) Data attribute filter_and_columns. can created data_extract_srv. returns shiny reactive.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dataset_prefixed_col_names.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Returns non-key column names from data — get_dataset_prefixed_col_names","text":"named character vector non-key columns data..","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dataset_prefixed_col_names.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Returns non-key column names from data — get_dataset_prefixed_col_names","text":"data_extract_srv","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dplyr_call.html","id":null,"dir":"Reference","previous_headings":"","what":"Parses filter, select, rename and reshape call — get_dplyr_call","title":"Parses filter, select, rename and reshape call — get_dplyr_call","text":"Parse filter, select, rename reshape call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dplyr_call.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Parses filter, select, rename and reshape call — get_dplyr_call","text":"","code":"get_dplyr_call(   selector_list,   idx = 1L,   join_keys = teal.data::join_keys(),   dplyr_call_data = get_dplyr_call_data(selector_list, join_keys = join_keys),   datasets = NULL )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dplyr_call.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Parses filter, select, rename and reshape call — get_dplyr_call","text":"selector_list (reactive) output data_extract_multiple_srv() reactive named list outputs data_extract_srv(). using reactive named list, names must identical shiny ids respective data_extract_ui(). idx optional (integer) current selector index selectors list join_keys (JoinKeys) nested list keys used joining dplyr_call_data (list) simplified selectors aggregated set filters, selections, reshapes etc. necessary data merging data (NULL named list).","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dplyr_call.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Parses filter, select, rename and reshape call — get_dplyr_call","text":"(call) filter, select, rename reshape call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dplyr_call.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Parses filter, select, rename and reshape call — get_dplyr_call","text":"","code":"# one dataset teal.transform:::get_dplyr_call(   list(list(     dataname = \"ADSL\",     filters = NULL,     select = character(0),     keys = teal.data::get_cdisc_keys(\"ADSL\"),     reshape = FALSE,     internal_id = \"test1\"   )) ) #> ADSL teal.transform:::get_dplyr_call(   list(list(     dataname = \"ADSL\",     filters = list(list(columns = \"SEX\", selected = list(\"F\", \"M\"))),     select = character(0),     keys = teal.data::get_cdisc_keys(\"ADSL\"),     reshape = FALSE,     internal_id = \"test1\"   )) ) #> ADSL %>% dplyr::filter(SEX %in% c(\"F\", \"M\")) teal.transform:::get_dplyr_call(   list(list(     dataname = \"ADSL\",     filters = list(list(columns = \"SEX\", selected = list(\"F\", \"M\"))),     select = c(\"AVAL\"),     keys = teal.data::get_cdisc_keys(\"ADSL\"),     reshape = FALSE,     internal_id = \"test1\"   )) ) #> ADSL %>% dplyr::filter(SEX %in% c(\"F\", \"M\")) %>% dplyr::select(AVAL)  # two datasets with rename part teal.transform:::get_dplyr_call(   list(     list(       dataname = \"ADSL\",       filters = NULL,       select = c(\"COL_1\", \"COL_2\"),       keys = teal.data::get_cdisc_keys(\"ADSL\"),       reshape = FALSE,       internal_id = \"test1\"     ),     list(       dataname = \"ADSL\",       filters = NULL,       select = c(\"COL_2\", \"COL_3\"),       keys = teal.data::get_cdisc_keys(\"ADSL\"),       reshape = FALSE,       internal_id = \"test2\"     )   ),   idx = 1L ) #> ADSL %>% dplyr::select(COL_1, COL_2) %>% dplyr::rename(test1.COL_2 = COL_2)  # long dataset with reshape part teal.transform:::get_dplyr_call(   list(list(     dataname = \"ADLB\",     filters = list(list(       columns = c(\"PARAMCD\", \"AVISIT\"),       selected = list(c(\"ALBCV\", \"SCREENING\"), c(\"ALBCV\", \"BASELINE\"))     )),     select = c(\"AVAL\"),     keys = teal.data::get_cdisc_keys(\"ADLB\"),     reshape = TRUE,     internal_id = \"test1\"   )) ) #> ADLB %>% dplyr::filter((PARAMCD == \"ALBCV\" & AVISIT == \"SCREENING\") |  #>     (PARAMCD == \"ALBCV\" & AVISIT == \"BASELINE\")) %>% dplyr::select(PARAMCD,  #>     AVISIT, AVAL) %>% tidyr::pivot_longer(cols = \"AVAL\", names_to = \"MEASURE\",  #>     values_to = \"VALUE\") %>% tidyr::unite(KEY, MEASURE, PARAMCD,  #>     AVISIT) %>% tidyr::pivot_wider(names_from = \"KEY\", values_from = \"VALUE\")"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dplyr_call_data.html","id":null,"dir":"Reference","previous_headings":"","what":"Aggregates data extract selectors — get_dplyr_call_data","title":"Aggregates data extract selectors — get_dplyr_call_data","text":"Simplifies selector_list aggregated list one element per selector - dataset, filter configuration reshape status","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dplyr_call_data.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Aggregates data extract selectors — get_dplyr_call_data","text":"","code":"get_dplyr_call_data(selector_list, join_keys = teal.data::join_keys())"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dplyr_call_data.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Aggregates data extract selectors — get_dplyr_call_data","text":"selector_list (reactive) output data_extract_multiple_srv() reactive named list outputs data_extract_srv(). using reactive named list, names must identical shiny ids respective data_extract_ui(). join_keys (JoinKeys) nested list keys used joining","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dplyr_call_data.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Aggregates data extract selectors — get_dplyr_call_data","text":"(list) simplified selectors aggregated set filters, selections, reshapes etc. necessary data merging","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dropped_filters.html","id":null,"dir":"Reference","previous_headings":"","what":"Names of filtered-out filters dropped from selection — get_dropped_filters","title":"Names of filtered-out filters dropped from selection — get_dropped_filters","text":"Names filtered-filters dropped selection","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dropped_filters.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Names of filtered-out filters dropped from selection — get_dropped_filters","text":"","code":"get_dropped_filters(selector)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dropped_filters.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Names of filtered-out filters dropped from selection — get_dropped_filters","text":"selector one element selector_list obtained get_dplyr_call_data.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dropped_filters.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Names of filtered-out filters dropped from selection — get_dropped_filters","text":"names character filters dropped select call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dropped_filters.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Names of filtered-out filters dropped from selection — get_dropped_filters","text":"Names filtered-filters dropped automatic selection (key vars automatically included select). Dropped filter filter became unique observations. means variable filtered just one level, key anymore. variables used filter also dropped automatic selection, unless selected.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_extract_datanames.html","id":null,"dir":"Reference","previous_headings":"","what":"Gets names of the datasets from a list of data_extract_spec objects — get_extract_datanames","title":"Gets names of the datasets from a list of data_extract_spec objects — get_extract_datanames","text":"Fetches dataname slot per data_extract_spec list data_extract_spec returns unique dataname set.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_extract_datanames.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Gets names of the datasets from a list of data_extract_spec objects — get_extract_datanames","text":"","code":"get_extract_datanames(data_extracts)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_extract_datanames.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Gets names of the datasets from a list of data_extract_spec objects — get_extract_datanames","text":"data_extracts single data_extract_spec object list (lists) data_extract_spec","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_filter_call.html","id":null,"dir":"Reference","previous_headings":"","what":"Returns dplyr filter call — get_filter_call","title":"Returns dplyr filter call — get_filter_call","text":"Returns dplyr filter call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_filter_call.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Returns dplyr filter call — get_filter_call","text":"","code":"get_filter_call(filter, dataname = NULL, datasets = NULL)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_filter_call.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Returns dplyr filter call — get_filter_call","text":"filter (list) Either list lists list select selected items. dataname (NULL character) name dataset. datasets (NULL named `list`).","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_filter_call.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Returns dplyr filter call — get_filter_call","text":"(call) dplyr filter call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_filter_call.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Returns dplyr filter call — get_filter_call","text":"","code":"teal.transform:::get_filter_call(   filter = list(list(columns = \"SEX\", selected = list(NA, \"F\", \"M\"))) ) #> dplyr::filter(SEX %in% c(NA_character_, \"F\", \"M\")) teal.transform:::get_filter_call(filter = list(   list(columns = \"SEX\", selected = list(NA, \"F\", \"M\")),   list(columns = \"VAR\", selected = list(\"LEVEL1\", \"LEVEL2\")) )) #> dplyr::filter(SEX %in% c(NA_character_, \"F\", \"M\") & VAR %in%  #>     c(\"LEVEL1\", \"LEVEL2\"))"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_initial_filter_values.html","id":null,"dir":"Reference","previous_headings":"","what":"Returns the initial values for the vals widget\nof a filter_spec object. — get_initial_filter_values","title":"Returns the initial values for the vals widget\nof a filter_spec object. — get_initial_filter_values","text":"Returns initial values vals widget filter_spec object.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_initial_filter_values.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Returns the initial values for the vals widget\nof a filter_spec object. — get_initial_filter_values","text":"","code":"get_initial_filter_values(filter, datasets)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_initial_filter_values.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Returns the initial values for the vals widget\nof a filter_spec object. — get_initial_filter_values","text":"filter (filter_spec) filter generated call filter_spec() datasets (named list) list reactive data.frame type objects.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_initial_filter_values.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Returns the initial values for the vals widget\nof a filter_spec object. — get_initial_filter_values","text":"named list two slots choices selected","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_initial_filter_values.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Returns the initial values for the vals widget\nof a filter_spec object. — get_initial_filter_values","text":"","code":"filtered_data_list <- list(iris = shiny::reactive(utils::head(iris))) filter <- filter_spec(vars = colnames(iris)[1]) filter$dataname <- \"iris\" shiny::isolate(   teal.transform:::get_initial_filter_values(filter = filter, datasets = filtered_data_list) ) #> $choices #> number of choices: 6  #>  #> 5.1:  #> 4.9:  #> 4.7:  #> 4.6:  #> 5:  #> 5.4:  #>  #>"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_call.html","id":null,"dir":"Reference","previous_headings":"","what":"Get merge call from a list of selectors — get_merge_call","title":"Get merge call from a list of selectors — get_merge_call","text":"Returns list calls depending selector(s) type merge Order merge selectors passed function.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_call.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get merge call from a list of selectors — get_merge_call","text":"","code":"get_merge_call(   selector_list,   join_keys = teal.data::join_keys(),   dplyr_call_data = get_dplyr_call_data(selector_list, join_keys = join_keys),   merge_function = \"dplyr::full_join\",   anl_name = \"ANL\" )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_call.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get merge call from a list of selectors — get_merge_call","text":"selector_list (reactive) output data_extract_multiple_srv() reactive named list outputs data_extract_srv(). using reactive named list, names must identical shiny ids respective data_extract_ui(). join_keys (JoinKeys) nested list keys used joining dplyr_call_data (list) simplified selectors aggregated set filters, merge_function (character(1) reactive) character string function accepts arguments x, y perform merging datasets. anl_name (character(1)) Name analysis dataset.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_call.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get merge call from a list of selectors — get_merge_call","text":"(list call elements)","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_key_grid.html","id":null,"dir":"Reference","previous_headings":"","what":"Gets keys list from keys list — get_merge_key_grid","title":"Gets keys list from keys list — get_merge_key_grid","text":"Gets keys list keys list","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_key_grid.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Gets keys list from keys list — get_merge_key_grid","text":"","code":"get_merge_key_grid(selector_list, join_keys = teal.data::join_keys())"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_key_grid.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Gets keys list from keys list — get_merge_key_grid","text":"selector_list (reactive) output data_extract_multiple_srv() reactive named list outputs data_extract_srv(). using reactive named list, names must identical shiny ids respective data_extract_ui(). join_keys (JoinKeys) nested list keys used joining","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_key_grid.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Gets keys list from keys list — get_merge_key_grid","text":"list key pairs datasets","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_key_i.html","id":null,"dir":"Reference","previous_headings":"","what":"Gets keys needed for join call of two selectors — get_merge_key_i","title":"Gets keys needed for join call of two selectors — get_merge_key_i","text":"Gets keys needed join call two selectors","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_key_i.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Gets keys needed for join call of two selectors — get_merge_key_i","text":"","code":"get_merge_key_i(   selector_list,   idx,   dplyr_call_data = get_dplyr_call_data(selector_list) )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_key_i.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Gets keys needed for join call of two selectors — get_merge_key_i","text":"selector_list (reactive) output data_extract_multiple_srv() reactive named list outputs data_extract_srv(). using reactive named list, names must identical shiny ids respective data_extract_ui(). idx optional (integer) current selector index selectors list dplyr_call_data (list) simplified selectors aggregated set filters,","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_key_i.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Gets keys needed for join call of two selectors — get_merge_key_i","text":"(call)","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_key_pair.html","id":null,"dir":"Reference","previous_headings":"","what":"Gets keys vector from keys list — get_merge_key_pair","title":"Gets keys vector from keys list — get_merge_key_pair","text":"Gets keys vector keys list","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_key_pair.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Gets keys vector from keys list — get_merge_key_pair","text":"","code":"get_merge_key_pair(selector_from, selector_to, key_from)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_key_pair.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Gets keys vector from keys list — get_merge_key_pair","text":"selector_from (list) data_extract_srv selector_to (list) data_extract_srv key_from (character) keys used first selector joining","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_key_pair.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Gets keys vector from keys list — get_merge_key_pair","text":"(character)","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_key_pair.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Gets keys vector from keys list — get_merge_key_pair","text":"function covers now 4 cases dataset without parent  Primary keys returned dataset source = dataset target primary keys subtracted key columns get purely filtered. means just one value left filtering inside column. can taken . target dataname parent  foreign keys case foreign keys","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_pivot_longer_col.html","id":null,"dir":"Reference","previous_headings":"","what":"Get pivot longer  columns — get_pivot_longer_col","title":"Get pivot longer  columns — get_pivot_longer_col","text":"Get values names spread columns.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_pivot_longer_col.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get pivot longer  columns — get_pivot_longer_col","text":"","code":"get_pivot_longer_col(selector)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_pivot_longer_col.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get pivot longer  columns — get_pivot_longer_col","text":"selector one element selector_list obtained get_dplyr_call_data.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_relabel_call.html","id":null,"dir":"Reference","previous_headings":"","what":"Create relabel call from named character — get_relabel_call","title":"Create relabel call from named character — get_relabel_call","text":"Function creates relabel call named character.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_relabel_call.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create relabel call from named character — get_relabel_call","text":"","code":"get_relabel_call(labels)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_relabel_call.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create relabel call from named character — get_relabel_call","text":"labels (named character) name name function argument name value function argument value.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_relabel_call.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create relabel call from named character — get_relabel_call","text":"(call) object relabel step","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_relabel_call.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create relabel call from named character — get_relabel_call","text":"","code":"get_relabel_call(   labels = c(     x = as.name(\"ANL\"),     AGE = \"Age\",     AVAL = \"Continuous variable\"   ) ) #> teal.data::col_relabel(x = ANL, AGE = \"Age\", AVAL = \"Continuous variable\")  get_relabel_call(   labels = c(     AGE = \"Age\",     AVAL = \"Continuous variable\"   ) ) #> teal.data::col_relabel(AGE = \"Age\", AVAL = \"Continuous variable\")"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_relabel_cols.html","id":null,"dir":"Reference","previous_headings":"","what":"Get columns to relabel — get_relabel_cols","title":"Get columns to relabel — get_relabel_cols","text":"Get columns relabel excluding reshaped (pivot_wider)","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_relabel_cols.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get columns to relabel — get_relabel_cols","text":"","code":"get_relabel_cols(columns_source, dplyr_call_data)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_relabel_cols.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get columns to relabel — get_relabel_cols","text":"columns_source list dplyr_call_data list","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_relabel_cols.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get columns to relabel — get_relabel_cols","text":"columns_source list without columns reshaped","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_rename_call.html","id":null,"dir":"Reference","previous_headings":"","what":"Returns dplyr rename call — get_rename_call","title":"Returns dplyr rename call — get_rename_call","text":"Rename used duplicated columns","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_rename_call.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Returns dplyr rename call — get_rename_call","text":"","code":"get_rename_call(   selector_list = list(),   idx = 1L,   join_keys = teal.data::join_keys(),   dplyr_call_data = get_dplyr_call_data(selector_list, join_keys = join_keys) )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_rename_call.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Returns dplyr rename call — get_rename_call","text":"selector_list (reactive) output data_extract_multiple_srv() reactive named list outputs data_extract_srv(). using reactive named list, names must identical shiny ids respective data_extract_ui(). idx optional (integer) current selector index selectors list join_keys (JoinKeys) nested list keys used joining dplyr_call_data (list) simplified selectors aggregated set filters, selections, reshapes etc. necessary data merging","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_rename_call.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Returns dplyr rename call — get_rename_call","text":"(call) dplyr rename call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_rename_call.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Returns dplyr rename call — get_rename_call","text":"get_rename_dict","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_rename_call.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Returns dplyr rename call — get_rename_call","text":"","code":"x <- list(   list(     dataname = \"ADSL\",     filters = NULL,     select = utils::head(letters, 3),     keys = teal.data::get_cdisc_keys(\"ADSL\"),     reshape = FALSE,     internal_id = \"test1\"   ),   list(     dataname = \"ADSL\",     filters = NULL,     select = letters,     keys = teal.data::get_cdisc_keys(\"ADSL\"),     reshape = FALSE,     internal_id = \"test2\"   ),   list(     dataname = \"ADSL\",     filters = NULL,     select = utils::tail(letters, 3),     keys = teal.data::get_cdisc_keys(\"ADSL\"),     reshape = FALSE,     internal_id = \"test3\"   ),   list(     dataname = \"ADSL\",     filters = NULL,     select = c(\"aa\", \"bb\"),     keys = teal.data::get_cdisc_keys(\"ADSL\"),     reshape = FALSE,     internal_id = \"test4\"   ) ) teal.transform:::get_rename_call(x, 1L) #> dplyr::rename(test1.a = a, test1.b = b, test1.c = c) teal.transform:::get_rename_call(x, 2L) #> dplyr::rename(test2.a = a, test2.b = b, test2.c = c, test2.x = x,  #>     test2.y = y, test2.z = z) teal.transform:::get_rename_call(x, 3L) #> dplyr::rename(test3.x = x, test3.y = y, test3.z = z) teal.transform:::get_rename_call(x, 4L) #> NULL"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_reshape_call.html","id":null,"dir":"Reference","previous_headings":"","what":"Returns dplyr reshape call — get_reshape_call","title":"Returns dplyr reshape call — get_reshape_call","text":"Returns dplyr reshape call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_reshape_call.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Returns dplyr reshape call — get_reshape_call","text":"","code":"get_reshape_call(   selector_list = list(),   idx = 1L,   join_keys = teal.data::join_keys(),   dplyr_call_data = get_dplyr_call_data(selector_list, join_keys = join_keys) )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_reshape_call.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Returns dplyr reshape call — get_reshape_call","text":"selector_list (reactive) output data_extract_multiple_srv() reactive named list outputs data_extract_srv(). using reactive named list, names must identical shiny ids respective data_extract_ui(). idx optional (integer) current selector index selectors list join_keys (JoinKeys) nested list keys used joining dplyr_call_data (list) simplified selectors aggregated set filters, selections, reshapes etc. necessary data merging","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_reshape_call.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Returns dplyr reshape call — get_reshape_call","text":"(list) list multiple dplyr calls reshape data","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_reshape_call.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Returns dplyr reshape call — get_reshape_call","text":"","code":"filters <- list(   columns = c(\"PARAMCD\", \"AVISIT\"),   selected = list(c(\"ALT\", \"SCREENING\"), c(\"ALT\", \"BASELINE\")) ) select <- \"AVAL\" internal_id <- \"ADLB\"  x <- list(   list(     dataname = \"ADLB\",     filters = list(list(       columns = c(\"PARAMCD\", \"AVISIT\"),       selected = list(c(\"ALBCV\", \"SCREENING\"), c(\"ALBCV\", \"BASELINE\")),       multiple = FALSE     )),     select = \"AVAL\",     keys = teal.data::get_cdisc_keys(\"ADLB\"),     reshape = TRUE,     internal_id = \"test\"   ) ) teal.transform:::get_reshape_call(x, 1L) #> [[1]] #> tidyr::pivot_longer(cols = \"AVAL\", names_to = \"MEASURE\", values_to = \"VALUE\") #>  #> [[2]] #> tidyr::unite(KEY, MEASURE, PARAMCD, AVISIT) #>  #> [[3]] #> tidyr::pivot_wider(names_from = \"KEY\", values_from = \"VALUE\") #>"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_reshape_unite_col.html","id":null,"dir":"Reference","previous_headings":"","what":"Get unite columns — get_reshape_unite_col","title":"Get unite columns — get_reshape_unite_col","text":"Get key names spreads values columns. Reshape done keys filter_spec.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_reshape_unite_col.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get unite columns — get_reshape_unite_col","text":"","code":"get_reshape_unite_col(selector)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_reshape_unite_col.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get unite columns — get_reshape_unite_col","text":"selector one element selector_list obtained get_dplyr_call_data.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_reshape_unite_vals.html","id":null,"dir":"Reference","previous_headings":"","what":"Get unite columns values — get_reshape_unite_vals","title":"Get unite columns values — get_reshape_unite_vals","text":"Get key values (levels) unite columns.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_reshape_unite_vals.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get unite columns values — get_reshape_unite_vals","text":"","code":"get_reshape_unite_vals(selector)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_reshape_unite_vals.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get unite columns values — get_reshape_unite_vals","text":"selector one element selector_list obtained get_dplyr_call_data.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_select_call.html","id":null,"dir":"Reference","previous_headings":"","what":"Parse dplyr select call — get_select_call","title":"Parse dplyr select call — get_select_call","text":"Parse dplyr select call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_select_call.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Parse dplyr select call — get_select_call","text":"","code":"get_select_call(select)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_select_call.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Parse dplyr select call — get_select_call","text":"select (character) vector selected column names","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_select_call.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Parse dplyr select call — get_select_call","text":"(call) dplyr select call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_select_call.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Parse dplyr select call — get_select_call","text":"","code":"teal.transform:::get_select_call(letters) #> dplyr::select(a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p,  #>     q, r, s, t, u, v, w, x, y, z)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/include_css_files.html","id":null,"dir":"Reference","previous_headings":"","what":"Include CSS files from /inst/css/ package directory to application header — include_css_files","title":"Include CSS files from /inst/css/ package directory to application header — include_css_files","text":"system.file used access files packages, work devtools. Therefore, redefine method package needed. Thus, export method","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/include_css_files.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Include CSS files from /inst/css/ package directory to application header — include_css_files","text":"","code":"include_css_files(pattern = \"*\")"},{"path":"https://insightsengineering.github.io/teal.transform/reference/include_css_files.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Include CSS files from /inst/css/ package directory to application header — include_css_files","text":"pattern (character) pattern files included","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/include_css_files.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Include CSS files from /inst/css/ package directory to application header — include_css_files","text":"HTML code includes CSS files","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/is_single_dataset.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Checks if the input data_extract_spec objects all come from the same dataset — is_single_dataset","text":"","code":"is_single_dataset(...)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/is_single_dataset.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Checks if the input data_extract_spec objects all come from the same dataset — is_single_dataset","text":"... either data_extract_spec objects lists data_extract_spec objects contain NULL","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/is_single_dataset.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Checks if the input data_extract_spec objects all come from the same dataset — is_single_dataset","text":"logical","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/list_extract_spec.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Make sure that the extract spec has list form — list_extract_spec","text":"","code":"list_extract_spec(x, allow_null = FALSE)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/list_extract_spec.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Make sure that the extract spec has list form — list_extract_spec","text":"x data_extract_spec single data_extract_spec list allow_null logical whether x can NULL","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/list_extract_spec.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Make sure that the extract spec has list form — list_extract_spec","text":"x list already","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_datasets.html","id":null,"dir":"Reference","previous_headings":"","what":"Merge the datasets on the keys — merge_datasets","title":"Merge the datasets on the keys — merge_datasets","text":"combines/merges multiple datasets specified keys attribute.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_datasets.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Merge the datasets on the keys — merge_datasets","text":"","code":"merge_datasets(   selector_list,   datasets,   join_keys,   merge_function = \"dplyr::full_join\",   anl_name = \"ANL\" )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_datasets.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Merge the datasets on the keys — merge_datasets","text":"selector_list (reactive) output data_extract_multiple_srv() reactive named list outputs data_extract_srv(). using reactive named list, names must identical shiny ids respective data_extract_ui(). datasets (named list reactive non-reactive data.frame) object containing data list data.frame. passing list non-reactive data.frame objects, converted reactive data.frame objects internally. join_keys (JoinKeys) variables used join keys datasets datasets. used extract keys every dataset. merge_function (character(1) reactive) character string function accepts arguments x, y perform merging datasets. anl_name (character(1)) Name analysis dataset.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_datasets.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Merge the datasets on the keys — merge_datasets","text":"merged_dataset (list) containing: expr (list call) code needed replicate merged dataset. columns_source (list) column names selected particular selector. list element contains named character vector : Values names columns ANL. case column name selected one selector gets prefixed id selector. example two data_extract id x, y, duplicated selected variable (example AGE) prefixed x.AGE y.AGE. Names vector denote names variables input dataset. attr(,\"dataname\") indicate dataset variable merged . attr(, \"always selected\") denote names variables need always selected. keys (list) keys merged dataset. filter_info (list) information given user. information defines filters applied data. Additionally defines variables selected data sets.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_datasets.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Merge the datasets on the keys — merge_datasets","text":"Internally function uses calls allow reproducibility.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_datasets.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Merge the datasets on the keys — merge_datasets","text":"","code":"if (FALSE) { # inside teal module server function response <- data_extract_srv(   id = \"reponse\",   data_extract_spec = response_spec,   datasets = datasets ) regressor <- data_extract_srv(   id = \"regressor\",   data_extract_spec = regressor_spec,   datasets = datasets ) merged_data <- merge_datasets(list(regressor(), response())) }"},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_expression_module.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Merge expression module — merge_expression_module","text":"","code":"merge_expression_module(   datasets,   join_keys = NULL,   data_extract,   merge_function = \"dplyr::full_join\",   anl_name = \"ANL\",   id = \"merge_id\" )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_expression_module.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Merge expression module — merge_expression_module","text":"datasets (named list reactive non-reactive data.frame) object containing data list data.frame. passing list non-reactive data.frame objects, converted reactive data.frame objects internally. join_keys (JoinKeys) variables used join keys datasets datasets. used extract keys every dataset. data_extract (named list data_extract_spec) merge_function (character(1)) character string function accepts arguments x, y perform merging datasets. anl_name (character(1)) Name analysis dataset. id ID string corresponds ID used call module's UI function.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_expression_module.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Merge expression module — merge_expression_module","text":"reactive expression output merge_expression_srv().","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_expression_module.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Merge expression module — merge_expression_module","text":"function convenient wrapper combine data_extract_multiple_srv() merge_expression_srv() additional processing required. Compare example found merge_expression_srv().","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_expression_module.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Merge expression module — merge_expression_module","text":"","code":"library(shiny) ADSL <- data.frame(   STUDYID = \"A\",   USUBJID = LETTERS[1:10],   SEX = rep(c(\"F\", \"M\"), 5),   AGE = rpois(10, 30),   BMRKR1 = rlnorm(10) ) ADLB <- expand.grid(   STUDYID = \"A\",   USUBJID = LETTERS[1:10],   PARAMCD = c(\"ALT\", \"CRP\", \"IGA\"),   AVISIT = c(\"SCREENING\", \"BASELINE\", \"WEEK 1 DAY 8\", \"WEEK 2 DAY 15\") ) ADLB$AVAL <- rlnorm(120) ADLB$CHG <- rnorm(120)  data_list <- list(   ADSL = ADSL,   ADLB = ADLB )  join_keys <- teal.data::join_keys(   teal.data::join_key(\"ADSL\", \"ADSL\", c(\"STUDYID\", \"USUBJID\")),   teal.data::join_key(\"ADSL\", \"ADLB\", c(\"STUDYID\", \"USUBJID\")),   teal.data::join_key(\"ADLB\", \"ADLB\", c(\"STUDYID\", \"USUBJID\", \"PARAMCD\", \"AVISIT\")) )   adsl_extract <- data_extract_spec(   dataname = \"ADSL\",   select = select_spec(     label = \"Select variable:\",     choices = c(\"AGE\", \"BMRKR1\"),     selected = \"AGE\",     multiple = TRUE,     fixed = FALSE   ) ) adlb_extract <- data_extract_spec(   dataname = \"ADLB\",   filter = filter_spec(vars = \"PARAMCD\", choices = c(\"ALT\", \"CRP\", \"IGA\"), selected = \"ALT\"),   select = select_spec(     label = \"Select variable:\",     choices = c(\"AVAL\", \"CHG\"),     selected = \"AVAL\",     multiple = TRUE,     fixed = FALSE   ) ) app <- shinyApp(   ui = fluidPage(     teal.widgets::standard_layout(       output = div(         verbatimTextOutput(\"expr\"),         dataTableOutput(\"data\")       ),       encoding = tagList(         data_extract_ui(\"adsl_var\", label = \"ADSL selection\", adsl_extract),         data_extract_ui(\"adlb_var\", label = \"ADLB selection\", adlb_extract)       )     )   ),   server = function(input, output, session) {     data_q <- teal.code::new_qenv()      data_q <- teal.code::eval_code(       data_q,       \"ADSL <- data.frame(         STUDYID = 'A',         USUBJID = LETTERS[1:10],         SEX = rep(c('F', 'M'), 5),         AGE = rpois(10, 30),         BMRKR1 = rlnorm(10)       )\"     )      data_q <- teal.code::eval_code(       data_q,       \"ADLB <- expand.grid(         STUDYID = 'A',         USUBJID = LETTERS[1:10],         PARAMCD = c('ALT', 'CRP', 'IGA'),         AVISIT = c('SCREENING', 'BASELINE', 'WEEK 1 DAY 8', 'WEEK 2 DAY 15'),         AVAL = rlnorm(120),         CHG = rlnorm(120)        )\"     )      merged_data <- merge_expression_module(       data_extract = list(adsl_var = adsl_extract, adlb_var = adlb_extract),       datasets = data_list,       join_keys = join_keys,       merge_function = \"dplyr::left_join\"     )      code_merge <- reactive({       for (exp in merged_data()$expr) data_q <- teal.code::eval_code(data_q, exp)       data_q     })      output$expr <- renderText(paste(merged_data()$expr, collapse = \"\\n\"))     output$data <- renderDataTable(code_merge()[[\"ANL\"]])   } ) if (FALSE) { runApp(app) }"},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_expression_srv.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data merge module server — merge_expression_srv","text":"","code":"merge_expression_srv(   id = \"merge_id\",   selector_list,   datasets,   join_keys,   merge_function = \"dplyr::full_join\",   anl_name = \"ANL\" )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_expression_srv.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data merge module server — merge_expression_srv","text":"id ID string corresponds ID used call module's UI function. selector_list (reactive) output data_extract_multiple_srv() reactive named list outputs data_extract_srv(). using reactive named list, names must identical shiny ids respective data_extract_ui(). datasets (named list reactive non-reactive data.frame) object containing data list data.frame. passing list non-reactive data.frame objects, converted reactive data.frame objects internally. join_keys (JoinKeys) variables used join keys datasets datasets. used extract keys every dataset. merge_function (character(1) reactive) character string function accepts arguments x, y perform merging datasets. anl_name (character(1)) Name analysis dataset.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_expression_srv.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data merge module server — merge_expression_srv","text":"reactive expression output merge_datasets().","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_expression_srv.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Data merge module server — merge_expression_srv","text":"additional processing data_extract list input required, merge_expression_srv() can combined data_extract_multiple_srv() data_extract_srv() influence selector_list input. Compare example found merge_expression_module().","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_expression_srv.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Data merge module server — merge_expression_srv","text":"","code":"library(shiny)  ADSL <- data.frame(   STUDYID = \"A\",   USUBJID = LETTERS[1:10],   SEX = rep(c(\"F\", \"M\"), 5),   AGE = rpois(10, 30),   BMRKR1 = rlnorm(10) )  ADLB <- expand.grid(   STUDYID = \"A\",   USUBJID = LETTERS[1:10],   PARAMCD = c(\"ALT\", \"CRP\", \"IGA\"),   AVISIT = c(\"SCREENING\", \"BASELINE\", \"WEEK 1 DAY 8\", \"WEEK 2 DAY 15\") ) ADLB$AVAL <- rlnorm(120) ADLB$CHG <- rlnorm(120)  data_list <- list(   ADSL = ADSL,   ADLB = ADLB )  join_keys <- teal.data::join_keys(   teal.data::join_key(\"ADSL\", \"ADSL\", c(\"STUDYID\", \"USUBJID\")),   teal.data::join_key(\"ADSL\", \"ADLB\", c(\"STUDYID\", \"USUBJID\")),   teal.data::join_key(\"ADLB\", \"ADLB\", c(\"STUDYID\", \"USUBJID\", \"PARAMCD\", \"AVISIT\")) )  adsl_extract <- data_extract_spec(   dataname = \"ADSL\",   select = select_spec(     label = \"Select variable:\",     choices = c(\"AGE\", \"BMRKR1\"),     selected = \"AGE\",     multiple = TRUE,     fixed = FALSE   ) ) adlb_extract <- data_extract_spec(   dataname = \"ADLB\",   filter = filter_spec(vars = \"PARAMCD\", choices = c(\"ALT\", \"CRP\", \"IGA\"), selected = \"ALT\"),   select = select_spec(     label = \"Select variable:\",     choices = c(\"AVAL\", \"CHG\"),     selected = \"AVAL\",     multiple = TRUE,     fixed = FALSE   ) )  app <- shinyApp(   ui = fluidPage(     teal.widgets::standard_layout(       output = div(         verbatimTextOutput(\"expr\"),         dataTableOutput(\"data\")       ),       encoding = tagList(         data_extract_ui(\"adsl_var\", label = \"ADSL selection\", adsl_extract),         data_extract_ui(\"adlb_var\", label = \"ADLB selection\", adlb_extract)       )     )   ),   server = function(input, output, session) {     data_q <- teal.code::new_qenv()      data_q <- teal.code::eval_code(       data_q,       \"ADSL <- data.frame(         STUDYID = 'A',         USUBJID = LETTERS[1:10],         SEX = rep(c('F', 'M'), 5),         AGE = rpois(10, 30),         BMRKR1 = rlnorm(10)       )\"     )      data_q <- teal.code::eval_code(       data_q,       \"ADLB <- expand.grid(         STUDYID = 'A',         USUBJID = LETTERS[1:10],         PARAMCD = c('ALT', 'CRP', 'IGA'),         AVISIT = c('SCREENING', 'BASELINE', 'WEEK 1 DAY 8', 'WEEK 2 DAY 15'),         AVAL = rlnorm(120),         CHG = rlnorm(120)       )\"     )      selector_list <- data_extract_multiple_srv(       list(adsl_var = adsl_extract, adlb_var = adlb_extract),       datasets = data_list     )     merged_data <- merge_expression_srv(       selector_list = selector_list,       datasets = data_list,       join_keys = join_keys,       merge_function = \"dplyr::left_join\"     )      code_merge <- reactive({       for (exp in merged_data()$expr) data_q <- teal.code::eval_code(data_q, exp)       data_q     })      output$expr <- renderText(paste(merged_data()$expr, collapse = \"\\n\"))     output$data <- renderDataTable(code_merge()[[\"ANL\"]])   } ) if (FALSE) { runApp(app) }"},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_selectors.html","id":null,"dir":"Reference","previous_headings":"","what":"Merge selectors - select item if all of dataname, reshape, filters and keys items are identical — merge_selectors","title":"Merge selectors - select item if all of dataname, reshape, filters and keys items are identical — merge_selectors","text":"Merge selectors - select item dataname, reshape, filters keys items identical","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_selectors.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Merge selectors - select item if all of dataname, reshape, filters and keys items are identical — merge_selectors","text":"","code":"merge_selectors(selector_list)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_selectors.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Merge selectors - select item if all of dataname, reshape, filters and keys items are identical — merge_selectors","text":"selector_list (reactive) output data_extract_multiple_srv() reactive named list outputs data_extract_srv(). using reactive named list, names must identical shiny ids respective data_extract_ui().","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_selectors.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Merge selectors - select item if all of dataname, reshape, filters and keys items are identical — merge_selectors","text":"error nothing","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_selectors.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Merge selectors - select item if all of dataname, reshape, filters and keys items are identical — merge_selectors","text":"","code":"selector_list <- list(   # ADSL - SEX   list(     filters = NULL, select = \"AGE\", always_selected = NULL,     reshape = FALSE, dataname = \"ADSL\",     internal_id = \"adsl_var\", keys = c(\"STUDYID\", \"USUBJID\")   ),    # ADSL - AGE   list(     filters = NULL, select = \"SEX\", always_selected = NULL,     reshape = FALSE, dataname = \"ADSL\",     internal_id = \"adsl_var2\", keys = c(\"STUDYID\", \"USUBJID\")   ),    # ADLB - AVAL   list(     filters = NULL, select = \"AVAL\", always_selected = NULL,     reshape = FALSE, dataname = \"ADLB\",     internal_id = \"adlb_var\", keys = c(       \"STUDYID\", \"USUBJID\",       \"PARAMCD\", \"AVISIT\"     )   ) ) merged_selectors <- teal.transform:::merge_selectors(selector_list) merged_selectors #> [[1]] #> [[1]][[1]] #> [[1]][[1]]$filters #> NULL #>  #> [[1]][[1]]$select #> [1] \"AGE\" \"SEX\" #>  #> [[1]][[1]]$always_selected #> NULL #>  #> [[1]][[1]]$reshape #> [1] FALSE #>  #> [[1]][[1]]$dataname #> [1] \"ADSL\" #>  #> [[1]][[1]]$internal_id #> [1] \"adsl_var\" #>  #> [[1]][[1]]$keys #> [1] \"STUDYID\" \"USUBJID\" #>  #>  #> [[1]][[2]] #> [[1]][[2]]$filters #> NULL #>  #> [[1]][[2]]$select #> [1] \"AVAL\" #>  #> [[1]][[2]]$always_selected #> NULL #>  #> [[1]][[2]]$reshape #> [1] FALSE #>  #> [[1]][[2]]$dataname #> [1] \"ADLB\" #>  #> [[1]][[2]]$internal_id #> [1] \"adlb_var\" #>  #> [[1]][[2]]$keys #> [1] \"STUDYID\" \"USUBJID\" \"PARAMCD\" \"AVISIT\"  #>  #>  #>  #> [[2]] #>   adsl_var  adsl_var2   adlb_var  #> \"adsl_var\" \"adsl_var\" \"adlb_var\"  #>"},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/no_selected_as_NULL.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Check select choices for no choice made — no_selected_as_NULL","text":"","code":"no_selected_as_NULL(x)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/no_selected_as_NULL.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Check select choices for no choice made — no_selected_as_NULL","text":"x (character) Word shall checked NULL, empty, \"---selection\"","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/no_selected_as_NULL.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Check select choices for no choice made — no_selected_as_NULL","text":"word NULL","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/parse_merge_key_i.html","id":null,"dir":"Reference","previous_headings":"","what":"Parses merge keys — parse_merge_key_i","title":"Parses merge keys — parse_merge_key_i","text":"Parses merge keys","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/parse_merge_key_i.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Parses merge keys — parse_merge_key_i","text":"","code":"parse_merge_key_i(   selector_list,   idx,   dplyr_call_data = get_dplyr_call_data(selector_list),   merge_key = get_merge_key_i(selector_list, idx, dplyr_call_data) )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/parse_merge_key_i.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Parses merge keys — parse_merge_key_i","text":"selector_list (reactive) output data_extract_multiple_srv() reactive named list outputs data_extract_srv(). using reactive named list, names must identical shiny ids respective data_extract_ui(). idx optional (integer) current selector index selectors list dplyr_call_data (list) simplified selectors aggregated set filters, merge_key keys obtained get_merge_key_i","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADAE.html","id":null,"dir":"Reference","previous_headings":"","what":"Random adverse events — rADAE","title":"Random adverse events — rADAE","text":"Random adverse events","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADAE.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Random adverse events — rADAE","text":"","code":"rADAE"},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADAE.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Random adverse events — rADAE","text":"object class tbl_df (inherits tbl, data.frame) 1934 rows 92 columns.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADAE.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Random adverse events — rADAE","text":"internal","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADLB.html","id":null,"dir":"Reference","previous_headings":"","what":"Random lab analysis — rADLB","title":"Random lab analysis — rADLB","text":"Random lab analysis","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADLB.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Random lab analysis — rADLB","text":"","code":"rADLB"},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADLB.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Random lab analysis — rADLB","text":"object class tbl_df (inherits tbl, data.frame) 8400 rows 102 columns.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADLB.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Random lab analysis — rADLB","text":"internal","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADRS.html","id":null,"dir":"Reference","previous_headings":"","what":"Random response — rADRS","title":"Random response — rADRS","text":"Random response","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADRS.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Random response — rADRS","text":"","code":"rADRS"},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADRS.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Random response — rADRS","text":"object class tbl_df (inherits tbl, data.frame) 3200 rows 65 columns.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADRS.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Random response — rADRS","text":"internal","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADSL.html","id":null,"dir":"Reference","previous_headings":"","what":"Random patient listing — rADSL","title":"Random patient listing — rADSL","text":"Random patient listing","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADSL.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Random patient listing — rADSL","text":"","code":"rADSL"},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADSL.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Random patient listing — rADSL","text":"object class tbl_df (inherits tbl, data.frame) 400 rows 55 columns.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADSL.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Random patient listing — rADSL","text":"internal","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADTTE.html","id":null,"dir":"Reference","previous_headings":"","what":"Random Time to Event Analysis Dataset — rADTTE","title":"Random Time to Event Analysis Dataset — rADTTE","text":"Random Time Event Analysis Dataset","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADTTE.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Random Time to Event Analysis Dataset — rADTTE","text":"","code":"rADTTE"},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADTTE.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Random Time to Event Analysis Dataset — rADTTE","text":"object class tbl_df (inherits tbl, data.frame) 2000 rows 67 columns.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADTTE.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Random Time to Event Analysis Dataset — rADTTE","text":"internal","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/resolve.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Resolve delayed inputs by evaluating the code within the provided datasets — resolve","text":"","code":"resolve(x, datasets, keys = NULL)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/resolve.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Resolve delayed inputs by evaluating the code within the provided datasets — resolve","text":"x Object class delayed_data resolve. datasets named list type data.frame use evaluation. keys named list type character used keys dataset. names list must exactly datasets.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/resolve.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Resolve delayed inputs by evaluating the code within the provided datasets — resolve","text":"Resolved object.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/resolve.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Resolve delayed inputs by evaluating the code within the provided datasets — resolve","text":"","code":"ADSL <- teal.transform::rADSL attr(ADSL, \"keys\") <- teal.data::get_cdisc_keys(\"ADSL\") data_list <- list(ADSL = shiny::reactive(ADSL)) keys <- list(ADSL = attr(ADSL, \"keys\")) shiny::isolate({   # value_choices example   v1 <- value_choices(\"ADSL\", \"SEX\", \"SEX\")   v1   teal.transform:::resolve(v1, data_list, keys)    # variable_choices example   v2 <- variable_choices(\"ADSL\", c(\"BMRKR1\", \"BMRKR2\"))   v2   teal.transform:::resolve(v2, data_list, keys)    # data_extract_spec example   adsl_filter <- filter_spec(     vars = variable_choices(\"ADSL\", \"SEX\"),     sep = \"-\",     choices = value_choices(\"ADSL\", \"SEX\", \"SEX\"),     selected = \"F\",     multiple = FALSE,     label = \"Choose endpoint and Censor\"   )    adsl_select <- select_spec(     label = \"Select variable:\",     choices = variable_choices(\"ADSL\", c(\"BMRKR1\", \"BMRKR2\")),     selected = \"BMRKR1\",     multiple = FALSE,     fixed = FALSE   )    adsl_de <- data_extract_spec(     dataname = \"ADSL\",     select = adsl_select,     filter = adsl_filter   )    teal.transform:::resolve(adsl_filter, data_list, keys)   teal.transform:::resolve(adsl_select, data_list, keys)   teal.transform:::resolve(adsl_de, data_list, keys)    # nested list (arm_ref_comp)   arm_ref_comp <- list(     ARMCD = list(       ref = variable_choices(\"ADSL\"),       comp = variable_choices(\"ADSL\")     )   )    teal.transform:::resolve(arm_ref_comp, data_list, keys) }) #> $ARMCD #> $ARMCD$ref #> number of choices: 55  #>  #> STUDYID: Study Identifier #> USUBJID: Unique Subject Identifier #> SUBJID: Subject Identifier for the Study #> SITEID: Study Site Identifier #> AGE: Age #> AGEU: Age Units #> SEX: Sex #> RACE: Race #> ETHNIC: Ethnicity #> COUNTRY: Country #> DTHFL: Subject Death Flag #> INVID: Investigator Identifier #> INVNAM: Investigator Name #> ARM: Description of Planned Arm #> ARMCD: Planned Arm Code #> ACTARM: Description of Actual Arm #> ACTARMCD: Actual Arm Code #> TRT01P: Planned Treatment for Period 01 #> TRT01A: Actual Treatment for Period 01 #> TRT02P: Planned Treatment for Period 02 #> TRT02A: Actual Treatment for Period 02 #> REGION1: Geographic Region 1 #> STRATA1: Stratification Factor 1 #> STRATA2: Stratification Factor 2 #> BMRKR1: Continuous Level Biomarker 1 #> BMRKR2: Categorical Level Biomarker 2 #> ITTFL: Intent-To-Treat Population Flag #> SAFFL: Safety Population Flag #> BMEASIFL: Response Evaluable Population Flag #> BEP01FL: Biomarker Evaluable Population Flag #> AEWITHFL: AE Leading to Drug Withdrawal Flag #> RANDDT: Date of Randomization #> TRTSDTM: Datetime of First Exposure to Treatment #> TRTEDTM: Datetime of Last Exposure to Treatment #> TRT01SDTM: Datetime of First Exposure to Treatment in Period 01 #> TRT01EDTM: Datetime of Last Exposure in Period 01 #> TRT02SDTM: Datetime of First Exposure to Treatment in Period 02 #> TRT02EDTM: Datetime of Last Exposure to Treatment in Period 02 #> AP01SDTM: Period 01 Start Datetime #> AP01EDTM: Period 01 End Datetime #> AP02SDTM: Period 02 Start Datetime #> AP02EDTM: Period 02 End Datetime #> EOSSTT: End of Study Status #> EOTSTT: End of Treatment Status #> EOSDT: End of Study Date #> EOSDY: End of Study Relative Day #> DCSREAS: Reason for Discontinuation from Study #> DTHDT: Date of Death #> DTHCAUS: Cause of Death #> DTHCAT: Cause of Death Category #> LDDTHELD: Elapsed Days from Last Dose to Death #> LDDTHGR1: Last Dose to Death - Days Elapsed Grp 1 #> LSTALVDT: Date Last Known Alive #> DTHADY: Relative Day of Death #> ADTHAUT: Autopsy Performed #>  #>  #> $ARMCD$comp #> number of choices: 55  #>  #> STUDYID: Study Identifier #> USUBJID: Unique Subject Identifier #> SUBJID: Subject Identifier for the Study #> SITEID: Study Site Identifier #> AGE: Age #> AGEU: Age Units #> SEX: Sex #> RACE: Race #> ETHNIC: Ethnicity #> COUNTRY: Country #> DTHFL: Subject Death Flag #> INVID: Investigator Identifier #> INVNAM: Investigator Name #> ARM: Description of Planned Arm #> ARMCD: Planned Arm Code #> ACTARM: Description of Actual Arm #> ACTARMCD: Actual Arm Code #> TRT01P: Planned Treatment for Period 01 #> TRT01A: Actual Treatment for Period 01 #> TRT02P: Planned Treatment for Period 02 #> TRT02A: Actual Treatment for Period 02 #> REGION1: Geographic Region 1 #> STRATA1: Stratification Factor 1 #> STRATA2: Stratification Factor 2 #> BMRKR1: Continuous Level Biomarker 1 #> BMRKR2: Categorical Level Biomarker 2 #> ITTFL: Intent-To-Treat Population Flag #> SAFFL: Safety Population Flag #> BMEASIFL: Response Evaluable Population Flag #> BEP01FL: Biomarker Evaluable Population Flag #> AEWITHFL: AE Leading to Drug Withdrawal Flag #> RANDDT: Date of Randomization #> TRTSDTM: Datetime of First Exposure to Treatment #> TRTEDTM: Datetime of Last Exposure to Treatment #> TRT01SDTM: Datetime of First Exposure to Treatment in Period 01 #> TRT01EDTM: Datetime of Last Exposure in Period 01 #> TRT02SDTM: Datetime of First Exposure to Treatment in Period 02 #> TRT02EDTM: Datetime of Last Exposure to Treatment in Period 02 #> AP01SDTM: Period 01 Start Datetime #> AP01EDTM: Period 01 End Datetime #> AP02SDTM: Period 02 Start Datetime #> AP02EDTM: Period 02 End Datetime #> EOSSTT: End of Study Status #> EOTSTT: End of Treatment Status #> EOSDT: End of Study Date #> EOSDY: End of Study Relative Day #> DCSREAS: Reason for Discontinuation from Study #> DTHDT: Date of Death #> DTHCAUS: Cause of Death #> DTHCAT: Cause of Death Category #> LDDTHELD: Elapsed Days from Last Dose to Death #> LDDTHGR1: Last Dose to Death - Days Elapsed Grp 1 #> LSTALVDT: Date Last Known Alive #> DTHADY: Relative Day of Death #> ADTHAUT: Autopsy Performed #>  #>  #>"},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/resolve_delayed.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Resolve delayed inputs by evaluating the code within the provided datasets — resolve_delayed","text":"","code":"resolve_delayed(x, datasets, keys)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/resolve_delayed.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Resolve delayed inputs by evaluating the code within the provided datasets — resolve_delayed","text":"x (delayed_data, list) resolve. datasets (FilteredData named list) use reference resolve x. keys (named list) primary keys dataset datasets. names(keys) match names(datasets)","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/resolve_delayed.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Resolve delayed inputs by evaluating the code within the provided datasets — resolve_delayed","text":"Resolved object.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/resolve_delayed.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Resolve delayed inputs by evaluating the code within the provided datasets — resolve_delayed","text":"","code":"ADSL <- teal.transform::rADSL shiny::isolate({   ds <- teal.slice::init_filtered_data(     list(ADSL = list(dataset = ADSL))   )    # value_choices example   v1 <- value_choices(\"ADSL\", \"SEX\", \"SEX\")   v1   resolve_delayed(v1, ds)    # variable_choices example   v2 <- variable_choices(\"ADSL\", c(\"BMRKR1\", \"BMRKR2\"))   v2   resolve_delayed(v2, ds)    # data_extract_spec example   adsl_filter <- filter_spec(     vars = variable_choices(\"ADSL\", \"SEX\"),     sep = \"-\",     choices = value_choices(\"ADSL\", \"SEX\", \"SEX\"),     selected = \"F\",     multiple = FALSE,     label = \"Choose endpoint and Censor\"   )    adsl_select <- select_spec(     label = \"Select variable:\",     choices = variable_choices(\"ADSL\", c(\"BMRKR1\", \"BMRKR2\")),     selected = \"BMRKR1\",     multiple = FALSE,     fixed = FALSE   )    adsl_de <- data_extract_spec(     dataname = \"ADSL\",     select = adsl_select,     filter = adsl_filter   )    resolve_delayed(adsl_filter, ds)   resolve_delayed(adsl_select, ds)   resolve_delayed(adsl_de, ds)    # nested list (arm_ref_comp)   arm_ref_comp <- list(     ARMCD = list(       ref = variable_choices(\"ADSL\"),       comp = variable_choices(\"ADSL\")     )   )    resolve_delayed(arm_ref_comp, ds) }) #> $ARMCD #> $ARMCD$ref #> number of choices: 55  #>  #> STUDYID: Study Identifier #> USUBJID: Unique Subject Identifier #> SUBJID: Subject Identifier for the Study #> SITEID: Study Site Identifier #> AGE: Age #> AGEU: Age Units #> SEX: Sex #> RACE: Race #> ETHNIC: Ethnicity #> COUNTRY: Country #> DTHFL: Subject Death Flag #> INVID: Investigator Identifier #> INVNAM: Investigator Name #> ARM: Description of Planned Arm #> ARMCD: Planned Arm Code #> ACTARM: Description of Actual Arm #> ACTARMCD: Actual Arm Code #> TRT01P: Planned Treatment for Period 01 #> TRT01A: Actual Treatment for Period 01 #> TRT02P: Planned Treatment for Period 02 #> TRT02A: Actual Treatment for Period 02 #> REGION1: Geographic Region 1 #> STRATA1: Stratification Factor 1 #> STRATA2: Stratification Factor 2 #> BMRKR1: Continuous Level Biomarker 1 #> BMRKR2: Categorical Level Biomarker 2 #> ITTFL: Intent-To-Treat Population Flag #> SAFFL: Safety Population Flag #> BMEASIFL: Response Evaluable Population Flag #> BEP01FL: Biomarker Evaluable Population Flag #> AEWITHFL: AE Leading to Drug Withdrawal Flag #> RANDDT: Date of Randomization #> TRTSDTM: Datetime of First Exposure to Treatment #> TRTEDTM: Datetime of Last Exposure to Treatment #> TRT01SDTM: Datetime of First Exposure to Treatment in Period 01 #> TRT01EDTM: Datetime of Last Exposure in Period 01 #> TRT02SDTM: Datetime of First Exposure to Treatment in Period 02 #> TRT02EDTM: Datetime of Last Exposure to Treatment in Period 02 #> AP01SDTM: Period 01 Start Datetime #> AP01EDTM: Period 01 End Datetime #> AP02SDTM: Period 02 Start Datetime #> AP02EDTM: Period 02 End Datetime #> EOSSTT: End of Study Status #> EOTSTT: End of Treatment Status #> EOSDT: End of Study Date #> EOSDY: End of Study Relative Day #> DCSREAS: Reason for Discontinuation from Study #> DTHDT: Date of Death #> DTHCAUS: Cause of Death #> DTHCAT: Cause of Death Category #> LDDTHELD: Elapsed Days from Last Dose to Death #> LDDTHGR1: Last Dose to Death - Days Elapsed Grp 1 #> LSTALVDT: Date Last Known Alive #> DTHADY: Relative Day of Death #> ADTHAUT: Autopsy Performed #>  #>  #> $ARMCD$comp #> number of choices: 55  #>  #> STUDYID: Study Identifier #> USUBJID: Unique Subject Identifier #> SUBJID: Subject Identifier for the Study #> SITEID: Study Site Identifier #> AGE: Age #> AGEU: Age Units #> SEX: Sex #> RACE: Race #> ETHNIC: Ethnicity #> COUNTRY: Country #> DTHFL: Subject Death Flag #> INVID: Investigator Identifier #> INVNAM: Investigator Name #> ARM: Description of Planned Arm #> ARMCD: Planned Arm Code #> ACTARM: Description of Actual Arm #> ACTARMCD: Actual Arm Code #> TRT01P: Planned Treatment for Period 01 #> TRT01A: Actual Treatment for Period 01 #> TRT02P: Planned Treatment for Period 02 #> TRT02A: Actual Treatment for Period 02 #> REGION1: Geographic Region 1 #> STRATA1: Stratification Factor 1 #> STRATA2: Stratification Factor 2 #> BMRKR1: Continuous Level Biomarker 1 #> BMRKR2: Categorical Level Biomarker 2 #> ITTFL: Intent-To-Treat Population Flag #> SAFFL: Safety Population Flag #> BMEASIFL: Response Evaluable Population Flag #> BEP01FL: Biomarker Evaluable Population Flag #> AEWITHFL: AE Leading to Drug Withdrawal Flag #> RANDDT: Date of Randomization #> TRTSDTM: Datetime of First Exposure to Treatment #> TRTEDTM: Datetime of Last Exposure to Treatment #> TRT01SDTM: Datetime of First Exposure to Treatment in Period 01 #> TRT01EDTM: Datetime of Last Exposure in Period 01 #> TRT02SDTM: Datetime of First Exposure to Treatment in Period 02 #> TRT02EDTM: Datetime of Last Exposure to Treatment in Period 02 #> AP01SDTM: Period 01 Start Datetime #> AP01EDTM: Period 01 End Datetime #> AP02SDTM: Period 02 Start Datetime #> AP02EDTM: Period 02 End Datetime #> EOSSTT: End of Study Status #> EOTSTT: End of Treatment Status #> EOSDT: End of Study Date #> EOSDY: End of Study Relative Day #> DCSREAS: Reason for Discontinuation from Study #> DTHDT: Date of Death #> DTHCAUS: Cause of Death #> DTHCAT: Cause of Death Category #> LDDTHELD: Elapsed Days from Last Dose to Death #> LDDTHGR1: Last Dose to Death - Days Elapsed Grp 1 #> LSTALVDT: Date Last Known Alive #> DTHADY: Relative Day of Death #> ADTHAUT: Autopsy Performed #>  #>  #>"},{"path":"https://insightsengineering.github.io/teal.transform/reference/resolve_delayed_expr.html","id":null,"dir":"Reference","previous_headings":"","what":"Resolve expression after delayed data are loaded — resolve_delayed_expr","title":"Resolve expression after delayed data are loaded — resolve_delayed_expr","text":"Resolve expression delayed data loaded","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/resolve_delayed_expr.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Resolve expression after delayed data are loaded — resolve_delayed_expr","text":"","code":"resolve_delayed_expr(x, ds, is_value_choices)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/resolve_delayed_expr.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Resolve expression after delayed data are loaded — resolve_delayed_expr","text":"x (function) Function applied dataset. must take single argument \"data\" return character vector columns / values. ds (data.frame) TealDataset function applied . is_value_choices (logical) Determines check returned value applied.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/resolve_delayed_expr.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Resolve expression after delayed data are loaded — resolve_delayed_expr","text":"Character vector - result calling function x dataset ds.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/resolve_delayed_expr.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Resolve expression after delayed data are loaded — resolve_delayed_expr","text":"","code":"if (FALSE) { # get only possible factor variables from mtcars dataset resolve_delayed_expr(   function(data) {     idx <- vapply(data, function(x) is.numeric(x) && length(unique(x)) <= 6, logical(1))     colnames(data)[idx]   },   ds = mtcars,   is_value_choices = FALSE ) }"},{"path":"https://insightsengineering.github.io/teal.transform/reference/select_spec.html","id":null,"dir":"Reference","previous_headings":"","what":"Column selection input specification — select_spec","title":"Column selection input specification — select_spec","text":"select_spec used inside teal create selectInput select columns dataset.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/select_spec.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Column selection input specification — select_spec","text":"","code":"select_spec(   choices,   selected = if (inherits(choices, \"delayed_data\")) NULL else choices[1],   multiple = length(selected) > 1 || inherits(selected, \"all_choices\"),   fixed = FALSE,   always_selected = NULL,   ordered = FALSE,   label = \"Select\" )  select_spec.delayed_data(   choices,   selected = NULL,   multiple = length(selected) > 1,   fixed = FALSE,   always_selected = NULL,   ordered = FALSE,   label = NULL )  select_spec.default(   choices,   selected = choices[1],   multiple = length(selected) > 1,   fixed = FALSE,   always_selected = NULL,   ordered = FALSE,   label = NULL )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/select_spec.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Column selection input specification — select_spec","text":"choices (character) (delayed_data) object. Named character vector define choices shiny selectInput. columns dataset defined data_extract_spec called. delayed_data objects can created via variable_choices value_choices. selected optional (character NULL all_choices delayed_data object). Named character vector define selected values shiny selectInput. Passing all_choices() object indicates selecting possible choices. Defaults first value choices NULL delayed data loading. multiple (logical) Whether multiple values shall allowed shiny selectInput. fixed optional (logical). data_extract_spec specific feature hide choices selected case needed. Setting fixed TRUE allow user select columns. lead selection columns dataset defined developer app. always_selected (character) Additional column names data set always selected ordered (logical(1)) Flags whether selection order tracked. label optional (character). Define label top specific shiny selectInput. default value \"Select\".","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/select_spec.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Column selection input specification — select_spec","text":"select_spec-S3 class object delayed_select_spec-S3-class object. contains input values. select_spec, function double checks choices selected inputs.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/select_spec.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Column selection input specification — select_spec","text":"","code":"# Selection with just one column allowed select_spec(   choices = c(\"AVAL\", \"BMRKR1\", \"AGE\"),   selected = c(\"AVAL\"),   multiple = FALSE,   fixed = FALSE,   label = \"Column\" ) #> $choices #>     AVAL   BMRKR1      AGE  #>   \"AVAL\" \"BMRKR1\"    \"AGE\"  #>  #> $selected #>   AVAL  #> \"AVAL\"  #>  #> $multiple #> [1] FALSE #>  #> $fixed #> [1] FALSE #>  #> $always_selected #> NULL #>  #> $ordered #> [1] FALSE #>  #> $label #> [1] \"Column\" #>  #> attr(,\"class\") #> [1] \"select_spec\"  # Selection with just multiple columns allowed select_spec(   choices = c(\"AVAL\", \"BMRKR1\", \"AGE\"),   selected = c(\"AVAL\", \"BMRKR1\"),   multiple = TRUE,   fixed = FALSE,   label = \"Columns\" ) #> $choices #>     AVAL   BMRKR1      AGE  #>   \"AVAL\" \"BMRKR1\"    \"AGE\"  #>  #> $selected #>     AVAL   BMRKR1  #>   \"AVAL\" \"BMRKR1\"  #>  #> $multiple #> [1] TRUE #>  #> $fixed #> [1] FALSE #>  #> $always_selected #> NULL #>  #> $ordered #> [1] FALSE #>  #> $label #> [1] \"Columns\" #>  #> attr(,\"class\") #> [1] \"select_spec\"  # Selection without user access select_spec(   choices = c(\"AVAL\", \"BMRKR1\"),   selected = c(\"AVAL\", \"BMRKR1\"),   multiple = TRUE,   fixed = TRUE,   label = \"Columns\" ) #> $choices #>     AVAL   BMRKR1  #>   \"AVAL\" \"BMRKR1\"  #>  #> $selected #>     AVAL   BMRKR1  #>   \"AVAL\" \"BMRKR1\"  #>  #> $multiple #> [1] TRUE #>  #> $fixed #> [1] TRUE #>  #> $always_selected #> NULL #>  #> $ordered #> [1] FALSE #>  #> $label #> [1] \"Columns\" #>  #> attr(,\"class\") #> [1] \"select_spec\"  # Delayed version select_spec(   label = \"Select variable:\",   choices = variable_choices(\"ADSL\", c(\"BMRKR1\", \"BMRKR2\")),   selected = \"BMRKR1\",   multiple = FALSE,   fixed = FALSE ) #> select_spec with delayed data: ADSL #> $ choices #>   variable_choices with delayed data: ADSL #>   $ data #>   [1] \"ADSL\" #>   $ subset #>   [1] \"BMRKR1\" \"BMRKR2\" #>   $ key #>   NULL #> $ selected #> [1] \"BMRKR1\" #> $ multiple #> [1] FALSE #> $ fixed #> [1] FALSE #> $ always_selected #> NULL #> $ ordered #> [1] FALSE #> $ label #> [1] \"Select variable:\"  # all_choices passed to selected select_spec(   label = \"Select variable:\",   choices = variable_choices(\"ADSL\", c(\"BMRKR1\", \"BMRKR2\")),   selected = all_choices() ) #> select_spec with delayed data: ADSL #> $ choices #>   variable_choices with delayed data: ADSL #>   $ data #>   [1] \"ADSL\" #>   $ subset #>   [1] \"BMRKR1\" \"BMRKR2\" #>   $ key #>   NULL #> $ selected #>   variable_choices with delayed data: ADSL #>   $ data #>   [1] \"ADSL\" #>   $ subset #>   [1] \"BMRKR1\" \"BMRKR2\" #>   $ key #>   NULL #> $ multiple #> [1] TRUE #> $ fixed #> [1] FALSE #> $ always_selected #> NULL #> $ ordered #> [1] FALSE #> $ label #> [1] \"Select variable:\"  # Both below objects are semantically the same select_spec(choices = variable_choices(\"ADSL\"), selected = variable_choices(\"ADSL\")) #> select_spec with delayed data: ADSL #> $ choices #>   variable_choices with delayed data: ADSL #>   $ data #>   [1] \"ADSL\" #>   $ subset #>   NULL #>   $ key #>   NULL #> $ selected #>   variable_choices with delayed data: ADSL #>   $ data #>   [1] \"ADSL\" #>   $ subset #>   NULL #>   $ key #>   NULL #> $ multiple #> [1] TRUE #> $ fixed #> [1] FALSE #> $ always_selected #> NULL #> $ ordered #> [1] FALSE #> $ label #> [1] \"Select\" select_spec(choices = variable_choices(\"ADSL\"), selected = all_choices()) #> select_spec with delayed data: ADSL #> $ choices #>   variable_choices with delayed data: ADSL #>   $ data #>   [1] \"ADSL\" #>   $ subset #>   NULL #>   $ key #>   NULL #> $ selected #>   variable_choices with delayed data: ADSL #>   $ data #>   [1] \"ADSL\" #>   $ subset #>   NULL #>   $ key #>   NULL #> $ multiple #> [1] TRUE #> $ fixed #> [1] FALSE #> $ always_selected #> NULL #> $ ordered #> [1] FALSE #> $ label #> [1] \"Select\""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/split_by_sep.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Split by separator — split_by_sep","text":"","code":"split_by_sep(x, sep)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/split_by_sep.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Split by separator — split_by_sep","text":"x (character) Character (single) sep (character) Separator","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/teal.transform-package.html","id":null,"dir":"Reference","previous_headings":"","what":"teal.transform: Functions for extracting and merging data in the teal framework — teal.transform-package","title":"teal.transform: Functions for extracting and merging data in the teal framework — teal.transform-package","text":"standardized user interface column selection, facilitates dataset merging 'teal' framework.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/teal.transform-package.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"teal.transform: Functions for extracting and merging data in the teal framework — teal.transform-package","text":"Maintainer: Dawid Kaledkowski dawid.kaledkowski@roche.com Authors: Pawel Rucki pawel.rucki@roche.com Mahmoud Hallal mahmoud.hallal@roche.com Nikolas Burkoff Maciej Nasinski Konrad Pagacz Junlue Zhao contributors: F. Hoffmann-La Roche AG [copyright holder, funder]","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/validate_keys_sufficient.html","id":null,"dir":"Reference","previous_headings":"","what":"Validates whether the provided keys are sufficient to merge the datasets slices — validate_keys_sufficient","title":"Validates whether the provided keys are sufficient to merge the datasets slices — validate_keys_sufficient","text":"Validates whether provided keys sufficient merge datasets slices","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/validate_keys_sufficient.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Validates whether the provided keys are sufficient to merge the datasets slices — validate_keys_sufficient","text":"","code":"validate_keys_sufficient(join_keys, merged_selector_list)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/validate_keys_sufficient.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Validates whether the provided keys are sufficient to merge the datasets slices — validate_keys_sufficient","text":"join_keys (JoinKeys) provided join keys merged_selector_list (list) specification datasets' slices merge","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/validate_keys_sufficient.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Validates whether the provided keys are sufficient to merge the datasets slices — validate_keys_sufficient","text":"TRUE provided keys meet requirements; shiny validate error otherwise","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/validate_keys_sufficient.html","id":"note","dir":"Reference","previous_headings":"","what":"Note","title":"Validates whether the provided keys are sufficient to merge the datasets slices — validate_keys_sufficient","text":"keys sufficient datasets slices described merged_selector_list come datasets, appropriate join keys join_keys.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/value_choices.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapper on choices_labeled to label variable values basing on other variable values — value_choices","text":"","code":"value_choices(data, var_choices, var_label = NULL, subset = NULL, sep = \" - \")  # S3 method for character value_choices(data, var_choices, var_label = NULL, subset = NULL, sep = \" - \")  # S3 method for data.frame value_choices(data, var_choices, var_label = NULL, subset = NULL, sep = \" - \")  # S3 method for TealDataset value_choices(data, var_choices, var_label = NULL, subset = NULL, sep = \" - \")  # S3 method for TealDatasetConnector value_choices(data, var_choices, var_label = NULL, subset = NULL, sep = \" - \")"},{"path":"https://insightsengineering.github.io/teal.transform/reference/value_choices.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapper on choices_labeled to label variable values basing on other variable values — value_choices","text":"data (data.frame, character, TealDataset, TealDatasetConnector) data.frame, data extract labels character, name dataset extract data available TealDataset TealDatasetConnector, raw data extract labels . var_choices (character NULL) vector choices column names var_label (character) vector labels column names subset (character function) character, vector values subset. function, function used determine possible columns (e.g. factor columns). case, function must take single argument \"data\" return character vector. See examples details. sep (character) separator used case multiple column names","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/value_choices.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapper on choices_labeled to label variable values basing on other variable values — value_choices","text":"named character vector delayed_data object","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/value_choices.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Wrapper on choices_labeled to label variable values basing on other variable values — value_choices","text":"","code":"ADRS <- teal.transform::rADRS value_choices(ADRS, \"PARAMCD\", \"PARAM\", subset = c(\"BESRSPI\", \"INVET\")) #> number of choices: 2  #>  #> BESRSPI: Best Confirmed Overall Response by Investigator #> INVET: Investigator End Of Induction Response #>  value_choices(ADRS, c(\"PARAMCD\", \"ARMCD\"), c(\"PARAM\", \"ARM\")) #> number of choices: 9  #>  #> BESRSPI - ARM A: Best Confirmed Overall Response by Investigator - A: Drug X #> INVET - ARM A: Investigator End Of Induction Response - A: Drug X #> OVRINV - ARM A: Overall Response by Investigator - by visit - A: Drug X #> BESRSPI - ARM C: Best Confirmed Overall Response by Investigator - C: Combination #> INVET - ARM C: Investigator End Of Induction Response - C: Combination #> OVRINV - ARM C: Overall Response by Investigator - by visit - C: Combination #> BESRSPI - ARM B: Best Confirmed Overall Response by Investigator - B: Placebo #> INVET - ARM B: Investigator End Of Induction Response - B: Placebo #> OVRINV - ARM B: Overall Response by Investigator - by visit - B: Placebo #>  value_choices(ADRS, c(\"PARAMCD\", \"ARMCD\"), c(\"PARAM\", \"ARM\"),   subset = c(\"BESRSPI - ARM A\", \"INVET - ARM A\", \"OVRINV - ARM A\") ) #> number of choices: 3  #>  #> BESRSPI - ARM A: Best Confirmed Overall Response by Investigator - A: Drug X #> INVET - ARM A: Investigator End Of Induction Response - A: Drug X #> OVRINV - ARM A: Overall Response by Investigator - by visit - A: Drug X #>  value_choices(ADRS, c(\"PARAMCD\", \"ARMCD\"), c(\"PARAM\", \"ARM\"), sep = \" --- \") #> number of choices: 9  #>  #> BESRSPI --- ARM A: Best Confirmed Overall Response by Investigator --- A: Drug X #> INVET --- ARM A: Investigator End Of Induction Response --- A: Drug X #> OVRINV --- ARM A: Overall Response by Investigator - by visit --- A: Drug X #> BESRSPI --- ARM C: Best Confirmed Overall Response by Investigator --- C: Combination #> INVET --- ARM C: Investigator End Of Induction Response --- C: Combination #> OVRINV --- ARM C: Overall Response by Investigator - by visit --- C: Combination #> BESRSPI --- ARM B: Best Confirmed Overall Response by Investigator --- B: Placebo #> INVET --- ARM B: Investigator End Of Induction Response --- B: Placebo #> OVRINV --- ARM B: Overall Response by Investigator - by visit --- B: Placebo #>   # delayed version value_choices(\"ADRS\", c(\"PARAMCD\", \"ARMCD\"), c(\"PARAM\", \"ARM\")) #> value_choices with delayed data:  ADRS #> $ data #> [1] \"ADRS\" #> $ var_choices #> [1] \"PARAMCD\" \"ARMCD\"   #> $ var_label #> [1] \"PARAM\" \"ARM\"   #> $ subset #> NULL #> $ sep #> [1] \" - \"  # functional subset value_choices(ADRS, \"PARAMCD\", \"PARAM\", subset = function(data) {   return(levels(data$PARAMCD)[1:2]) }) #> number of choices: 2  #>  #> BESRSPI: Best Confirmed Overall Response by Investigator #> INVET: Investigator End Of Induction Response #>"},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/variable_choices.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapper on choices_labeled to label variables basing on existing labels in data — variable_choices","text":"","code":"variable_choices(data, subset = NULL, fill = FALSE, key = NULL)  # S3 method for character variable_choices(data, subset = NULL, fill = FALSE, key = NULL)  # S3 method for data.frame variable_choices(data, subset = NULL, fill = TRUE, key = NULL)  # S3 method for TealDataset variable_choices(   data,   subset = NULL,   fill = FALSE,   key = teal.data::get_keys(data) )  # S3 method for TealDatasetConnector variable_choices(   data,   subset = NULL,   fill = FALSE,   key = teal.data::get_keys(data) )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/variable_choices.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapper on choices_labeled to label variables basing on existing labels in data — variable_choices","text":"data (data.frame, character, TealDataset, TealDatasetConnector) data.frame, data extract labels character, name dataset extract data available TealDataset TealDatasetConnector, raw data extract labels . subset (character function) character, vector column names. function, function used determine possible columns (e.g. factor columns). case, function must take single argument \"data\" return character vector. See examples details. fill (logical(1)) TRUE, function return variable names columns non-existent labels; otherwise return NA key (character) vector names variables, part primary key data argument. optional argument, allows identify variables associated primary key display appropriate icon teal.widgets::optionalSelectInput() widget.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/variable_choices.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapper on choices_labeled to label variables basing on existing labels in data — variable_choices","text":"named character vector additional attributes delayed_data object","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/variable_choices.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Wrapper on choices_labeled to label variables basing on existing labels in data — variable_choices","text":"","code":"ADRS <- teal.transform::rADRS variable_choices(ADRS) #> number of choices: 65  #>  #> STUDYID: Study Identifier #> USUBJID: Unique Subject Identifier #> SUBJID: Subject Identifier for the Study #> SITEID: Study Site Identifier #> AGE: Age #> AGEU: Age Units #> SEX: Sex #> RACE: Race #> ETHNIC: Ethnicity #> COUNTRY: Country #> DTHFL: Subject Death Flag #> INVID: Investigator Identifier #> INVNAM: Investigator Name #> ARM: Description of Planned Arm #> ARMCD: Planned Arm Code #> ACTARM: Description of Actual Arm #> ACTARMCD: Actual Arm Code #> TRT01P: Planned Treatment for Period 01 #> TRT01A: Actual Treatment for Period 01 #> TRT02P: Planned Treatment for Period 02 #> TRT02A: Actual Treatment for Period 02 #> REGION1: Geographic Region 1 #> STRATA1: Stratification Factor 1 #> STRATA2: Stratification Factor 2 #> BMRKR1: Continuous Level Biomarker 1 #> BMRKR2: Categorical Level Biomarker 2 #> ITTFL: Intent-To-Treat Population Flag #> SAFFL: Safety Population Flag #> BMEASIFL: Response Evaluable Population Flag #> BEP01FL: Biomarker Evaluable Population Flag #> AEWITHFL: AE Leading to Drug Withdrawal Flag #> RANDDT: Date of Randomization #> TRTSDTM: Datetime of First Exposure to Treatment #> TRTEDTM: Datetime of Last Exposure to Treatment #> TRT01SDTM: Datetime of First Exposure to Treatment in Period 01 #> TRT01EDTM: Datetime of Last Exposure in Period 01 #> TRT02SDTM: Datetime of First Exposure to Treatment in Period 02 #> TRT02EDTM: Datetime of Last Exposure to Treatment in Period 02 #> AP01SDTM: Period 01 Start Datetime #> AP01EDTM: Period 01 End Datetime #> AP02SDTM: Period 02 Start Datetime #> AP02EDTM: Period 02 End Datetime #> EOSSTT: End of Study Status #> EOTSTT: End of Treatment Status #> EOSDT: End of Study Date #> EOSDY: End of Study Relative Day #> DCSREAS: Reason for Discontinuation from Study #> DTHDT: Date of Death #> DTHCAUS: Cause of Death #> DTHCAT: Cause of Death Category #> LDDTHELD: Elapsed Days from Last Dose to Death #> LDDTHGR1: Last Dose to Death - Days Elapsed Grp 1 #> LSTALVDT: Date Last Known Alive #> DTHADY: Relative Day of Death #> ADTHAUT: Autopsy Performed #> ASEQ: Analysis Sequence Number #> RSSEQ: Sequence Number #> PARAM: Parameter #> PARAMCD: Parameter Code #> AVAL: Analysis Value #> AVALC: Analysis Value (C) #> ADTM: Analysis Datetime #> ADY: Analysis Relative Day #> AVISIT: Analysis Visit #> AVISITN: Analysis Visit (N) #>  variable_choices(ADRS, subset = c(\"PARAM\", \"PARAMCD\")) #> number of choices: 2  #>  #> PARAM: Parameter #> PARAMCD: Parameter Code #>  variable_choices(ADRS, subset = c(\"\", \"PARAM\", \"PARAMCD\")) #> number of choices: 3  #>  #> :  #> PARAM: Parameter #> PARAMCD: Parameter Code #>  variable_choices(ADRS, subset = c(\"\", \"PARAM\", \"PARAMCD\"), key = teal.data::get_cdisc_keys(\"ADRS\")) #> number of choices: 3  #>  #> :  #> PARAM: Parameter #> PARAMCD: Parameter Code #>   # delayed version variable_choices(\"ADRS\", subset = c(\"USUBJID\", \"STUDYID\")) #> variable_choices with delayed data: ADRS #> $ data #> [1] \"ADRS\" #> $ subset #> [1] \"USUBJID\" \"STUDYID\" #> $ key #> NULL  # also works with [teal.data::TealDataset] and [teal.data::TealDatasetConnector] ADRS_dataset <- teal.data::dataset(\"ADRS\", ADRS, key = teal.data::get_cdisc_keys(\"ADRS\")) variable_choices(ADRS_dataset) #> number of choices: 65  #>  #> STUDYID: Study Identifier #> USUBJID: Unique Subject Identifier #> SUBJID: Subject Identifier for the Study #> SITEID: Study Site Identifier #> AGE: Age #> AGEU: Age Units #> SEX: Sex #> RACE: Race #> ETHNIC: Ethnicity #> COUNTRY: Country #> DTHFL: Subject Death Flag #> INVID: Investigator Identifier #> INVNAM: Investigator Name #> ARM: Description of Planned Arm #> ARMCD: Planned Arm Code #> ACTARM: Description of Actual Arm #> ACTARMCD: Actual Arm Code #> TRT01P: Planned Treatment for Period 01 #> TRT01A: Actual Treatment for Period 01 #> TRT02P: Planned Treatment for Period 02 #> TRT02A: Actual Treatment for Period 02 #> REGION1: Geographic Region 1 #> STRATA1: Stratification Factor 1 #> STRATA2: Stratification Factor 2 #> BMRKR1: Continuous Level Biomarker 1 #> BMRKR2: Categorical Level Biomarker 2 #> ITTFL: Intent-To-Treat Population Flag #> SAFFL: Safety Population Flag #> BMEASIFL: Response Evaluable Population Flag #> BEP01FL: Biomarker Evaluable Population Flag #> AEWITHFL: AE Leading to Drug Withdrawal Flag #> RANDDT: Date of Randomization #> TRTSDTM: Datetime of First Exposure to Treatment #> TRTEDTM: Datetime of Last Exposure to Treatment #> TRT01SDTM: Datetime of First Exposure to Treatment in Period 01 #> TRT01EDTM: Datetime of Last Exposure in Period 01 #> TRT02SDTM: Datetime of First Exposure to Treatment in Period 02 #> TRT02EDTM: Datetime of Last Exposure to Treatment in Period 02 #> AP01SDTM: Period 01 Start Datetime #> AP01EDTM: Period 01 End Datetime #> AP02SDTM: Period 02 Start Datetime #> AP02EDTM: Period 02 End Datetime #> EOSSTT: End of Study Status #> EOTSTT: End of Treatment Status #> EOSDT: End of Study Date #> EOSDY: End of Study Relative Day #> DCSREAS: Reason for Discontinuation from Study #> DTHDT: Date of Death #> DTHCAUS: Cause of Death #> DTHCAT: Cause of Death Category #> LDDTHELD: Elapsed Days from Last Dose to Death #> LDDTHGR1: Last Dose to Death - Days Elapsed Grp 1 #> LSTALVDT: Date Last Known Alive #> DTHADY: Relative Day of Death #> ADTHAUT: Autopsy Performed #> ASEQ: Analysis Sequence Number #> RSSEQ: Sequence Number #> PARAM: Parameter #> PARAMCD: Parameter Code #> AVAL: Analysis Value #> AVALC: Analysis Value (C) #> ADTM: Analysis Datetime #> ADY: Analysis Relative Day #> AVISIT: Analysis Visit #> AVISITN: Analysis Visit (N) #>   ADRS_conn <- teal.data::dataset_connector(   \"ADRS\",   pull_callable = teal.data::callable_code(\"radrs(cached = TRUE)\"),   key = teal.data::get_cdisc_keys(\"ADRS\") ) variable_choices(ADRS_conn) #> variable_choices with delayed data: ADRS #> $ data #> [1] \"ADRS\" #> $ subset #> NULL #> $ key #> [1] \"STUDYID\" \"USUBJID\" \"PARAMCD\" \"AVISIT\"   # functional subset (with delayed data) - return only factor variables variable_choices(\"ADRS\", subset = function(data) {   idx <- vapply(data, is.factor, logical(1))   return(names(data)[idx]) }) #> variable_choices with delayed data: ADRS #> $ data #> [1] \"ADRS\" #> $ subset #> function(data) { #>   idx <- vapply(data, is.factor, logical(1)) #>   return(names(data)[idx]) #> } #> <environment: 0x556c05392ad8> #> $ key #> NULL"},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/news/index.html","id":"miscellaneous-0-4-0-9003","dir":"Changelog","previous_headings":"","what":"Miscellaneous","title":"teal.transform 0.4.0.9003","text":"Specified minimal version package dependencies.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/news/index.html","id":"miscellaneous-0-4-0","dir":"Changelog","previous_headings":"","what":"Miscellaneous","title":"teal.transform 0.4.0","text":"Removed scda package dependency examples. Deprecated data_merge_module() data_merge_srv(). get_relabel_call function now returns call teal.data::col_relabel instead one formatters::var_relabel. Update installation instruction","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/news/index.html","id":"new-features-0-3-0","dir":"Changelog","previous_headings":"","what":"New Features","title":"teal.transform 0.3.0","text":"Added Queue class updated unit tests.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/news/index.html","id":"enhancements-0-3-0","dir":"Changelog","previous_headings":"","what":"Enhancements","title":"teal.transform 0.3.0","text":"Updated error messages choices_labeled(), variable_choices() value_choices() informative. Updated data_extract compatible shinyvalidate: data_extract_srv data_extract_multiple_srv accept shinyvalidate validation rules return objects now include shinyvalidate::InputValidator(s). Added helper function compose_and_enable_validators simplify enabling shinyvalidate::InputValidators returned data_extract_multiple_srv.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/news/index.html","id":"bug-fixes-0-3-0","dir":"Changelog","previous_headings":"","what":"Bug fixes","title":"teal.transform 0.3.0","text":"Fixed bug data_extract_filter_srv app developer sets selected value.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/news/index.html","id":"miscellaneous-0-3-0","dir":"Changelog","previous_headings":"","what":"Miscellaneous","title":"teal.transform 0.3.0","text":"Examples use scda.2022 instead scda.2021","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/news/index.html","id":"breaking-changes-0-2-0","dir":"Changelog","previous_headings":"","what":"Breaking changes","title":"teal.transform 0.2.0","text":"Updated data merge functionality longer expect input datanames suffix _FILTERED following changes output teal.slice::FilteredData$get_call(). Updated data merge downstream functions accept joinKeys object join_keys argument.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/news/index.html","id":"new-features-0-2-0","dir":"Changelog","previous_headings":"","what":"New features","title":"teal.transform 0.2.0","text":"data_extract_ui, data_extract_srv, data_extract_multiple_srv can initialized list (optionally reactive) data.frame objects. Added new modules merge_expression_srv merge_expression_module, updates data_merge_srv data_merge_module (deprecated future releases) respectively, datasets argument takes list (optionally reactive) data.frame objects new argument join_keys accepts joinKeys object.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/news/index.html","id":"enhancements-0-2-0","dir":"Changelog","previous_headings":"","what":"Enhancements","title":"teal.transform 0.2.0","text":"Updated examples tests use teal.slice::init_filtered_data initialize FilteredData object. Updated vignettes README content. Updated data_merge_module merge_expression_module accept NULL data_extract inputs.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/news/index.html","id":"new-features-0-1-1","dir":"Changelog","previous_headings":"","what":"New features","title":"teal.transform 0.1.1","text":"Added formatting function format_data_extract output data_extract_srv.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/news/index.html","id":"breaking-changes-0-1-1","dir":"Changelog","previous_headings":"","what":"Breaking changes","title":"teal.transform 0.1.1","text":"Removed (previously deprecated) input_id argument data_merge_module. Updated choices_selected selected values must valid choices. using delayed resolving invalid selected removed warning thrown logs, cases error thrown.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/news/index.html","id":"miscellaneous-0-1-1","dir":"Changelog","previous_headings":"","what":"Miscellaneous","title":"teal.transform 0.1.1","text":"Added template pkgdown site. Added names id parameter chunks$push calls. Updated package authors. Added vignettes extracting merging data.","code":""},{"path":[]},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/news/index.html","id":"new-features-0-1-0","dir":"Changelog","previous_headings":"Changes (from behavior when functionality was part of teal)","what":"New features","title":"teal.transform 0.1.0","text":"Added new argument ordered select_spec() flag whether order selection tracked.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/news/index.html","id":"miscellaneous-0-1-0","dir":"Changelog","previous_headings":"Changes (from behavior when functionality was part of teal)","what":"Miscellaneous","title":"teal.transform 0.1.0","text":"get_relabel_call function now returns formatters::var_relabel instead teal.data::var_relabel.","code":""}]
+[{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/CODE_OF_CONDUCT.html","id":"our-pledge","dir":"","previous_headings":"","what":"Our Pledge","title":"Contributor Covenant Code of Conduct","text":"members, contributors, leaders pledge make participation community harassment-free experience everyone, regardless age, body size, visible invisible disability, ethnicity, sex characteristics, gender identity expression, level experience, education, socio-economic status, nationality, personal appearance, race, caste, color, religion, sexual identity orientation. pledge act interact ways contribute open, welcoming, diverse, inclusive, healthy community.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CODE_OF_CONDUCT.html","id":"our-standards","dir":"","previous_headings":"","what":"Our Standards","title":"Contributor Covenant Code of Conduct","text":"Examples behavior contributes positive environment community include: Demonstrating empathy kindness toward people respectful differing opinions, viewpoints, experiences Giving gracefully accepting constructive feedback Accepting responsibility apologizing affected mistakes, learning experience Focusing best just us individuals, overall community Examples unacceptable behavior include: use sexualized language imagery, sexual attention advances kind Trolling, insulting derogatory comments, personal political attacks Public private harassment Publishing others’ private information, physical email address, without explicit permission conduct reasonably considered inappropriate professional setting","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CODE_OF_CONDUCT.html","id":"enforcement-responsibilities","dir":"","previous_headings":"","what":"Enforcement Responsibilities","title":"Contributor Covenant Code of Conduct","text":"Community leaders responsible clarifying enforcing standards acceptable behavior take appropriate fair corrective action response behavior deem inappropriate, threatening, offensive, harmful. Community leaders right responsibility remove, edit, reject comments, commits, code, wiki edits, issues, contributions aligned Code Conduct, communicate reasons moderation decisions appropriate.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CODE_OF_CONDUCT.html","id":"scope","dir":"","previous_headings":"","what":"Scope","title":"Contributor Covenant Code of Conduct","text":"Code Conduct applies within community spaces, also applies individual officially representing community public spaces. Examples representing community include using official e-mail address, posting via official social media account, acting appointed representative online offline event.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CODE_OF_CONDUCT.html","id":"enforcement","dir":"","previous_headings":"","what":"Enforcement","title":"Contributor Covenant Code of Conduct","text":"Instances abusive, harassing, otherwise unacceptable behavior may reported community leaders responsible enforcement [INSERT CONTACT METHOD]. complaints reviewed investigated promptly fairly. community leaders obligated respect privacy security reporter incident.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CODE_OF_CONDUCT.html","id":"enforcement-guidelines","dir":"","previous_headings":"","what":"Enforcement Guidelines","title":"Contributor Covenant Code of Conduct","text":"Community leaders follow Community Impact Guidelines determining consequences action deem violation Code Conduct:","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CODE_OF_CONDUCT.html","id":"id_1-correction","dir":"","previous_headings":"Enforcement Guidelines","what":"1. Correction","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Use inappropriate language behavior deemed unprofessional unwelcome community. Consequence: private, written warning community leaders, providing clarity around nature violation explanation behavior inappropriate. public apology may requested.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CODE_OF_CONDUCT.html","id":"id_2-warning","dir":"","previous_headings":"Enforcement Guidelines","what":"2. Warning","title":"Contributor Covenant Code of Conduct","text":"Community Impact: violation single incident series actions. Consequence: warning consequences continued behavior. interaction people involved, including unsolicited interaction enforcing Code Conduct, specified period time. includes avoiding interactions community spaces well external channels like social media. Violating terms may lead temporary permanent ban.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CODE_OF_CONDUCT.html","id":"id_3-temporary-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"3. Temporary Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: serious violation community standards, including sustained inappropriate behavior. Consequence: temporary ban sort interaction public communication community specified period time. public private interaction people involved, including unsolicited interaction enforcing Code Conduct, allowed period. Violating terms may lead permanent ban.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CODE_OF_CONDUCT.html","id":"id_4-permanent-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"4. Permanent Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Demonstrating pattern violation community standards, including sustained inappropriate behavior, harassment individual, aggression toward disparagement classes individuals. Consequence: permanent ban sort public interaction within community.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CODE_OF_CONDUCT.html","id":"attribution","dir":"","previous_headings":"","what":"Attribution","title":"Contributor Covenant Code of Conduct","text":"Code Conduct adapted Contributor Covenant, version 2.1, available https://www.contributor-covenant.org/version/2/1/code_of_conduct.html. Community Impact Guidelines inspired Mozilla’s code conduct enforcement ladder. answers common questions code conduct, see FAQ https://www.contributor-covenant.org/faq. Translations available https://www.contributor-covenant.org/translations.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":null,"dir":"","previous_headings":"","what":"Contribution Guidelines","title":"Contribution Guidelines","text":"🙏 Thank taking time contribute! input deeply valued, whether issue, pull request, even feedback, regardless size, content scope.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"table-of-contents","dir":"","previous_headings":"","what":"Table of contents","title":"Contribution Guidelines","text":"👶 Getting started 📔 Code Conduct 🗃 License 📜 Issues 🚩 Pull requests 💻 Coding guidelines 🏆 Recognition model ❓ Questions","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"getting-started","dir":"","previous_headings":"","what":"Getting started","title":"Contribution Guidelines","text":"Please refer project documentation brief introduction. Please also see articles within project documentation additional information.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"code-of-conduct","dir":"","previous_headings":"","what":"Code of Conduct","title":"Contribution Guidelines","text":"Code Conduct governs project. Participants contributors expected follow rules outlined therein.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"license","dir":"","previous_headings":"","what":"License","title":"Contribution Guidelines","text":"contributions covered project’s license.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"issues","dir":"","previous_headings":"","what":"Issues","title":"Contribution Guidelines","text":"use GitHub track issues, feature requests, bugs. submitting new issue, please check issue already reported. issue already exists, please upvote existing issue 👍. new feature requests, please elaborate context benefit feature users, developers, relevant personas.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"github-flow","dir":"","previous_headings":"Pull requests","what":"GitHub Flow","title":"Contribution Guidelines","text":"repository uses GitHub Flow model collaboration. submit pull request: Create branch Please see branch naming convention . don’t write access repository, please fork . Make changes Make sure code passes checks imposed GitHub Actions well documented well tested unit tests sufficiently covering changes introduced Create pull request (PR) pull request description, please link relevant issue (), provide detailed description change, include assumptions. Address review comments, Post approval Merge PR write access. Otherwise, reviewer merge PR behalf. Pat back Congratulations! 🎉 now official contributor project! grateful contribution.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"branch-naming-convention","dir":"","previous_headings":"Pull requests","what":"Branch naming convention","title":"Contribution Guidelines","text":"Suppose changes related current issue current project; please name branch follows: <issue_id>_<short_description>. Please use underscore (_) delimiter word separation. example, 420_fix_ui_bug suitable branch name change resolving UI-related bug reported issue number 420 current project. change affects multiple repositories, please name branches follows: <issue_id>_<issue_repo>_<short description>. example, 69_awesomeproject_fix_spelling_error reference issue 69 reported project awesomeproject aims resolve one spelling errors multiple (likely related) repositories.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"monorepo-and-stageddependencies","dir":"","previous_headings":"Pull requests","what":"monorepo and staged.dependencies","title":"Contribution Guidelines","text":"Sometimes might need change upstream dependent package(s) able submit meaningful change. using staged.dependencies functionality simulate monorepo behavior. dependency configuration already specified project’s staged_dependencies.yaml file. need name feature branches appropriately. exception branch naming convention described . Please refer staged.dependencies package documentation details.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"coding-guidelines","dir":"","previous_headings":"","what":"Coding guidelines","title":"Contribution Guidelines","text":"repository follows unified processes standards adopted maintainers ensure software development carried consistently within teams cohesively across repositories.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"style-guide","dir":"","previous_headings":"Coding guidelines","what":"Style guide","title":"Contribution Guidelines","text":"repository follows standard tidyverse style guide uses lintr lint checks. Customized lint configurations available repository’s .lintr file.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"dependency-management","dir":"","previous_headings":"Coding guidelines","what":"Dependency management","title":"Contribution Guidelines","text":"Lightweight right weight. repository follows tinyverse recommedations limiting dependencies minimum.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"dependency-version-management","dir":"","previous_headings":"Coding guidelines","what":"Dependency version management","title":"Contribution Guidelines","text":"code compatible (!) historical versions given dependenct package, required specify minimal version DESCRIPTION file. particular: development version requires (imports) development version another package - required put abc (>= 1.2.3.9000).","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"r--package-versions","dir":"","previous_headings":"Coding guidelines > Recommended development environment & tools","what":"R & package versions","title":"Contribution Guidelines","text":"continuously test packages newest R version along recent dependencies CRAN BioConductor. recommend working environment also set way. can find details R version packages used R CMD check GitHub Action execution log - step prints R sessionInfo(). discover bugs older R versions older set dependencies, please create relevant bug reports.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"pre-commit","dir":"","previous_headings":"Coding guidelines > Recommended development environment & tools","what":"pre-commit","title":"Contribution Guidelines","text":"highly recommend use pre-commit tool combined R hooks pre-commit execute checks committing pushing changes. Pre-commit hooks already available repository’s .pre-commit-config.yaml file.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"recognition-model","dir":"","previous_headings":"","what":"Recognition model","title":"Contribution Guidelines","text":"mentioned previously, contributions deeply valued appreciated. contribution data available part repository insights, recognize significant contribution hence add contributor package authors list, following rules enforced: Minimum 5% lines code authored* (determined git blame query) top 5 contributors terms number commits lines added lines removed* *Excluding auto-generated code, including limited roxygen comments renv.lock files. package maintainer also reserves right adjust criteria recognize contributions.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/CONTRIBUTING.html","id":"questions","dir":"","previous_headings":"","what":"Questions","title":"Contribution Guidelines","text":"questions regarding contribution guidelines, please contact package/repository maintainer.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/SECURITY.html","id":"reporting-security-issues","dir":"","previous_headings":"","what":"Reporting Security Issues","title":"Security Policy","text":"believe found security vulnerability repositories organization, please report us coordinated disclosure. Please report security vulnerabilities public GitHub issues, discussions, pull requests. Instead, please send email vulnerability.management[@]roche.com. Please include much information listed can help us better understand resolve issue: type issue (e.g., buffer overflow, SQL injection, cross-site scripting) Full paths source file(s) related manifestation issue location affected source code (tag/branch/commit direct URL) special configuration required reproduce issue Step--step instructions reproduce issue Proof--concept exploit code (possible) Impact issue, including attacker might exploit issue information help us triage report quickly.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/SECURITY.html","id":"data-security-standards-dss","dir":"","previous_headings":"","what":"Data Security Standards (DSS)","title":"Security Policy","text":"Please make sure reporting issues form bug, feature, pull request, sensitive information PII, PHI, PCI completely removed text attachments, including pictures videos.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/articles/data-extract-merge.html","id":"example-module","dir":"Articles","previous_headings":"","what":"Example module","title":"Combining Data Extract with Data Merge","text":", create merge_ui merge_srv functions used create ui srv components shiny app, respectively. Output data_extract_srv (reactive) passed merge_expression_srv together datasets (list data.frame objects) join_keys list. merge_expression_srv returns reactive list containing merge expression information needed perform transformation - see merge_expression_srv documentation.","code":"merge_ui <- function(id, data_extracts) {   ns <- NS(id)   teal.widgets::standard_layout(     output = teal.widgets::white_small_well(       verbatimTextOutput(ns(\"expr\")),       dataTableOutput(ns(\"data\"))     ),     encoding = div(       teal.transform::data_extract_ui(         ns(\"adsl_extract\"), # must correspond with data_extracts list names         label = \"ADSL extract\",         data_extracts[[1]]       ),       teal.transform::data_extract_ui(         ns(\"adtte_extract\"), # must correspond with data_extracts list names         label = \"ADTTE extract\",         data_extracts[[2]]       )     )   ) }  merge_srv <- function(id, datasets, data_extracts, join_keys) {   moduleServer(id, function(input, output, session) {     selector_list <- teal.transform::data_extract_multiple_srv(data_extracts, datasets, join_keys)     merged_data <- teal.transform::merge_expression_srv(       selector_list = selector_list,       datasets = datasets,       join_keys = join_keys,       merge_function = \"dplyr::left_join\"     )     ANL <- reactive({ # nolint       eval(envir = list2env(datasets), expr = as.expression(merged_data()$expr))     })     output$expr <- renderText(paste(merged_data()$expr, collapse = \"\\n\"))     output$data <- renderDataTable(ANL())   }) }"},{"path":"https://insightsengineering.github.io/teal.transform/articles/data-extract-merge.html","id":"example-data","dir":"Articles","previous_headings":"","what":"Example data","title":"Combining Data Extract with Data Merge","text":"data_extract_srv module depends either list reactive non-reactive data.frame objects. , show usage list data.frame objects input datasets list necessary join keys per data.frame object required:","code":"# Define data.frame objects ADSL <- teal.transform::rADSL # nolint ADTTE <- teal.transform::rADTTE # nolint  # create a list of data.frame objects datasets <- list(ADSL = ADSL, ADTTE = ADTTE)  # create join_keys join_keys <- teal.data::join_keys(   teal.data::join_key(\"ADSL\", \"ADSL\", c(\"STUDYID\", \"USUBJID\")),   teal.data::join_key(\"ADSL\", \"ADTTE\", c(\"STUDYID\", \"USUBJID\")),   teal.data::join_key(\"ADTTE\", \"ADTTE\", c(\"STUDYID\", \"USUBJID\", \"PARAMCD\")) )"},{"path":"https://insightsengineering.github.io/teal.transform/articles/data-extract-merge.html","id":"shiny-app","dir":"Articles","previous_headings":"","what":"Shiny app","title":"Combining Data Extract with Data Merge","text":"Finally, pass merge_ui merge_srv ui server functions shinyApp using data_extracts defined first code block datasets object:","code":"shinyApp(   ui = fluidPage(merge_ui(\"data_merge\", data_extracts)),   server = function(input, output, session) {     merge_srv(\"data_merge\", datasets, data_extracts, join_keys)   } )"},{"path":"https://insightsengineering.github.io/teal.transform/articles/data-extract.html","id":"data_extract_spec","dir":"Articles","previous_headings":"","what":"data_extract_spec","title":"Data Extract","text":"data_extract_spec’s task two-fold: create UI component shiny application pass user input UI module . formulated, let’s look supports responsibilities.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/articles/data-extract.html","id":"example-module","dir":"Articles","previous_headings":"data_extract_spec","what":"Example module","title":"Data Extract","text":"order showcase different initialization options data_extract_spec, first define shiny module uses data_extract_ui data_extract_srv designed handle data_extract_spec objects. module creates UI component single data_extract_spec prints list values returned data_extract_srv module. Please see package documentation information data_extract_ui data_extract_srv.","code":"library(teal.transform) #> Loading required package: magrittr library(shiny)  extract_ui <- function(id, data_extract) {   ns <- NS(id)   teal.widgets::standard_layout(     output = teal.widgets::white_small_well(verbatimTextOutput(ns(\"output\"))),     encoding = data_extract_ui(ns(\"data_extract\"), label = \"variable\", data_extract)   ) }  extract_srv <- function(id, datasets, data_extract, join_keys) {   moduleServer(id, function(input, output, session) {     reactive_extract_input <- data_extract_srv(\"data_extract\", datasets, data_extract, join_keys)     s <- reactive({       format_data_extract(reactive_extract_input())     })     output$output <- renderPrint({       cat(s())     })   }) }"},{"path":"https://insightsengineering.github.io/teal.transform/articles/data-extract.html","id":"example-data","dir":"Articles","previous_headings":"data_extract_spec","what":"Example data","title":"Data Extract","text":"data_extract_srv module depends either list reactive non-reactive data.frame objects. , show usage list data.frame objects input datasets list necessary join keys per data.frame object required: Consider following example, create two UI elements, one filter specific level SEX variable, second one select variable c(\"BMRKR1\", \"AGE\"). data_extract_spec object handed shiny app gives instructions generate UI components.","code":"# Define data.frame objects ADSL <- teal.transform::rADSL # nolint ADTTE <- teal.transform::rADTTE # nolint  # create a list of data.frame objects datasets <- list(ADSL = ADSL, ADTTE = ADTTE)  # create join_keys join_keys <- teal.data::join_keys(   teal.data::join_key(\"ADSL\", \"ADSL\", c(\"STUDYID\", \"USUBJID\")),   teal.data::join_key(\"ADSL\", \"ADTTE\", c(\"STUDYID\", \"USUBJID\")),   teal.data::join_key(\"ADTTE\", \"ADTTE\", c(\"STUDYID\", \"USUBJID\", \"PARAMCD\")) ) simple_des <- data_extract_spec(   dataname = \"ADSL\",   filter = filter_spec(vars = \"SEX\", choices = c(\"F\", \"M\")),   select = select_spec(choices = c(\"BMRKR1\", \"AGE\")) )"},{"path":"https://insightsengineering.github.io/teal.transform/articles/data-extract.html","id":"shiny-app","dir":"Articles","previous_headings":"data_extract_spec","what":"Shiny app","title":"Data Extract","text":"Finally, pass extract_ui ui shinyApp use extract_srv server function shinyApp:","code":"shinyApp(   ui = fluidPage(extract_ui(\"data_extract\", simple_des)),   server = function(input, output, session) {     extract_srv(\"data_extract\", datasets, simple_des, join_keys)   } )"},{"path":"https://insightsengineering.github.io/teal.transform/articles/data-merge.html","id":"merge_expression_module","dir":"Articles","previous_headings":"","what":"merge_expression_module","title":"Data Merge","text":"merge_expression_module solely, need list data_extract_spec objects data_extract argument, list reactive non-reactive data.frame objects list join keys corresponding every data.frame object.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/articles/data-merge.html","id":"app-code","dir":"Articles","previous_headings":"merge_expression_module","what":"App code","title":"Data Merge","text":"","code":"library(teal.transform) #> Loading required package: magrittr library(shiny)  adsl_extract <- teal.transform::data_extract_spec(   dataname = \"ADSL\",   select = select_spec(     label = \"Select variable:\",     choices = c(\"AGE\", \"BMRKR1\"),     selected = \"AGE\",     multiple = TRUE,     fixed = FALSE   ) )  adtte_extract <- teal.transform::data_extract_spec(   dataname = \"ADTTE\",   select = select_spec(     choices = c(\"AVAL\", \"ASEQ\"),     selected = \"AVAL\",     multiple = TRUE,     fixed = FALSE   ) )  data_extracts <- list(adsl_extract = adsl_extract, adtte_extract = adtte_extract)  merge_ui <- function(id, data_extracts) {   ns <- NS(id)   teal.widgets::standard_layout(     output = teal.widgets::white_small_well(       verbatimTextOutput(ns(\"expr\")),       dataTableOutput(ns(\"data\"))     ),     encoding = div(       teal.transform::data_extract_ui(         ns(\"adsl_extract\"), # must correspond with data_extracts list names         label = \"ADSL extract\",         data_extracts[[1]]       ),       teal.transform::data_extract_ui(         ns(\"adtte_extract\"), # must correspond with data_extracts list names         label = \"ADTTE extract\",         data_extracts[[2]]       )     )   ) }  merge_module <- function(id, datasets, data_extracts, join_keys) {   moduleServer(id, function(input, output, session) {     merged_data <- teal.transform::merge_expression_module(       data_extract = data_extracts,       datasets = datasets,       join_keys = join_keys,       merge_function = \"dplyr::left_join\"     )      ANL <- reactive({ # nolint       eval(envir = list2env(datasets), expr = as.expression(merged_data()$expr))     })     output$expr <- renderText(paste(merged_data()$expr, collapse = \"\\n\"))     output$data <- renderDataTable(ANL())   }) }  # Define data.frame objects ADSL <- teal.transform::rADSL # nolint ADTTE <- teal.transform::rADTTE # nolint  # create a list of data.frame objects datasets <- list(ADSL = ADSL, ADTTE = ADTTE)  # create  join_keys join_keys <- teal.data::join_keys(   teal.data::join_key(\"ADSL\", \"ADSL\", c(\"STUDYID\", \"USUBJID\")),   teal.data::join_key(\"ADSL\", \"ADTTE\", c(\"STUDYID\", \"USUBJID\")),   teal.data::join_key(\"ADTTE\", \"ADTTE\", c(\"STUDYID\", \"USUBJID\", \"PARAMCD\")) )"},{"path":"https://insightsengineering.github.io/teal.transform/articles/data-merge.html","id":"shiny-app","dir":"Articles","previous_headings":"merge_expression_module","what":"Shiny app","title":"Data Merge","text":"","code":"shinyApp(   ui = fluidPage(merge_ui(\"data_merge\", data_extracts)),   server = function(input, output, session) {     merge_module(\"data_merge\", datasets, data_extracts, join_keys)   } )"},{"path":"https://insightsengineering.github.io/teal.transform/articles/data-merge.html","id":"data_extract_multiple_srv-merge_expression_srv","dir":"Articles","previous_headings":"","what":"data_extract_multiple_srv + merge_expression_srv","title":"Data Merge","text":"scenario , user deselects ADTTE variable, merging ADTTE ADSL still take place even though ADTTE used needed . , developer might update selector_list input reactive manner gets updated based conditions set developer. , reuse input update app server adtte_extract removed selector_list input ADTTE variable selected reactive_selector_list passed merge_expression_srv:","code":"merge_module <- function(id, datasets, data_extracts, join_keys) {   moduleServer(id, function(input, output, session) {     selector_list <- teal.transform::data_extract_multiple_srv(data_extracts, datasets, join_keys)     reactive_selector_list <- reactive({       if (is.null(selector_list()$adtte_extract) || length(selector_list()$adtte_extract()$select) == 0) {         selector_list()[names(selector_list()) != \"adtte_extract\"]       } else {         selector_list()       }     })      merged_data <- teal.transform::merge_expression_srv(       selector_list = reactive_selector_list,       datasets = datasets,       join_keys = join_keys,       merge_function = \"dplyr::left_join\"     )      ANL <- reactive({ # nolint       eval(envir = list2env(datasets), expr = as.expression(merged_data()$expr))     })     output$expr <- renderText(paste(merged_data()$expr, collapse = \"\\n\"))     output$data <- renderDataTable(ANL())   }) }"},{"path":"https://insightsengineering.github.io/teal.transform/articles/data-merge.html","id":"shiny-app-1","dir":"Articles","previous_headings":"data_extract_multiple_srv + merge_expression_srv","what":"Shiny app","title":"Data Merge","text":"merge_expression_module replaced three parts: selector_list: output data_extract_multiple_srv loops list data_extract given runs data_extract_srv one returning list reactive objects. reactive_selector_list: intermediate reactive list updating selector_list content merged_data: output merge_expression_srv using reactive_selector_list input","code":"shinyApp(   ui = fluidPage(merge_ui(\"data_merge\", data_extracts)),   server = function(input, output, session) {     merge_module(\"data_merge\", datasets, data_extracts, join_keys)   } )"},{"path":"https://insightsengineering.github.io/teal.transform/articles/data-merge.html","id":"output-from-merging","dir":"Articles","previous_headings":"","what":"Output from merging","title":"Data Merge","text":"merge functions, merge_expression_srv merge_expression_module, return reactive object contains list following elements: expr: code needed replicate merged dataset columns_source: list columns selected per selector keys: keys merged dataset filter_info: filters applied data elements can used inside server retrieve use information selections, data, filters, …","code":""},{"path":"https://insightsengineering.github.io/teal.transform/articles/data-merge.html","id":"merging-of-non-cdisc-datasets","dir":"Articles","previous_headings":"","what":"Merging of non CDISC datasets","title":"Data Merge","text":"General datasets share relationships CDISC datasets thus relationships must specified join_keys functions. information, please refer Join Keys vignette. data merge module respects relationships given user case multiple datasets merge, order specified order elements data_extract argument merge_expression_module function. Merging groups datasets complex relationships can quickly become challenging specify please take extra care setting .","code":""},{"path":"https://insightsengineering.github.io/teal.transform/articles/teal-transform.html","id":"introduction","dir":"Articles","previous_headings":"","what":"Introduction","title":"Getting Started with teal.transform","text":"teal.transform package integral component teal framework. serves dual purpose: teal module developers, offers standardized user interface column selection datasets facilitates dataset merging, resulting creation analysis datasets use within modules. teal application developers, provides means specify dataset columns can accessed user interface, streamlining column selection within applications.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/articles/teal-transform.html","id":"data-extraction-and-data-merging","dir":"Articles","previous_headings":"","what":"Data Extraction and Data Merging","title":"Getting Started with teal.transform","text":"delve process selecting specific data columns, please consult Data Extraction vignette. comprehensive information regarding data merging, please refer Data Merge vignette. explore combined use data extraction merging, please explore Combining data-extract data-merge vignette.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Dawid Kaledkowski. Author, maintainer. Pawel Rucki. Author. Mahmoud Hallal. Author. Nikolas Burkoff. Author. Maciej Nasinski. Author. Konrad Pagacz. Author. Junlue Zhao. Author. F. Hoffmann-La Roche AG. Copyright holder, funder.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Kaledkowski D, Rucki P, Hallal M, Burkoff N, Nasinski M, Pagacz K, Zhao J (2023). teal.transform: Functions Extracting Merging Data 'teal' Framework. R package version 0.4.0.9006,  https://github.com/insightsengineering/teal.transform/, https://insightsengineering.github.io/teal.transform/.","code":"@Manual{,   title = {teal.transform: Functions for Extracting and Merging Data in the 'teal' Framework},   author = {Dawid Kaledkowski and Pawel Rucki and Mahmoud Hallal and Nikolas Burkoff and Maciej Nasinski and Konrad Pagacz and Junlue Zhao},   year = {2023},   note = {R package version 0.4.0.9006,  https://github.com/insightsengineering/teal.transform/},   url = {https://insightsengineering.github.io/teal.transform/}, }"},{"path":"https://insightsengineering.github.io/teal.transform/index.html","id":"tealtransform","dir":"","previous_headings":"","what":"Functions for Extracting and Merging Data in the teal Framework","title":"Functions for Extracting and Merging Data in the teal Framework","text":"package contains functions shiny modules extracting merging data within teal framework.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/index.html","id":"installation","dir":"","previous_headings":"","what":"Installation","title":"Functions for Extracting and Merging Data in the teal Framework","text":"Alternatively, might want use development version available r-universe.","code":"# stable versions install.packages('teal.transform', repos = c('https://insightsengineering.r-universe.dev', getOption('repos')))  # install.packages(\"pak\") pak::pak(\"insightsengineering/teal.transform@*release\") # beta versions install.packages('teal.transform', repos = c('https://pharmaverse.r-universe.dev', getOption('repos')))  # install.packages(\"pak\") pak::pak(\"insightsengineering/teal.transform\")"},{"path":"https://insightsengineering.github.io/teal.transform/index.html","id":"usage","dir":"","previous_headings":"","what":"Usage","title":"Functions for Extracting and Merging Data in the teal Framework","text":"understand use package, please refer Getting Started article, provides multiple examples code implementation. small example usage:","code":"library(teal.transform) ADSL <- teal.transform::rADSL  adsl_extract <- data_extract_spec(   dataname = \"ADSL\",   filter = filter_spec(vars = \"SEX\", choices = c(\"F\", \"M\")),   select = select_spec(choices = c(\"BMRKR1\", \"AGE\")) )  ui <- data_extract_ui(   id = \"adsl_ui\",   label = \"ADSL UI\",   data_extract_spec = adsl_extract )  library(shiny) ui <- fluidPage(ui) server <- function(input, output, session) {} shinyApp(ui, server)"},{"path":"https://insightsengineering.github.io/teal.transform/index.html","id":"getting-help","dir":"","previous_headings":"","what":"Getting help","title":"Functions for Extracting and Merging Data in the teal Framework","text":"encounter bug feature request - please file issue. questions, discussions staying date, please use “teal” channel pharmaverse slack workspace.","code":""},{"path":[]},{"path":[]},{"path":[]},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/pull_request_template.html","id":null,"dir":"","previous_headings":"","what":"Pull Request","title":"Pull Request","text":"Fixes #nnn","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":null,"dir":"Reference","previous_headings":"","what":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"Abstract data type stores returns number elements. Queue object stores elements single vector, thus data types can stored, silent coercion may occur. Elements returned order added.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"public-methods","dir":"Reference","previous_headings":"","what":"Public methods","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"Queue$push() Queue$get() Queue$pop() Queue$remove() Queue$empty() Queue$size() Queue$print() Queue$clone()","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"method-push-","dir":"Reference","previous_headings":"","what":"Method push()","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"Adds element(s) Queue.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"usage","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"","code":"Queue$push(new_elements)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"new_elements vector elements add","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"returns","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"self invisibly","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"method-get-","dir":"Reference","previous_headings":"","what":"Method get()","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"Returns contents Queue object.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"usage-1","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"","code":"Queue$get()"},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"returns-1","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"single vector containing Queue contents","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"method-pop-","dir":"Reference","previous_headings":"","what":"Method pop()","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"Returns first (oldest) element Queue removes .","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"usage-2","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"","code":"Queue$pop()"},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"returns-2","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"vector length 1 containing first element Queue NULL Queue empty","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"method-remove-","dir":"Reference","previous_headings":"","what":"Method remove()","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"Removes oldest occurrence specified element(s) Queue. Relies implicit type conversions R identify elements remove.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"usage-3","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"","code":"Queue$remove(elements)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"arguments-1","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"elements vector elements remove Queue","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"returns-3","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"self invisibly","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"method-empty-","dir":"Reference","previous_headings":"","what":"Method empty()","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"Removes elements Queue.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"usage-4","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"","code":"Queue$empty()"},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"returns-4","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"self invisibly","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"method-size-","dir":"Reference","previous_headings":"","what":"Method size()","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"Returns number elements Queue.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"usage-5","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"","code":"Queue$size()"},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"returns-5","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"integer length 1","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"method-print-","dir":"Reference","previous_headings":"","what":"Method print()","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"Prints Queue.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"usage-6","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"","code":"Queue$print(...)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"arguments-2","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"... additional arguments method, ignored","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"returns-6","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"invisibly self","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"method-clone-","dir":"Reference","previous_headings":"","what":"Method clone()","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"objects class cloneable method.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"usage-7","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"","code":"Queue$clone(deep = FALSE)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/Queue.html","id":"arguments-3","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 Class - A First-In-First-Out Abstract Data Type — Queue","text":"deep Whether make deep clone.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/add_no_selected_choices.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Add empty choice to choices selected — add_no_selected_choices","text":"","code":"add_no_selected_choices(x, multiple = FALSE)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/add_no_selected_choices.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Add empty choice to choices selected — add_no_selected_choices","text":"x (choices_selected) output multiple (logical) whether multiple selections allowed ","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/all_choices.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"An S3 structure representing the selection of all\npossible choices in a filter_spec, select_spec or choices_selected object. — all_choices","text":"","code":"all_choices()"},{"path":"https://insightsengineering.github.io/teal.transform/reference/all_choices.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"An S3 structure representing the selection of all\npossible choices in a filter_spec, select_spec or choices_selected object. — all_choices","text":"all_choices object","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/all_choices.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"An S3 structure representing the selection of all\npossible choices in a filter_spec, select_spec or choices_selected object. — all_choices","text":"","code":"# Both structures are semantically identical filter_spec(   vars = c(\"selected_variable\"),   choices = c(\"value1\", \"value2\"),   selected = c(\"value1\", \"value2\") ) #> filter_spec with delayed data: #> $ vars_choices #> [1] \"selected_variable\" #> $ vars_selected #> [1] \"selected_variable\" #> $ vars_label #> NULL #> $ vars_fixed #> [1] TRUE #> $ vars_multiple #> [1] TRUE #> $ choices #> [1] \"value1\" \"value2\" #> $ selected #> [1] \"value1\" \"value2\" #> $ label #> [1] \"Filter by\" #> $ multiple #> [1] TRUE #> $ fixed #> [1] FALSE #> $ sep #> [1] \" - \" #> $ drop_keys #> [1] FALSE #> $ dataname #> NULL #> $ initialized #> [1] FALSE  filter_spec(   vars = c(\"selected_variable\"),   choices = c(\"value1\", \"value2\"),   selected = all_choices() ) #> filter_spec with delayed data: #> $ vars_choices #> [1] \"selected_variable\" #> $ vars_selected #> [1] \"selected_variable\" #> $ vars_label #> NULL #> $ vars_fixed #> [1] TRUE #> $ vars_multiple #> [1] TRUE #> $ choices #> [1] \"value1\" \"value2\" #> $ selected #> [1] \"value1\" \"value2\" #> $ label #> [1] \"Filter by\" #> $ multiple #> [1] TRUE #> $ fixed #> [1] FALSE #> $ sep #> [1] \" - \" #> $ drop_keys #> [1] FALSE #> $ dataname #> NULL #> $ initialized #> [1] FALSE  choices_selected(choices = letters, selected = letters) #> $choices #>  [1] \"a\" \"b\" \"c\" \"d\" \"e\" \"f\" \"g\" \"h\" \"i\" \"j\" \"k\" \"l\" \"m\" \"n\" \"o\" \"p\" \"q\" \"r\" \"s\" #> [20] \"t\" \"u\" \"v\" \"w\" \"x\" \"y\" \"z\" #>  #> $selected #>  [1] \"a\" \"b\" \"c\" \"d\" \"e\" \"f\" \"g\" \"h\" \"i\" \"j\" \"k\" \"l\" \"m\" \"n\" \"o\" \"p\" \"q\" \"r\" \"s\" #> [20] \"t\" \"u\" \"v\" \"w\" \"x\" \"y\" \"z\" #>  #> $fixed #> [1] FALSE #>  #> attr(,\"class\") #> [1] \"choices_selected\" choices_selected(choices = letters, selected = all_choices()) #> $choices #>  [1] \"a\" \"b\" \"c\" \"d\" \"e\" \"f\" \"g\" \"h\" \"i\" \"j\" \"k\" \"l\" \"m\" \"n\" \"o\" \"p\" \"q\" \"r\" \"s\" #> [20] \"t\" \"u\" \"v\" \"w\" \"x\" \"y\" \"z\" #>  #> $selected #>  [1] \"a\" \"b\" \"c\" \"d\" \"e\" \"f\" \"g\" \"h\" \"i\" \"j\" \"k\" \"l\" \"m\" \"n\" \"o\" \"p\" \"q\" \"r\" \"s\" #> [20] \"t\" \"u\" \"v\" \"w\" \"x\" \"y\" \"z\" #>  #> $fixed #> [1] FALSE #>  #> attr(,\"class\") #> [1] \"choices_selected\""},{"path":"https://insightsengineering.github.io/teal.transform/reference/are_needed_keys_provided.html","id":null,"dir":"Reference","previous_headings":"","what":"Checks whether the provided slices have the corresponding join keys — are_needed_keys_provided","title":"Checks whether the provided slices have the corresponding join keys — are_needed_keys_provided","text":"Checks whether provided slices corresponding join keys","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/are_needed_keys_provided.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Checks whether the provided slices have the corresponding join keys — are_needed_keys_provided","text":"","code":"are_needed_keys_provided(join_keys, merged_selector_list)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/are_needed_keys_provided.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Checks whether the provided slices have the corresponding join keys — are_needed_keys_provided","text":"join_keys (join_keys) provided join keys merged_selector_list (list) specification datasets' slices merge","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/are_needed_keys_provided.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Checks whether the provided slices have the corresponding join keys — are_needed_keys_provided","text":"TRUE pairs slices corresponding keys; FALSE otherwise","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/are_needed_keys_provided.html","id":"note","dir":"Reference","previous_headings":"","what":"Note","title":"Checks whether the provided slices have the corresponding join keys — are_needed_keys_provided","text":"merged_selector_list contains list descriptions data frame slices; coming single dataset. function checks whether pairs datasets join keys needed merge slices.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_check_parse_varname.html","id":null,"dir":"Reference","previous_headings":"","what":"Checks varname argument and convert to call — call_check_parse_varname","title":"Checks varname argument and convert to call — call_check_parse_varname","text":"Checks varname type parse character","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_check_parse_varname.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Checks varname argument and convert to call — call_check_parse_varname","text":"","code":"call_check_parse_varname(varname)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_check_parse_varname.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Checks varname argument and convert to call — call_check_parse_varname","text":"varname (name, call character(1)) name variable","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_choice.html","id":null,"dir":"Reference","previous_headings":"","what":"Choices condition call — call_condition_choice","title":"Choices condition call — call_condition_choice","text":"Compose choices condition call inputs.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_choice.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Choices condition call — call_condition_choice","text":"","code":"call_condition_choice(varname, choices)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_choice.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Choices condition call — call_condition_choice","text":"varname (name, call character(1)) name variable choices (vector)varname values match using == (single value) %% (vector) condition. choices can vector type output might converted: factor call composed choices converted character Date call composed choices converted character using format(choices) POSIXct, POSIXlt Call composed choices converted character using format(choices). One careful formatted date-time variable might loose precision (see format argument format.POSIXlt) output call insufficient exact comparison. case one specify varname = trunc(<varname>) possibly convert choices character)","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_choice.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Choices condition call — call_condition_choice","text":"call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_choice.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Choices condition call — call_condition_choice","text":"","code":"teal.transform:::call_condition_choice(\"SEX\", choices = c(1, 2)) #> SEX %in% c(1, 2) teal.transform:::call_condition_choice(as.name(\"SEX\"), choices = \"F\") #> SEX == \"F\" teal.transform:::call_condition_choice(\"SEX\", choices = c(\"F\", \"M\")) #> SEX %in% c(\"F\", \"M\") teal.transform:::call_condition_choice(\"SEX\", choices = factor(c(\"F\", \"M\"))) #> SEX %in% c(\"F\", \"M\") teal.transform:::call_condition_choice(\"x$SEX\", choices = Sys.Date()) #> x$SEX == \"2023-11-20\" teal.transform:::call_condition_choice(\"trunc(x$SEX)\", choices = Sys.time()) #> trunc(x$SEX) == \"2023-11-20 10:38:32\""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_logical.html","id":null,"dir":"Reference","previous_headings":"","what":"logical variable condition call — call_condition_logical","title":"logical variable condition call — call_condition_logical","text":"Compose logical variable condition call inputs","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_logical.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"logical variable condition call — call_condition_logical","text":"","code":"call_condition_logical(varname, choice)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_logical.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"logical variable condition call — call_condition_logical","text":"varname (name character(1)) name variable choice (logical(1)) chosen value","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_logical.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"logical variable condition call — call_condition_logical","text":"call call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_logical.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"logical variable condition call — call_condition_logical","text":"","code":"teal.transform:::call_condition_logical(\"event\", choice = TRUE) #> event teal.transform:::call_condition_logical(\"event\", choice = FALSE) #> !event"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range.html","id":null,"dir":"Reference","previous_headings":"","what":"numeric range condition call — call_condition_range","title":"numeric range condition call — call_condition_range","text":"Compose numeric range condition call inputs","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"numeric range condition call — call_condition_range","text":"","code":"call_condition_range(varname, range)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"numeric range condition call — call_condition_range","text":"varname (name character(1)) name variable range (numeric(2)) range variable","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"numeric range condition call — call_condition_range","text":"call call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"numeric range condition call — call_condition_range","text":"","code":"teal.transform:::call_condition_range(\"AGE\", range = c(1, 2)) #> AGE >= 1 & AGE <= 2 teal.transform:::call_condition_range(as.name(\"AGE\"), range = c(-1.2, 2.1)) #> AGE >= -1.2 & AGE <= 2.1 teal.transform:::call_condition_range(   teal.transform:::call_extract_list(\"ADSL\", \"AGE\"),   range = c(-1.2, 2.1) ) #> ADSL$AGE >= -1.2 & ADSL$AGE <= 2.1"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range_date.html","id":null,"dir":"Reference","previous_headings":"","what":"Date range condition call — call_condition_range_date","title":"Date range condition call — call_condition_range_date","text":"Compose Date range condition call inputs","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range_date.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Date range condition call — call_condition_range_date","text":"","code":"call_condition_range_date(varname, range)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range_date.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Date range condition call — call_condition_range_date","text":"varname (name character(1)) name variable range (Date) range variable","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range_date.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Date range condition call — call_condition_range_date","text":"call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range_date.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Date range condition call — call_condition_range_date","text":"","code":"teal.transform:::call_condition_range_date(   as.name(\"date\"),   range = c(Sys.Date(), Sys.Date() + 1) ) #> date >= as.Date(\"2023-11-20\") & date <= as.Date(\"2023-11-21\")"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range_posixct.html","id":null,"dir":"Reference","previous_headings":"","what":"POSIXct range condition call — call_condition_range_posixct","title":"POSIXct range condition call — call_condition_range_posixct","text":"Compose POSIXct range condition call inputs.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range_posixct.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"POSIXct range condition call — call_condition_range_posixct","text":"","code":"call_condition_range_posixct(varname, range, timezone = Sys.timezone())"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range_posixct.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"POSIXct range condition call — call_condition_range_posixct","text":"varname (name character(1)) name variable range (POSIXct) range variable. aware output uses truncated range format \"%Y-%m-%d %H:%M:%S\", means precision might lost. timezone (character(1)) specifies time zone used conversion. default Sys.timezone() used.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range_posixct.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"POSIXct range condition call — call_condition_range_posixct","text":"call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_condition_range_posixct.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"POSIXct range condition call — call_condition_range_posixct","text":"","code":"teal.transform:::call_condition_range_posixct(   varname = as.name(\"datetime\"),   range = c(Sys.time(), Sys.time() + 1),   timezone = \"UTC\" ) #> datetime >= as.POSIXct(\"2023-11-20 10:38:33\", tz = \"UTC\") & datetime <  #>     as.POSIXct(\"2023-11-20 10:38:35\", tz = \"UTC\")"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_array.html","id":null,"dir":"Reference","previous_headings":"","what":"Get call to subset and select array — call_extract_array","title":"Get call to subset and select array — call_extract_array","text":"Get call subset select array","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_array.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get call to subset and select array — call_extract_array","text":"","code":"call_extract_array(dataname = \".\", row = NULL, column = NULL, aisle = NULL)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_array.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get call to subset and select array — call_extract_array","text":"dataname (character(1) name) row (name, call, logical, integer, character) optional, name row condition column (name, call, logical, integer, character) optional, name column condition aisle (name, call, logical, integer, character) optional, name row condition","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_array.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get call to subset and select array — call_extract_array","text":"[ call conditions included specific Extract  call 3-dimensional array","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_array.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get call to subset and select array — call_extract_array","text":"","code":"teal.transform:::call_extract_array(   dataname = \"my_array\",   row = teal.transform:::call_condition_choice(\"my_array$SEX\", \"M\"),   column = call(\"c\", \"SEX\", \"AGE\"),   aisle = \"RNAseq_rnaaccess\" ) #> my_array[my_array$SEX == \"M\", c(\"SEX\", \"AGE\"), \"RNAseq_rnaaccess\"] teal.transform:::call_extract_array(   \"mae_object\",   column = teal.transform:::call_condition_choice(\"SEX\", \"M\") ) #> mae_object[, SEX == \"M\", ]"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_list.html","id":null,"dir":"Reference","previous_headings":"","what":"Compose extract call with $ operator — call_extract_list","title":"Compose extract call with $ operator — call_extract_list","text":"Compose extract call $ operator","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_list.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Compose extract call with $ operator — call_extract_list","text":"","code":"call_extract_list(dataname, varname, dollar = TRUE)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_list.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Compose extract call with $ operator — call_extract_list","text":"dataname (character(1) name) name object varname (character(1) name) name slot data dollar (logical(1)) whether returned call use $ [[ operator","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_list.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Compose extract call with $ operator — call_extract_list","text":"$ [[ call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_list.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Compose extract call with $ operator — call_extract_list","text":"","code":"teal.transform:::call_extract_list(\"ADSL\", \"SEX\") #> ADSL$SEX teal.transform:::call_extract_list(\"ADSL\", \"named element\") #> ADSL$\"named element\" teal.transform:::call_extract_list(as.name(\"ADSL\"), as.name(\"AGE\")) #> ADSL$AGE teal.transform:::call_extract_list(as.name(\"weird name\"), as.name(\"AGE\")) #> `weird name`$AGE teal.transform:::call_extract_list(as.name(\"ADSL\"), \"AGE\", dollar = FALSE) #> ADSL[[\"AGE\"]]"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_matrix.html","id":null,"dir":"Reference","previous_headings":"","what":"Get call to subset and select matrix — call_extract_matrix","title":"Get call to subset and select matrix — call_extract_matrix","text":"Get call subset select matrix","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_matrix.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get call to subset and select matrix — call_extract_matrix","text":"","code":"call_extract_matrix(dataname = \".\", row = NULL, column = NULL)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_matrix.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get call to subset and select matrix — call_extract_matrix","text":"dataname (character(1) name) row (name, call, logical, integer, character) optional, name row condition column (name, call, logical, integer, character) optional, name column condition","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_matrix.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get call to subset and select matrix — call_extract_matrix","text":"[ call conditions included specific Extract  call matrix","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_extract_matrix.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get call to subset and select matrix — call_extract_matrix","text":"","code":"teal.transform:::call_extract_matrix(   dataname = \"my_array\",   row = teal.transform:::call_condition_choice(\"my_array$SEX\", \"M\"),   column = call(\"c\", \"SEX\", \"AGE\") ) #> my_array[my_array$SEX == \"M\", c(\"SEX\", \"AGE\")] teal.transform:::call_extract_matrix(   \"mae_object\",   column = teal.transform:::call_condition_choice(\"SEX\", \"M\") ) #> mae_object[, SEX == \"M\"]"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_with_colon.html","id":null,"dir":"Reference","previous_headings":"","what":"Create a call using a function in a given namespace — call_with_colon","title":"Create a call using a function in a given namespace — call_with_colon","text":"arguments ... need quoted evaluated otherwise","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_with_colon.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create a call using a function in a given namespace — call_with_colon","text":"","code":"call_with_colon(name, ..., unlist_args = list())"},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_with_colon.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create a call using a function in a given namespace — call_with_colon","text":"name character function name, possibly using namespace colon ::, also works ::: (sometimes needed, strongly discouraged) ... arguments pass function name name unlist_args list extra arguments passed single list, avoids use .call function","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/call_with_colon.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create a call using a function in a given namespace — call_with_colon","text":"","code":"print_call_and_eval <- function(x) {   eval(print(x)) }  print_call_and_eval(   teal.transform:::call_with_colon(\"glue::glue\", \"x = {x}\", x = 10) ) #> glue::glue(\"x = {x}\", x = 10) #> x = 10 if (FALSE) { # mtcars$cyl evaluated print_call_and_eval(   teal.transform:::call_with_colon(\"dplyr::filter\", as.name(\"mtcars\"), mtcars$cyl == 6) )  # mtcars$cyl argument not evaluated immediately (in call expression) print_call_and_eval(   teal.transform:::call_with_colon(\"dplyr::filter\", as.name(\"mtcars\"), quote(cyl == 6)) )  # does not work because argument is evaluated and the # non-dplyr filter does not look inside mtcars # cannot eval because it does not pass checks because of non-standard evaluation call(\"filter\", as.name(\"mtcars\"), quote(cyl == 6)) # works, but non-dplyr filter is taken call(\"filter\", as.name(\"mtcars\"), mtcars$cyl == 6)  nb_args <- function(...) nargs() print_call_and_eval(   teal.transform:::call_with_colon(\"nb_args\", arg1 = 1, unlist_args = list(arg2 = 2, args3 = 3)) ) # duplicate arguments print_call_and_eval(   teal.transform:::call_with_colon(\"nb_args\", arg1 = 1, unlist_args = list(arg2 = 2, args2 = 2)) ) }"},{"path":"https://insightsengineering.github.io/teal.transform/reference/calls_combine_by.html","id":null,"dir":"Reference","previous_headings":"","what":"Combine calls by operator — calls_combine_by","title":"Combine calls by operator — calls_combine_by","text":"Combine list calls specific operator","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/calls_combine_by.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Combine calls by operator — calls_combine_by","text":"","code":"calls_combine_by(operator, calls)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/calls_combine_by.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Combine calls by operator — calls_combine_by","text":"operator (character(1) name) name/symbol operator. calls (list calls) list containing calls combined operator","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/calls_combine_by.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Combine calls by operator — calls_combine_by","text":"call combined call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/calls_combine_by.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Combine calls by operator — calls_combine_by","text":"","code":"teal.transform:::calls_combine_by(   \"&\",   calls = list(     teal.transform:::call_condition_choice(\"SEX\", \"F\"),     teal.transform:::call_condition_range(\"AGE\", c(20, 50)),     teal.transform:::call_condition_choice(\"ARM\", \"ARM: A\"),     TRUE   ) ) #> SEX == \"F\" & (AGE >= 20 & AGE <= 50) & ARM == \"ARM: A\" & TRUE"},{"path":"https://insightsengineering.github.io/teal.transform/reference/check_data_extract_spec_react.html","id":null,"dir":"Reference","previous_headings":"","what":"Function to check data_extract_specs — check_data_extract_spec_react","title":"Function to check data_extract_specs — check_data_extract_spec_react","text":"Checks dataname argument exists dataset. Checks selected filter columns exist within datasets. Throws shiny validation error requirements met.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/check_data_extract_spec_react.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Function to check data_extract_specs — check_data_extract_spec_react","text":"","code":"check_data_extract_spec_react(datasets, data_extract)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/check_data_extract_spec_react.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Function to check data_extract_specs — check_data_extract_spec_react","text":"datasets (FilteredData) object created using teal API data_extract (list) output data_extract module","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/check_data_extract_spec_react.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Function to check data_extract_specs — check_data_extract_spec_react","text":"NULL","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/check_data_merge_selectors.html","id":null,"dir":"Reference","previous_headings":"","what":"Validate data_extracts in merge_datasets — check_data_merge_selectors","title":"Validate data_extracts in merge_datasets — check_data_merge_selectors","text":"Validate selected inputs data_extract passing data_merge avoid dplyr errors unexpected results","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/check_data_merge_selectors.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Validate data_extracts in merge_datasets — check_data_merge_selectors","text":"","code":"check_data_merge_selectors(selector_list)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/check_data_merge_selectors.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Validate data_extracts in merge_datasets — check_data_merge_selectors","text":"selector_list (reactive) output data_extract_multiple_srv() reactive named list outputs data_extract_srv(). using reactive named list, names must identical shiny ids respective data_extract_ui().","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/check_data_merge_selectors.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Validate data_extracts in merge_datasets — check_data_merge_selectors","text":"NULL check successful","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/check_no_multiple_selection.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Checks that the extract_input specification does not allow multiple\nselection — check_no_multiple_selection","text":"","code":"check_no_multiple_selection(extract_input)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/check_no_multiple_selection.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Checks that the extract_input specification does not allow multiple\nselection — check_no_multiple_selection","text":"extract_input data_extract_spec list data_extract_spec NULL Stops condition met","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/choices_labeled.html","id":null,"dir":"Reference","previous_headings":"","what":"Set ","title":"Set ","text":"often useful choices_selected marks drop-boxes shiny::selectInput().","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/choices_labeled.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Set ","text":"","code":"choices_labeled(choices, labels, subset = NULL, types = NULL)  # S3 method for choices_labeled print(x, ...)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/choices_labeled.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Set ","text":"choices character / factor / numeric / logical vector. labels character vector containing labels applied choices. NA \"Label Missing\" used. subset vector subset choices. useful variables need named. argument used, returned vector match order. types Character vector containing types columns used applying appropriate icons choices_selected drop box. (e.g. \"numeric\") x object used select method. ... arguments passed methods.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/choices_labeled.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Set ","text":"named character vector","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/choices_labeled.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Set ","text":"either choices labels factors, coerced character. Duplicated elements choices get removed.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/choices_labeled.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Set ","text":"","code":"library(shiny)  ADSL <- teal.transform::rADSL ADTTE <- teal.transform::rADTTE choices1 <- choices_labeled(names(ADSL), teal.data::col_labels(ADSL, fill = FALSE)) choices2 <- choices_labeled(ADTTE$PARAMCD, ADTTE$PARAM) # if only a subset of variables are needed, use subset argument choices3 <- choices_labeled(   names(ADSL),   teal.data::col_labels(ADSL, fill = FALSE),   subset = c(\"ARMCD\", \"ARM\") ) if (FALSE) { shinyApp(   ui = fluidPage(     selectInput(\"c1\",       label = \"Choices from ADSL\",       choices = choices1,       selected = choices1[1]     ),     selectInput(\"c2\",       label = \"Choices from ADTTE\",       choices = choices2,       selected = choices2[1]     ),     selectInput(\"c3\",       label = \"Arm choices from ADSL\",       choices = choices3,       selected = choices3[1]     )   ),   server = function(input, output) {} ) }"},{"path":"https://insightsengineering.github.io/teal.transform/reference/choices_selected.html","id":null,"dir":"Reference","previous_headings":"","what":"Choices Selected — choices_selected","title":"Choices Selected — choices_selected","text":"Construct single list containing available choices, default selected value, additional settings order choices selected elements appearing first whether block user making selections. Can used ui input elements teal.widgets::optionalSelectInput()","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/choices_selected.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Choices Selected — choices_selected","text":"","code":"choices_selected(   choices,   selected = if (inherits(choices, \"delayed_data\")) NULL else choices[1],   keep_order = FALSE,   fixed = FALSE )  is.choices_selected(x)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/choices_selected.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Choices Selected — choices_selected","text":"choices (character) vector possible choices delayed_data object See variable_choices() value_choices(). selected (character) vector preselected options, (all_choices) object (delayed_data) object. delayed_data object choices must also delayed_data object. supplied default first element choices choices vector, NULL choices delayed_data object. keep_order (logical) case FALSE selected variables top drop-field. fixed optional, (logical) Whether block user select choices x object check","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/choices_selected.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Choices Selected — choices_selected","text":"Object class choices_selected type list contains specified choices, selected, keep_order fixed.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/choices_selected.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Choices Selected — choices_selected","text":"Please note order selected always follow order choices. keep_order argument set false run following code inside: choices <- c(selected, setdiff(choices, selected)) case want keep specific order choices, set keep_order TRUE.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/choices_selected.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Choices Selected — choices_selected","text":"","code":"library(shiny)  # all_choices example - semantically the same objects choices_selected(choices = letters, selected = all_choices()) #> $choices #>  [1] \"a\" \"b\" \"c\" \"d\" \"e\" \"f\" \"g\" \"h\" \"i\" \"j\" \"k\" \"l\" \"m\" \"n\" \"o\" \"p\" \"q\" \"r\" \"s\" #> [20] \"t\" \"u\" \"v\" \"w\" \"x\" \"y\" \"z\" #>  #> $selected #>  [1] \"a\" \"b\" \"c\" \"d\" \"e\" \"f\" \"g\" \"h\" \"i\" \"j\" \"k\" \"l\" \"m\" \"n\" \"o\" \"p\" \"q\" \"r\" \"s\" #> [20] \"t\" \"u\" \"v\" \"w\" \"x\" \"y\" \"z\" #>  #> $fixed #> [1] FALSE #>  #> attr(,\"class\") #> [1] \"choices_selected\" choices_selected(choices = letters, selected = letters) #> $choices #>  [1] \"a\" \"b\" \"c\" \"d\" \"e\" \"f\" \"g\" \"h\" \"i\" \"j\" \"k\" \"l\" \"m\" \"n\" \"o\" \"p\" \"q\" \"r\" \"s\" #> [20] \"t\" \"u\" \"v\" \"w\" \"x\" \"y\" \"z\" #>  #> $selected #>  [1] \"a\" \"b\" \"c\" \"d\" \"e\" \"f\" \"g\" \"h\" \"i\" \"j\" \"k\" \"l\" \"m\" \"n\" \"o\" \"p\" \"q\" \"r\" \"s\" #> [20] \"t\" \"u\" \"v\" \"w\" \"x\" \"y\" \"z\" #>  #> $fixed #> [1] FALSE #>  #> attr(,\"class\") #> [1] \"choices_selected\"  choices_selected(   choices = stats::setNames(LETTERS[1:5], paste(\"Letter\", LETTERS[1:5])),   selected = \"C\" ) #> $choices #> Letter C Letter A Letter B Letter D Letter E  #>      \"C\"      \"A\"      \"B\"      \"D\"      \"E\"  #>  #> $selected #> [1] \"C\" #>  #> $fixed #> [1] FALSE #>  #> attr(,\"class\") #> [1] \"choices_selected\"  ADSL <- teal.transform::rADSL choices_selected(variable_choices(ADSL), \"SEX\") #> $choices #> number of choices: 55  #>  #> SEX: Sex #> STUDYID: Study Identifier #> USUBJID: Unique Subject Identifier #> SUBJID: Subject Identifier for the Study #> SITEID: Study Site Identifier #> AGE: Age #> AGEU: Age Units #> RACE: Race #> ETHNIC: Ethnicity #> COUNTRY: Country #> DTHFL: Subject Death Flag #> INVID: Investigator Identifier #> INVNAM: Investigator Name #> ARM: Description of Planned Arm #> ARMCD: Planned Arm Code #> ACTARM: Description of Actual Arm #> ACTARMCD: Actual Arm Code #> TRT01P: Planned Treatment for Period 01 #> TRT01A: Actual Treatment for Period 01 #> TRT02P: Planned Treatment for Period 02 #> TRT02A: Actual Treatment for Period 02 #> REGION1: Geographic Region 1 #> STRATA1: Stratification Factor 1 #> STRATA2: Stratification Factor 2 #> BMRKR1: Continuous Level Biomarker 1 #> BMRKR2: Categorical Level Biomarker 2 #> ITTFL: Intent-To-Treat Population Flag #> SAFFL: Safety Population Flag #> BMEASIFL: Response Evaluable Population Flag #> BEP01FL: Biomarker Evaluable Population Flag #> AEWITHFL: AE Leading to Drug Withdrawal Flag #> RANDDT: Date of Randomization #> TRTSDTM: Datetime of First Exposure to Treatment #> TRTEDTM: Datetime of Last Exposure to Treatment #> TRT01SDTM: Datetime of First Exposure to Treatment in Period 01 #> TRT01EDTM: Datetime of Last Exposure in Period 01 #> TRT02SDTM: Datetime of First Exposure to Treatment in Period 02 #> TRT02EDTM: Datetime of Last Exposure to Treatment in Period 02 #> AP01SDTM: Period 01 Start Datetime #> AP01EDTM: Period 01 End Datetime #> AP02SDTM: Period 02 Start Datetime #> AP02EDTM: Period 02 End Datetime #> EOSSTT: End of Study Status #> EOTSTT: End of Treatment Status #> EOSDT: End of Study Date #> EOSDY: End of Study Relative Day #> DCSREAS: Reason for Discontinuation from Study #> DTHDT: Date of Death #> DTHCAUS: Cause of Death #> DTHCAT: Cause of Death Category #> LDDTHELD: Elapsed Days from Last Dose to Death #> LDDTHGR1: Last Dose to Death - Days Elapsed Grp 1 #> LSTALVDT: Date Last Known Alive #> DTHADY: Relative Day of Death #> ADTHAUT: Autopsy Performed #>  #>  #> $selected #> [1] \"SEX\" #>  #> $fixed #> [1] FALSE #>  #> attr(,\"class\") #> [1] \"choices_selected\"  # How to select nothing # use an empty character choices_selected(   choices = c(\"\", \"A\", \"B\", \"C\"),   selected = \"\" ) #> $choices #> [1] \"\"  \"A\" \"B\" \"C\" #>  #> $selected #> [1] \"\" #>  #> $fixed #> [1] FALSE #>  #> attr(,\"class\") #> [1] \"choices_selected\"  # How to allow the user to select nothing # use an empty character choices_selected(   choices = c(\"A\", \"\", \"B\", \"C\"),   selected = \"A\" ) #> $choices #> [1] \"A\" \"\"  \"B\" \"C\" #>  #> $selected #> [1] \"A\" #>  #> $fixed #> [1] FALSE #>  #> attr(,\"class\") #> [1] \"choices_selected\"   # How to make Nothing the Xth choice # just use keep_order choices_selected(   choices = c(\"A\", \"\", \"B\", \"C\"),   selected = \"A\",   keep_order = TRUE ) #> $choices #> [1] \"A\" \"\"  \"B\" \"C\" #>  #> $selected #> [1] \"A\" #>  #> $fixed #> [1] FALSE #>  #> attr(,\"class\") #> [1] \"choices_selected\"   # How to give labels to selections # by adding names - choices will be replaced by \"name\" in UI, not in code choices_selected(   choices = c(\"name for A\" = \"A\", \"Name for nothing\" = \"\", \"name for b\" = \"B\", \"name for C\" = \"C\"),   selected = \"A\" ) #> $choices #>       name for A Name for nothing       name for b       name for C  #>              \"A\"               \"\"              \"B\"              \"C\"  #>  #> $selected #> [1] \"A\" #>  #> $fixed #> [1] FALSE #>  #> attr(,\"class\") #> [1] \"choices_selected\"  # by using choices_labeled # labels will be shown behind the choice choices_selected(   choices = choices_labeled(     c(\"A\", \"\", \"B\", \"C\"),     c(\"name for A\", \"nothing\", \"name for B\", \"name for C\")   ),   selected = \"A\" ) #> $choices #> number of choices: 4  #>  #> A: name for A #> : nothing #> B: name for B #> C: name for C #>  #>  #> $selected #> [1] \"A\" #>  #> $fixed #> [1] FALSE #>  #> attr(,\"class\") #> [1] \"choices_selected\"  # Passing a `delayed_data` object to `selected` choices_selected(   choices = variable_choices(\"ADSL\"),   selected = variable_choices(\"ADSL\", subset = c(\"STUDYID\")) ) #> choices_selected with delayed data:  ADSL #> $ choices #>   variable_choices with delayed data: ADSL #>   $ data #>   [1] \"ADSL\" #>   $ subset #>   NULL #>   $ key #>   NULL #> $ selected #>   variable_choices with delayed data: ADSL #>   $ data #>   [1] \"ADSL\" #>   $ subset #>   [1] \"STUDYID\" #>   $ key #>   NULL #> $ keep_order #> [1] FALSE #> $ fixed #> [1] FALSE  # functional form (subsetting for factor variables only) of choices_selected # with delayed data loading choices_selected(variable_choices(\"ADSL\", subset = function(data) {   idx <- vapply(data, is.factor, logical(1))   return(names(data)[idx]) })) #> choices_selected with delayed data:  ADSL #> $ choices #>   variable_choices with delayed data: ADSL #>   $ data #>   [1] \"ADSL\" #>   $ subset #>   function(data) { #>   idx <- vapply(data, is.factor, logical(1)) #>   return(names(data)[idx]) #> } #> <environment: 0x563aa5d87bc0> #>   $ key #>   NULL #> $ selected #> NULL #> $ keep_order #> [1] FALSE #> $ fixed #> [1] FALSE  cs <- choices_selected(   choices = c(\"A\", \"B\", \"C\"),   selected = \"A\" )  ui <- fluidPage(   teal.widgets::optionalSelectInput(     inputId = \"id\",     choices = cs$choices,     selected = cs$selected   ) ) if (FALSE) { shinyApp(ui, server = function(input, output, session) {}) }"},{"path":"https://insightsengineering.github.io/teal.transform/reference/compose_and_enable_validators.html","id":null,"dir":"Reference","previous_headings":"","what":"Function to compose validators from data_extract_multiple_srv — compose_and_enable_validators","title":"Function to compose validators from data_extract_multiple_srv — compose_and_enable_validators","text":"function takes output data_extract_multiple_srv collates shinyvalidate::InputValidators returned single validator enables ","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/compose_and_enable_validators.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Function to compose validators from data_extract_multiple_srv — compose_and_enable_validators","text":"","code":"compose_and_enable_validators(iv, selector_list, validator_names = NULL)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/compose_and_enable_validators.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Function to compose validators from data_extract_multiple_srv — compose_and_enable_validators","text":"iv (shinyvalidate::InputValidator) validator. selector_list (reactive named list reactives). Typically output data_extract_multiple_srv. validators list (specifically selector_list()[[validator_names]]()iv) added iv. validator_names (character NULL). character validators elements selector_list() whose name list added. NULL validators added","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/compose_and_enable_validators.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Function to compose validators from data_extract_multiple_srv — compose_and_enable_validators","text":"(shinyvalidate::InputValidator) enabled iv appropriate validators added .","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/compose_and_enable_validators.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Function to compose validators from data_extract_multiple_srv — compose_and_enable_validators","text":"","code":"library(shiny) library(shinyvalidate) library(shinyjs) #>  #> Attaching package: ‘shinyjs’ #> The following object is masked from ‘package:shiny’: #>  #>     runExample #> The following objects are masked from ‘package:methods’: #>  #>     removeClass, show library(teal.widgets)  iris_extract <- data_extract_spec(   dataname = \"iris\",   select = select_spec(     label = \"Select variable:\",     choices = variable_choices(iris, colnames(iris)),     selected = \"Sepal.Length\",     multiple = TRUE,     fixed = FALSE   ) )  data_list <- list(iris = reactive(iris))  app <- shinyApp(   ui = fluidPage(     useShinyjs(),     standard_layout(       output = verbatimTextOutput(\"out1\"),       encoding = tagList(         data_extract_ui(           id = \"x_var\",           label = \"Please select an X column\",           data_extract_spec = iris_extract         ),         data_extract_ui(           id = \"y_var\",           label = \"Please select a Y column\",           data_extract_spec = iris_extract         ),         data_extract_ui(           id = \"col_var\",           label = \"Please select a color column\",           data_extract_spec = iris_extract         )       )     )   ),   server = function(input, output, session) {     exactly_2_validation <- function() {       ~ if (length(.) != 2) \"Exactly 2 'Y' column variables must be chosen\"     }       selector_list <- data_extract_multiple_srv(       list(x_var = iris_extract, y_var = iris_extract, col_var = iris_extract),       datasets = data_list,       select_validation_rule = list(         x_var = sv_required(\"Please select an X column\"),         y_var = compose_rules(           sv_required(\"Exactly 2 'Y' column variables must be chosen\"),           exactly_2_validation()         )       )     )     iv_r <- reactive({       iv <- InputValidator$new()       compose_and_enable_validators(         iv,         selector_list,         # if validator_names = NULL then all validators are used         # to turn on only \"x_var\" then set this argument to \"x_var\"         validator_names = NULL       )     })      output$out1 <- renderPrint({       if (iv_r()$is_valid()) {         ans <- lapply(selector_list(), function(x) {           cat(format_data_extract(x()), \"\\n\\n\")         })       } else {         \"Check that you have made a valid selection\"       }     })   } ) if (interactive()) {   shinyApp(app$ui, app$server) }"},{"path":"https://insightsengineering.github.io/teal.transform/reference/cond_data_extract_single_ui.html","id":null,"dir":"Reference","previous_headings":"","what":"Creates a panel that displays (with filter and column selection)\nconditionally on input[ns(","title":"Creates a panel that displays (with filter and column selection)\nconditionally on input[ns(","text":"Creates panel displays (filter column selection) conditionally input[ns(\"dataset\")] == dataname.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/cond_data_extract_single_ui.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Creates a panel that displays (with filter and column selection)\nconditionally on input[ns(","text":"","code":"cond_data_extract_single_ui(ns, single_data_extract_spec)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/cond_data_extract_single_ui.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Creates a panel that displays (with filter and column selection)\nconditionally on input[ns(","text":"ns (function) shiny namespace function single_data_extract_spec (data_extract_spec) specification extraction data application initialization. Generated data_extract_spec().","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/cond_data_extract_single_ui.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Creates a panel that displays (with filter and column selection)\nconditionally on input[ns(","text":"(shiny.tag) Shiny tag HTML code panel","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/cond_data_extract_single_ui.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Creates a panel that displays (with filter and column selection)\nconditionally on input[ns(","text":"","code":"teal.transform:::cond_data_extract_single_ui(   shiny::NS(\"TEST\"),   data_extract_spec(dataname = \"test\") ) #> <div data-display-if=\"input[&#39;TEST-dataset&#39;] == &#39;test&#39;\" data-ns-prefix=\"\"> #>   <div> #>     <div> #>       <div class=\"filter_spec\"> #>         <div> #>           <script> #>         $(function() { #>           $('#TEST-dataset_test_singleextract-filter1-col').on('change', function(e) { #>             var select_concat = $(this).val().length ? $(this).val().join(', ') : 'NULL'; #>             $('#TEST-dataset_test_singleextract-filter1-col_selected_text').html(select_concat); #>           }) #>         })<\/script> #>           <div> #>             <div id=\"TEST-dataset_test_singleextract-filter1-col_input\" style=\"display: block;\"> #>               <div class=\"form-group shiny-input-container\"> #>                 <label class=\"control-label\" id=\"TEST-dataset_test_singleextract-filter1-col-label\" for=\"TEST-dataset_test_singleextract-filter1-col\">Filter by<\/label> #>                 <select data-actions-box=\"false\" data-none-selected-text=\"- Nothing selected -\" data-max-options=\"1\" data-show-subtext=\"true\" data-live-search=\"false\" data-state-input=\"true\" id=\"TEST-dataset_test_singleextract-filter1-col\" class=\"selectpicker form-control\" multiple=\"multiple\"> #>                   <option value=\"test\" data-content=\"test\">test<\/option> #>                 <\/select> #>               <\/div> #>             <\/div> #>             <div id=\"TEST-dataset_test_singleextract-filter1-col_fixed\" style=\"display: none;\"> #>               <label class=\"control-label\">Filter by<\/label> #>               <code id=\"TEST-dataset_test_singleextract-filter1-col_selected_text\">NULL<\/code> #>             <\/div> #>           <\/div> #>         <\/div> #>         <div> #>           <script> #>         $(function() { #>           $('#TEST-dataset_test_singleextract-filter1-vals').on('change', function(e) { #>             var select_concat = $(this).val().length ? $(this).val().join(', ') : 'NULL'; #>             $('#TEST-dataset_test_singleextract-filter1-vals_selected_text').html(select_concat); #>           }) #>         })<\/script> #>           <div> #>             <div id=\"TEST-dataset_test_singleextract-filter1-vals_input\" style=\"display: block;\"> #>               <div class=\"form-group shiny-input-container\"> #>                 <label class=\"control-label shiny-label-null\" for=\"TEST-dataset_test_singleextract-filter1-vals\" id=\"TEST-dataset_test_singleextract-filter1-vals-label\"><\/label> #>                 <select data-actions-box=\"true\" data-none-selected-text=\"- Nothing selected -\" data-max-options=\"Inf\" data-show-subtext=\"true\" data-live-search=\"false\" data-state-input=\"true\" id=\"TEST-dataset_test_singleextract-filter1-vals\" class=\"selectpicker form-control\" multiple=\"multiple\"><option value=\"\"><\/option><\/select> #>               <\/div> #>             <\/div> #>             <div id=\"TEST-dataset_test_singleextract-filter1-vals_fixed\" style=\"display: none;\"> #>               <label class=\"control-label\"><\/label> #>               <code id=\"TEST-dataset_test_singleextract-filter1-vals_selected_text\">NULL<\/code> #>             <\/div> #>           <\/div> #>         <\/div> #>       <\/div> #>     <\/div> #>     <div> #>       <script> #>         $(function() { #>           $('#TEST-dataset_test_singleextract-select').on('change', function(e) { #>             var select_concat = $(this).val().length ? $(this).val().join(', ') : 'NULL'; #>             $('#TEST-dataset_test_singleextract-select_selected_text').html(select_concat); #>           }) #>         })<\/script> #>       <div> #>         <div id=\"TEST-dataset_test_singleextract-select_input\" style=\"display: block;\"> #>           <div class=\"form-group shiny-input-container\"> #>             <label class=\"control-label\" id=\"TEST-dataset_test_singleextract-select-label\" for=\"TEST-dataset_test_singleextract-select\">Select<\/label> #>             <select data-actions-box=\"true\" data-none-selected-text=\"- Nothing selected -\" data-max-options=\"Inf\" data-show-subtext=\"true\" data-live-search=\"false\" data-state-input=\"true\" id=\"TEST-dataset_test_singleextract-select\" class=\"selectpicker form-control\" multiple=\"multiple\"> #>               <option value=\"test\" data-content=\"test\">test<\/option> #>             <\/select> #>           <\/div> #>         <\/div> #>         <div id=\"TEST-dataset_test_singleextract-select_fixed\" style=\"display: none;\"> #>           <label class=\"control-label\">Select<\/label> #>           <code id=\"TEST-dataset_test_singleextract-select_selected_text\">NULL<\/code> #>         <\/div> #>       <\/div> #>     <\/div> #>     <div class=\"form-group shiny-input-container shinyjs-disabled shinyjs-hide\"> #>       <div class=\"checkbox\"> #>         <label> #>           <input id=\"TEST-dataset_test_singleextract-reshape\" type=\"checkbox\" class=\"shiny-input-checkbox\"/> #>           <span>Reshape long to wide format<\/span> #>         <\/label> #>       <\/div> #>     <\/div> #>   <\/div> #> <\/div>"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_filter_srv.html","id":null,"dir":"Reference","previous_headings":"","what":"Handles events emitted from the UI generated by data_extract_filter_ui. — data_extract_filter_srv","title":"Handles events emitted from the UI generated by data_extract_filter_ui. — data_extract_filter_srv","text":"Handles events emitted UI generated data_extract_filter_ui.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_filter_srv.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Handles events emitted from the UI generated by data_extract_filter_ui. — data_extract_filter_srv","text":"","code":"data_extract_filter_srv(id, datasets, filter)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_filter_srv.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Handles events emitted from the UI generated by data_extract_filter_ui. — data_extract_filter_srv","text":"id (character) id string datasets (named list) list reactive data.frame type objects. filter (filter_spec) filter generated call filter_spec()","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_filter_srv.html","id":"note","dir":"Reference","previous_headings":"","what":"Note","title":"Handles events emitted from the UI generated by data_extract_filter_ui. — data_extract_filter_srv","text":"shiny module server updates values vals teal.widgets::optionalSelectInput() widget. responsible setting initial values subsequent updates vals widget based input col widget.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_filter_ui.html","id":null,"dir":"Reference","previous_headings":"","what":"Returns a shiny.tag object with the UI for a filter_spec object — data_extract_filter_ui","title":"Returns a shiny.tag object with the UI for a filter_spec object — data_extract_filter_ui","text":"Returns shiny.tag object UI filter_spec object","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_filter_ui.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Returns a shiny.tag object with the UI for a filter_spec object — data_extract_filter_ui","text":"","code":"data_extract_filter_ui(filter, id = \"filter\")"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_filter_ui.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Returns a shiny.tag object with the UI for a filter_spec object — data_extract_filter_ui","text":"filter (filter_spec) object generated filter_spec() id (character(1)) shiny inputId generated shiny.tag","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_filter_ui.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Returns a shiny.tag object with the UI for a filter_spec object — data_extract_filter_ui","text":"shiny.tag defining filter_spec's UI element","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_filter_ui.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Returns a shiny.tag object with the UI for a filter_spec object — data_extract_filter_ui","text":"Creates two optionSelectInput elements (one column one values) based definition filter_spec() object.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_filter_ui.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Returns a shiny.tag object with the UI for a filter_spec object — data_extract_filter_ui","text":"","code":"teal.transform:::data_extract_filter_ui(filter = filter_spec(vars = \"test_var\"), id = \"test_id\") #> <div class=\"filter_spec\"> #>   <div class=\"shinyjs-hide\"> #>     <script> #>         $(function() { #>           $('#test_id-col').on('change', function(e) { #>             var select_concat = $(this).val().length ? $(this).val().join(', ') : 'NULL'; #>             $('#test_id-col_selected_text').html(select_concat); #>           }) #>         })<\/script> #>     <div> #>       <div id=\"test_id-col_input\" style=\"display: none;\"> #>         <div class=\"form-group shiny-input-container\"> #>           <label class=\"control-label shiny-label-null\" for=\"test_id-col\" id=\"test_id-col-label\"><\/label> #>           <select data-actions-box=\"true\" data-none-selected-text=\"- Nothing selected -\" data-max-options=\"Inf\" data-show-subtext=\"true\" data-live-search=\"false\" data-state-input=\"true\" id=\"test_id-col\" class=\"selectpicker form-control\" multiple=\"multiple\"><option value=\"test_var\" selected>test_var<\/option><\/select> #>         <\/div> #>       <\/div> #>       <div id=\"test_id-col_fixed\" style=\"display: block;\"> #>         <label class=\"control-label\"><\/label> #>         <code id=\"test_id-col_selected_text\">test_var<\/code> #>       <\/div> #>     <\/div> #>   <\/div> #>   <div> #>     <script> #>         $(function() { #>           $('#test_id-vals').on('change', function(e) { #>             var select_concat = $(this).val().length ? $(this).val().join(', ') : 'NULL'; #>             $('#test_id-vals_selected_text').html(select_concat); #>           }) #>         })<\/script> #>     <div> #>       <div id=\"test_id-vals_input\" style=\"display: block;\"> #>         <div class=\"form-group shiny-input-container\"> #>           <label class=\"control-label\" id=\"test_id-vals-label\" for=\"test_id-vals\">Filter by<\/label> #>           <select data-actions-box=\"false\" data-none-selected-text=\"- Nothing selected -\" data-max-options=\"1\" data-show-subtext=\"true\" data-live-search=\"false\" data-state-input=\"true\" id=\"test_id-vals\" class=\"selectpicker form-control\" multiple=\"multiple\"><option value=\"\"><\/option><\/select> #>         <\/div> #>       <\/div> #>       <div id=\"test_id-vals_fixed\" style=\"display: none;\"> #>         <label class=\"control-label\">Filter by<\/label> #>         <code id=\"test_id-vals_selected_text\">NULL<\/code> #>       <\/div> #>     <\/div> #>   <\/div> #> <\/div>"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_multiple_srv.html","id":null,"dir":"Reference","previous_headings":"","what":"Creates a named list of data_extract_srv output — data_extract_multiple_srv","title":"Creates a named list of data_extract_srv output — data_extract_multiple_srv","text":"data_extract_multiple_srv loops list data_extract given runs data_extract_srv one returning list reactive objects. suitable input (deprecated) data_merge_srv().","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_multiple_srv.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Creates a named list of data_extract_srv output — data_extract_multiple_srv","text":"","code":"data_extract_multiple_srv(data_extract, datasets, ...)  # S3 method for FilteredData data_extract_multiple_srv(data_extract, datasets, ...)  # S3 method for list data_extract_multiple_srv(   data_extract,   datasets,   join_keys = NULL,   select_validation_rule = NULL,   filter_validation_rule = NULL,   dataset_validation_rule = if (is.null(select_validation_rule) &&     is.null(filter_validation_rule)) {      NULL  } else {          shinyvalidate::sv_required(\"Please select a dataset\")  },   ... )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_multiple_srv.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Creates a named list of data_extract_srv output — data_extract_multiple_srv","text":"data_extract (named list data_extract_spec objects) list data_extract_spec objects. names elements list need correspond ids passed data_extract_ui. See example details. datasets (FilteredData list reactive non-reactive data.frame) object containing data either form teal.slice::FilteredData list data.frame. passing list non-reactive data.frame objects, converted reactive data.frames internally. passing list reactive non-reactive data.frame objects, argument join_keys required also. ... additional argument join_keys required datasets list data.frame. shall contain keys per dataset datasets. join_keys (join_keys NULL) join keys per dataset datasets. select_validation_rule (NULL, function named list function) shinyvalidate input validation select parts data_extract_ui data_extract require validation function can used directly ( .e. select_validation_rule = shinyvalidate::sv_required()). fine-grained control use list: select_validation_rule = list(extract_1 = sv_required(), extract2 = ~ (length(.) > 2) \"Error\"). NULL validation added. See example details. filter_validation_rule (NULL, function named list function) select_validation_rule filter (values) part data_extract_ui. dataset_validation_rule (NULL, function named list function) select_validation_rule choose dataset part data_extract_ui","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_multiple_srv.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Creates a named list of data_extract_srv output — data_extract_multiple_srv","text":"reactive named list containing outputs data_extract_srv(). Output list names data_extract input argument.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_multiple_srv.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Creates a named list of data_extract_srv output — data_extract_multiple_srv","text":"","code":"library(shiny) library(shinyvalidate) library(shinyjs) library(teal.widgets)  iris_select <- data_extract_spec(   dataname = \"iris\",   select = select_spec(     label = \"Select variable:\",     choices = variable_choices(iris, colnames(iris)),     selected = \"Sepal.Length\",     multiple = TRUE,     fixed = FALSE   ) )  iris_filter <- data_extract_spec(   dataname = \"iris\",   filter = filter_spec(     vars = \"Species\",     choices = c(\"setosa\", \"versicolor\", \"virginica\"),     selected = \"setosa\",     multiple = TRUE   ) )  data_list <- list(iris = reactive(iris))  app <- shinyApp(   ui = fluidPage(     useShinyjs(),     standard_layout(       output = verbatimTextOutput(\"out1\"),       encoding = tagList(         data_extract_ui(           id = \"x_var\",           label = \"Please select an X column\",           data_extract_spec = iris_select         ),         data_extract_ui(           id = \"species_var\",           label = \"Please select 2 Species\",           data_extract_spec = iris_filter         )       )     )   ),   server = function(input, output, session) {     exactly_2_validation <- function(msg) {       ~ if (length(.) != 2) msg     }       selector_list <- data_extract_multiple_srv(       list(x_var = iris_select, species_var = iris_filter),       datasets = data_list,       select_validation_rule = list(         x_var = sv_required(\"Please select an X column\")       ),       filter_validation_rule = list(         species_var = compose_rules(           sv_required(\"Exactly 2 Species must be chosen\"),           exactly_2_validation(\"Exactly 2 Species must be chosen\")         )       )     )     iv_r <- reactive({       iv <- InputValidator$new()       compose_and_enable_validators(         iv,         selector_list,         validator_names = NULL       )     })      output$out1 <- renderPrint({       if (iv_r()$is_valid()) {         ans <- lapply(selector_list(), function(x) {           cat(format_data_extract(x()), \"\\n\\n\")         })       } else {         \"Please fix errors in your selection\"       }     })   } ) if (interactive()) {   shinyApp(app$ui, app$server) }"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_read_srv.html","id":null,"dir":"Reference","previous_headings":"","what":"Returns a reactive list with values read from the inputs of data_extract_spec — data_extract_read_srv","title":"Returns a reactive list with values read from the inputs of data_extract_spec — data_extract_read_srv","text":"Returns reactive list values read inputs data_extract_spec","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_read_srv.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Returns a reactive list with values read from the inputs of data_extract_spec — data_extract_read_srv","text":"","code":"data_extract_read_srv(   id,   datasets,   single_data_extract_spec,   iv,   select_validation_rule = NULL,   filter_validation_rule = NULL )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_read_srv.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Returns a reactive list with values read from the inputs of data_extract_spec — data_extract_read_srv","text":"id (character) id string datasets (named list) list reactive data.frame type objects. single_data_extract_spec (data_extract_spec) data_extract_spec() object handle.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_read_srv.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Returns a reactive list with values read from the inputs of data_extract_spec — data_extract_read_srv","text":"shiny::reactive reactive list reactive values read UI","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_read_srv.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Returns a reactive list with values read from the inputs of data_extract_spec — data_extract_read_srv","text":"Reads UI inputs single data_extract_spec object running teal application. Returns reactive list reactive values read input. returned list keys corresponding UI inputs: select, filters, always_selected, reshape.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_select_ui.html","id":null,"dir":"Reference","previous_headings":"","what":"Returns a shiny.tag.list object with the UI for a select_spec object — data_extract_select_ui","title":"Returns a shiny.tag.list object with the UI for a select_spec object — data_extract_select_ui","text":"Returns shiny.tag.list object UI select_spec object","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_select_ui.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Returns a shiny.tag.list object with the UI for a select_spec object — data_extract_select_ui","text":"","code":"data_extract_select_ui(select, id = \"select\")"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_select_ui.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Returns a shiny.tag.list object with the UI for a select_spec object — data_extract_select_ui","text":"select (select_spec) definition select spec element. Setting select_spec() ordered = TRUE makes selector responsive variable selection order. id (character(1)) shiny inputId element","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_select_ui.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Returns a shiny.tag.list object with the UI for a select_spec object — data_extract_select_ui","text":"shiny.tag.list UI","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_select_ui.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Returns a shiny.tag.list object with the UI for a select_spec object — data_extract_select_ui","text":"","code":"teal.transform:::data_extract_select_ui(   select = select_spec(choices = \"test_choice\"),   id = \"test_id\" ) #> <div> #>   <script> #>         $(function() { #>           $('#test_id').on('change', function(e) { #>             var select_concat = $(this).val().length ? $(this).val().join(', ') : 'NULL'; #>             $('#test_id_selected_text').html(select_concat); #>           }) #>         })<\/script> #>   <div> #>     <div id=\"test_id_input\" style=\"display: block;\"> #>       <div class=\"form-group shiny-input-container\"> #>         <label class=\"control-label\" id=\"test_id-label\" for=\"test_id\">Select<\/label> #>         <select data-actions-box=\"false\" data-none-selected-text=\"- Nothing selected -\" data-max-options=\"1\" data-show-subtext=\"true\" data-live-search=\"false\" data-state-input=\"true\" id=\"test_id\" class=\"selectpicker form-control\" multiple=\"multiple\"><option value=\"test_choice\" selected>test_choice<\/option><\/select> #>       <\/div> #>     <\/div> #>     <div id=\"test_id_fixed\" style=\"display: none;\"> #>       <label class=\"control-label\">Select<\/label> #>       <code id=\"test_id_selected_text\">test_choice<\/code> #>     <\/div> #>   <\/div> #> <\/div>"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_single_srv.html","id":null,"dir":"Reference","previous_headings":"","what":"The server function for a single data_extract_spec object — data_extract_single_srv","title":"The server function for a single data_extract_spec object — data_extract_single_srv","text":"server function single data_extract_spec object","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_single_srv.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"The server function for a single data_extract_spec object — data_extract_single_srv","text":"","code":"data_extract_single_srv(id, datasets, single_data_extract_spec)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_single_srv.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"The server function for a single data_extract_spec object — data_extract_single_srv","text":"id (character) id string datasets (named list) list reactive data.frame type objects. single_data_extract_spec (data_extract_spec) data_extract_spec() object handle.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_single_srv.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"The server function for a single data_extract_spec object — data_extract_single_srv","text":"NULL","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_single_srv.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"The server function for a single data_extract_spec object — data_extract_single_srv","text":"Shiny server function handling single data_extract_spec object.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_single_ui.html","id":null,"dir":"Reference","previous_headings":"","what":"Returns a shiny.tag with the UI elements for a data_extract_spec — data_extract_single_ui","title":"Returns a shiny.tag with the UI elements for a data_extract_spec — data_extract_single_ui","text":"Returns shiny.tag UI elements data_extract_spec","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_single_ui.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Returns a shiny.tag with the UI elements for a data_extract_spec — data_extract_single_ui","text":"","code":"data_extract_single_ui(id = NULL, single_data_extract_spec)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_single_ui.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Returns a shiny.tag with the UI elements for a data_extract_spec — data_extract_single_ui","text":"id (character(1)) id module single_data_extract_spec (data_extract_spec) data_extract_spec() object handle.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_single_ui.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Returns a shiny.tag with the UI elements for a data_extract_spec — data_extract_single_ui","text":"shiny.tag HTML element defining UI","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_single_ui.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Returns a shiny.tag with the UI elements for a data_extract_spec — data_extract_single_ui","text":"Creates shiny.tag element defining UI elements corresponding single data_extract_spec object.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_single_ui.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Returns a shiny.tag with the UI elements for a data_extract_spec — data_extract_single_ui","text":"","code":"teal.transform:::data_extract_single_ui(id = \"test\", data_extract_spec(\"extract\")) #> <div> #>   <div> #>     <div class=\"filter_spec\"> #>       <div> #>         <script> #>         $(function() { #>           $('#test-filter1-col').on('change', function(e) { #>             var select_concat = $(this).val().length ? $(this).val().join(', ') : 'NULL'; #>             $('#test-filter1-col_selected_text').html(select_concat); #>           }) #>         })<\/script> #>         <div> #>           <div id=\"test-filter1-col_input\" style=\"display: block;\"> #>             <div class=\"form-group shiny-input-container\"> #>               <label class=\"control-label\" id=\"test-filter1-col-label\" for=\"test-filter1-col\">Filter by<\/label> #>               <select data-actions-box=\"false\" data-none-selected-text=\"- Nothing selected -\" data-max-options=\"1\" data-show-subtext=\"true\" data-live-search=\"false\" data-state-input=\"true\" id=\"test-filter1-col\" class=\"selectpicker form-control\" multiple=\"multiple\"> #>                 <option value=\"extract\" data-content=\"extract\">extract<\/option> #>               <\/select> #>             <\/div> #>           <\/div> #>           <div id=\"test-filter1-col_fixed\" style=\"display: none;\"> #>             <label class=\"control-label\">Filter by<\/label> #>             <code id=\"test-filter1-col_selected_text\">NULL<\/code> #>           <\/div> #>         <\/div> #>       <\/div> #>       <div> #>         <script> #>         $(function() { #>           $('#test-filter1-vals').on('change', function(e) { #>             var select_concat = $(this).val().length ? $(this).val().join(', ') : 'NULL'; #>             $('#test-filter1-vals_selected_text').html(select_concat); #>           }) #>         })<\/script> #>         <div> #>           <div id=\"test-filter1-vals_input\" style=\"display: block;\"> #>             <div class=\"form-group shiny-input-container\"> #>               <label class=\"control-label shiny-label-null\" for=\"test-filter1-vals\" id=\"test-filter1-vals-label\"><\/label> #>               <select data-actions-box=\"true\" data-none-selected-text=\"- Nothing selected -\" data-max-options=\"Inf\" data-show-subtext=\"true\" data-live-search=\"false\" data-state-input=\"true\" id=\"test-filter1-vals\" class=\"selectpicker form-control\" multiple=\"multiple\"><option value=\"\"><\/option><\/select> #>             <\/div> #>           <\/div> #>           <div id=\"test-filter1-vals_fixed\" style=\"display: none;\"> #>             <label class=\"control-label\"><\/label> #>             <code id=\"test-filter1-vals_selected_text\">NULL<\/code> #>           <\/div> #>         <\/div> #>       <\/div> #>     <\/div> #>   <\/div> #>   <div> #>     <script> #>         $(function() { #>           $('#test-select').on('change', function(e) { #>             var select_concat = $(this).val().length ? $(this).val().join(', ') : 'NULL'; #>             $('#test-select_selected_text').html(select_concat); #>           }) #>         })<\/script> #>     <div> #>       <div id=\"test-select_input\" style=\"display: block;\"> #>         <div class=\"form-group shiny-input-container\"> #>           <label class=\"control-label\" id=\"test-select-label\" for=\"test-select\">Select<\/label> #>           <select data-actions-box=\"true\" data-none-selected-text=\"- Nothing selected -\" data-max-options=\"Inf\" data-show-subtext=\"true\" data-live-search=\"false\" data-state-input=\"true\" id=\"test-select\" class=\"selectpicker form-control\" multiple=\"multiple\"> #>             <option value=\"extract\" data-content=\"extract\">extract<\/option> #>           <\/select> #>         <\/div> #>       <\/div> #>       <div id=\"test-select_fixed\" style=\"display: none;\"> #>         <label class=\"control-label\">Select<\/label> #>         <code id=\"test-select_selected_text\">NULL<\/code> #>       <\/div> #>     <\/div> #>   <\/div> #>   <div class=\"form-group shiny-input-container shinyjs-disabled shinyjs-hide\"> #>     <div class=\"checkbox\"> #>       <label> #>         <input id=\"test-reshape\" type=\"checkbox\" class=\"shiny-input-checkbox\"/> #>         <span>Reshape long to wide format<\/span> #>       <\/label> #>     <\/div> #>   <\/div> #> <\/div>"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_spec.html","id":null,"dir":"Reference","previous_headings":"","what":"Data Extract input for teal modules — data_extract_spec","title":"Data Extract input for teal modules — data_extract_spec","text":"Data Extract input can used filter select columns data set. function enables input teal. Please use constructor function data_extract_spec set . Note checks based columns can done data referred name.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_spec.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data Extract input for teal modules — data_extract_spec","text":"","code":"data_extract_spec(dataname, select = NULL, filter = NULL, reshape = FALSE)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_spec.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data Extract input for teal modules — data_extract_spec","text":"dataname (character) name dataset extracted. select (NULL, select_spec-S3 class delayed_select_spec) Columns selected input dataset mentioned dataname. setup can created using select_spec function. filter (NULL filter_spec respective delayed version) Setup filtering key columns inside dataset. setup can created using filter_spec function. Please note select filter set NULL, result filter spec UI variables possible choices select spec multiple set TRUE. reshape (logical) whether reshape long wide. Note used case long dataset multiple keys selected filter part.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_spec.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Data Extract input for teal modules — data_extract_spec","text":"select_spec filter_spec","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_spec.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Data Extract input for teal modules — data_extract_spec","text":"","code":"adtte_filters <- filter_spec(   vars = c(\"PARAMCD\", \"CNSR\"),   sep = \"-\",   choices = c(\"OS-1\" = \"OS-1\", \"OS-0\" = \"OS-0\", \"PFS-1\" = \"PFS-1\"),   selected = \"OS-1\",   multiple = FALSE,   label = \"Choose endpoint and Censor\" )  data_extract_spec(   dataname = \"ADTTE\",   filter = adtte_filters,   select = select_spec(     choices = c(\"AVAL\", \"BMRKR1\", \"AGE\"),     selected = c(\"AVAL\", \"BMRKR1\"),     multiple = TRUE,     fixed = FALSE,     label = \"Column\"   ) ) #> $dataname #> [1] \"ADTTE\" #>  #> $select #> $choices #>     AVAL   BMRKR1      AGE  #>   \"AVAL\" \"BMRKR1\"    \"AGE\"  #>  #> $selected #>     AVAL   BMRKR1  #>   \"AVAL\" \"BMRKR1\"  #>  #> $multiple #> [1] TRUE #>  #> $fixed #> [1] FALSE #>  #> $always_selected #> NULL #>  #> $ordered #> [1] FALSE #>  #> $label #> [1] \"Column\" #>  #> attr(,\"class\") #> [1] \"select_spec\" #>  #> $filter #> $filter[[1]] #> filter_spec with delayed data: #> $ vars_choices #> [1] \"PARAMCD\" \"CNSR\"    #> $ vars_selected #> [1] \"PARAMCD\" \"CNSR\"    #> $ vars_label #> NULL #> $ vars_fixed #> [1] TRUE #> $ vars_multiple #> [1] TRUE #> $ choices #>    OS-1    OS-0   PFS-1  #>  \"OS-1\"  \"OS-0\" \"PFS-1\"  #> $ selected #> [1] \"OS-1\" #> $ label #> [1] \"Choose endpoint and Censor\" #> $ multiple #> [1] FALSE #> $ fixed #> [1] FALSE #> $ sep #> [1] \"-\" #> $ drop_keys #> [1] FALSE #> $ dataname #> [1] \"ADTTE\" #> $ initialized #> [1] FALSE #>  #>  #> $reshape #> [1] FALSE #>  #> attr(,\"class\") #> [1] \"data_extract_spec\"  data_extract_spec(   dataname = \"ADSL\",   filter = NULL,   select = select_spec(     choices = c(\"AGE\", \"SEX\", \"USUBJID\"),     selected = c(\"SEX\"),     multiple = FALSE,     fixed = FALSE   ) ) #> $dataname #> [1] \"ADSL\" #>  #> $select #> $choices #>       AGE       SEX   USUBJID  #>     \"AGE\"     \"SEX\" \"USUBJID\"  #>  #> $selected #>   SEX  #> \"SEX\"  #>  #> $multiple #> [1] FALSE #>  #> $fixed #> [1] FALSE #>  #> $always_selected #> NULL #>  #> $ordered #> [1] FALSE #>  #> $label #> [1] \"Select\" #>  #> attr(,\"class\") #> [1] \"select_spec\" #>  #> $filter #> NULL #>  #> $reshape #> [1] FALSE #>  #> attr(,\"class\") #> [1] \"data_extract_spec\" data_extract_spec(   dataname = \"ADSL\",   filter = filter_spec(     vars = variable_choices(\"ADSL\", subset = c(\"AGE\"))   ) ) #> data_extract_spec with delayed data: ADSL #>  #> $ dataname #> [1] \"ADSL\" #> $ select #> NULL #> $ filter #>   [[1]] #>     filter_spec with delayed data: #>     $ vars_choices #>       variable_choices with delayed data: ADSL #>       $ data #>       [1] \"ADSL\" #>       $ subset #>       [1] \"AGE\" #>       $ key #>       NULL #>     $ vars_selected #>       variable_choices with delayed data: ADSL #>       $ data #>       [1] \"ADSL\" #>       $ subset #>       [1] \"AGE\" #>       $ key #>       NULL #>     $ vars_label #>     NULL #>     $ vars_fixed #>     [1] TRUE #>     $ vars_multiple #>     [1] TRUE #>     $ choices #>     NULL #>     $ selected #>     NULL #>     $ label #>     [1] \"Filter by\" #>     $ multiple #>     [1] FALSE #>     $ fixed #>     [1] FALSE #>     $ sep #>     [1] \" - \" #>     $ drop_keys #>     [1] FALSE #>     $ dataname #>     [1] \"ADSL\" #>     $ initialized #>     [1] FALSE #> $ reshape #> [1] FALSE  dynamic_filter <- filter_spec(   vars = choices_selected(variable_choices(\"ADSL\"), \"COUNTRY\"),   multiple = TRUE ) data_extract_spec(   dataname = \"ADSL\",   filter = dynamic_filter ) #> data_extract_spec with delayed data: ADSL #>  #> $ dataname #> [1] \"ADSL\" #> $ select #> NULL #> $ filter #>   [[1]] #>     filter_spec with delayed data: #>     $ vars_choices #>       variable_choices with delayed data: ADSL #>       $ data #>       [1] \"ADSL\" #>       $ subset #>       NULL #>       $ key #>       NULL #>     $ vars_selected #>     [1] \"COUNTRY\" #>     $ vars_label #>     [1] \"Filter by\" #>     $ vars_fixed #>     [1] FALSE #>     $ vars_multiple #>     [1] FALSE #>     $ choices #>     NULL #>     $ selected #>     NULL #>     $ label #>     NULL #>     $ multiple #>     [1] TRUE #>     $ fixed #>     [1] FALSE #>     $ sep #>     [1] \" - \" #>     $ drop_keys #>     [1] FALSE #>     $ dataname #>     [1] \"ADSL\" #>     $ initialized #>     [1] FALSE #> $ reshape #> [1] FALSE"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_srv.html","id":null,"dir":"Reference","previous_headings":"","what":"Extraction of the selector(s) details — data_extract_srv","title":"Extraction of the selector(s) details — data_extract_srv","text":"Extracting details selection(s) data_extract_ui elements.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_srv.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Extraction of the selector(s) details — data_extract_srv","text":"","code":"data_extract_srv(id, datasets, data_extract_spec, ...)  # S3 method for FilteredData data_extract_srv(id, datasets, data_extract_spec, ...)  # S3 method for list data_extract_srv(   id,   datasets,   data_extract_spec,   join_keys = NULL,   select_validation_rule = NULL,   filter_validation_rule = NULL,   dataset_validation_rule = if (is.null(select_validation_rule) &&     is.null(filter_validation_rule)) {      NULL  } else {          shinyvalidate::sv_required(\"Please select a dataset\")  },   ... )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_srv.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Extraction of the selector(s) details — data_extract_srv","text":"id ID string corresponds ID used call module's UI function. datasets (FilteredData list reactive non-reactive data.frame) object containing data either form teal.slice::FilteredData list data.frame. passing list non-reactive data.frame objects, converted reactive data.frames internally. passing list reactive non-reactive data.frame objects, argument join_keys required also. data_extract_spec (data_extract_spec list data_extract_spec) list data filter select information constructed data_extract_spec. ... additional argument join_keys required datasets list data.frame. shall contain keys per dataset datasets. join_keys (join_keys NULL) keys per dataset datasets select_validation_rule (NULL function) shinyvalidate input validation select parts data_extract_ui. can use validation function directly (.e. select_validation_rule = shinyvalidate::sv_required()) fine-grained control use function: select_validation_rule = ~ (length(.) > 2) \"Error\". NULL validation added. See example details. filter_validation_rule (NULL function) select_validation_rule filter (values) part data_extract_ui. dataset_validation_rule (NULL function) select_validation_rule choose dataset part data_extract_ui","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_srv.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Extraction of the selector(s) details — data_extract_srv","text":"reactive list containing following fields: filters: list information filters applied data set. select: variables selected dataset. always_selected: column names data set always selected. reshape: Whether reshape long wide applied . dataname: name data set. internal_id: id corresponding shiny input element. keys: names columns can used merge data set. iv:shinyvalidate::InputValidator containing validator data_extract","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_srv.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Extraction of the selector(s) details — data_extract_srv","text":"data_extract_srv","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_srv.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Extraction of the selector(s) details — data_extract_srv","text":"","code":"library(shiny) library(shinyvalidate)  ADSL <- data.frame(   STUDYID = \"A\",   USUBJID = LETTERS[1:10],   SEX = rep(c(\"F\", \"M\"), 5),   AGE = rpois(10, 30),   BMRKR1 = rlnorm(10) )  adsl_extract <- data_extract_spec(   dataname = \"ADSL\",   filter = filter_spec(vars = \"SEX\", choices = c(\"F\", \"M\"), selected = \"F\"),   select = select_spec(     label = \"Select variable:\",     choices = variable_choices(ADSL, c(\"AGE\", \"BMRKR1\")),     selected = \"AGE\",     multiple = TRUE,     fixed = FALSE   ) )  # Using reactive list of data.frames data_list <- list(ADSL = reactive(ADSL))  join_keys <- teal.data::join_keys(teal.data::join_key(\"ADSL\", \"ADSL\", c(\"STUDYID\", \"USUBJID\")))  app <- shinyApp(   ui = fluidPage(     teal.widgets::standard_layout(       output = verbatimTextOutput(\"out1\"),       encoding = tagList(         data_extract_ui(           id = \"adsl_var\",           label = \"ADSL selection\",           data_extract_spec = adsl_extract         )       )     )   ),   server = function(input, output, session) {     adsl_reactive_input <- data_extract_srv(       id = \"adsl_var\",       datasets = data_list,       data_extract_spec = adsl_extract,       join_keys = join_keys,       select_validation_rule = sv_required(\"Please select a variable.\")     )      iv_r <- reactive({       iv <- InputValidator$new()       iv$add_validator(adsl_reactive_input()$iv)       iv$enable()       iv     })      output$out1 <- renderPrint({       if (iv_r()$is_valid()) {         cat(format_data_extract(adsl_reactive_input()))       } else {         \"Please fix errors in your selection\"       }     })   } ) if (interactive()) {   shinyApp(app$ui, app$server) }  # Using FilteredData - Note this method will be deprecated datasets <- teal.slice::init_filtered_data(   list(ADSL = list(dataset = ADSL)),   join_keys = teal.data::join_keys(     teal.data::join_key(\"ADSL\", \"ADSL\", c(\"USUBJID\", \"STUDYID\"))   ) )  app <- shinyApp(   ui = fluidPage(     teal.widgets::standard_layout(       output = verbatimTextOutput(\"out1\"),       encoding = tagList(         data_extract_ui(           id = \"adsl_var\",           label = \"ADSL selection\",           data_extract_spec = adsl_extract         )       )     )   ),   server = function(input, output, session) {     adsl_reactive_input <- data_extract_srv(       id = \"adsl_var\",       datasets = datasets,       data_extract_spec = adsl_extract     )      output$out1 <- renderPrint(adsl_reactive_input())   } ) if (interactive()) {   shinyApp(app$ui, app$server) }"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_ui.html","id":null,"dir":"Reference","previous_headings":"","what":"teal data extraction module user-interface — data_extract_ui","title":"teal data extraction module user-interface — data_extract_ui","text":"functionality used encoding panel teal app. allow app-developers specify data_extract_spec object. object used teal module variables filtered data CDISC datasets. can use function way shiny module UI. corresponding server module can found data_extract_srv().","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_ui.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"teal data extraction module user-interface — data_extract_ui","text":"","code":"data_extract_ui(id, label, data_extract_spec, is_single_dataset = FALSE)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_ui.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"teal data extraction module user-interface — data_extract_ui","text":"id (character) shiny input unique identifier label (character) Label data extract input data_extract_spec (list data_extract_spec) outcome listing data_extract_spec constructor calls. is_single_dataset (logical) FALSE display dataset widget","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_ui.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"teal data extraction module user-interface — data_extract_ui","text":"shiny shiny::selectInputs allow define extract data specific dataset. input elements returned inside shiny::div container. three inputs rendered Dataset select Optional. one data_extract_spec handed function, shiny shiny::selectInput rendered. Else just name dataset given. Filter Panel Optional. data_extract_spec contains filter element shiny shiny::selectInput rendered options filter dataset. Select panel shiny shiny::selectInput select columns dataset go analysis. output can analyzed using data_extract_srv(...).","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_extract_ui.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"teal data extraction module user-interface — data_extract_ui","text":"","code":"library(shiny)  adtte_filters <- filter_spec(   vars = c(\"PARAMCD\", \"CNSR\"),   sep = \"-\",   choices = c(\"OS-1\" = \"OS-1\", \"OS-0\" = \"OS-0\", \"PFS-1\" = \"PFS-1\"),   selected = \"OS-1\",   multiple = FALSE,   label = \"Choose endpoint and Censor\" )  response_spec <- data_extract_spec(   dataname = \"ADTTE\",   filter = adtte_filters,   select = select_spec(     choices = c(\"AVAL\", \"BMRKR1\", \"AGE\"),     selected = c(\"AVAL\", \"BMRKR1\"),     multiple = TRUE,     fixed = FALSE,     label = \"Column\"   ) ) # Call to use inside your teal module UI function teal.widgets::standard_layout(   output = tableOutput(\"table\"),   encoding = div(     data_extract_ui(       id = \"regressor\",       label = \"Regressor Variable\",       data_extract_spec = response_spec     )   ) ) #> <div class=\"row\"> #>   <div class=\"col-md-3\"> #>     <div class=\"well\"> #>       <div> #>         <style type=\"text/css\">/* teal.transform data_extract css */ #>  #> .data-extract { #>   border-left: 3px solid #e3e3e3; #>   padding-left: 0.6em; #>   border-radius: 5px; #>   margin-left: -0.6em; #>   margin-bottom: 1em; #> } #>  #> .data-extract label.control-label { #>   font-weight: normal; #>   color: grey; #> } #>  #> .data-extract .filter_spec > div:first-child { #>   margin-bottom: 5px; #> }<\/style> #>         <div class=\"data-extract\"> #>           <label>Regressor Variable<\/label> #>           <span class=\"help-block\"> #>             Dataset: #>             <code>ADTTE<\/code> #>           <\/span> #>           <div> #>             <div> #>               <div class=\"filter_spec\"> #>                 <div class=\"shinyjs-hide\"> #>                   <script> #>         $(function() { #>           $('#regressor-dataset_ADTTE_singleextract-filter1-col').on('change', function(e) { #>             var select_concat = $(this).val().length ? $(this).val().join(', ') : 'NULL'; #>             $('#regressor-dataset_ADTTE_singleextract-filter1-col_selected_text').html(select_concat); #>           }) #>         })<\/script> #>                   <div> #>                     <div id=\"regressor-dataset_ADTTE_singleextract-filter1-col_input\" style=\"display: none;\"> #>                       <div class=\"form-group shiny-input-container\"> #>                         <label class=\"control-label shiny-label-null\" for=\"regressor-dataset_ADTTE_singleextract-filter1-col\" id=\"regressor-dataset_ADTTE_singleextract-filter1-col-label\"><\/label> #>                         <select data-actions-box=\"true\" data-none-selected-text=\"- Nothing selected -\" data-max-options=\"Inf\" data-show-subtext=\"true\" data-live-search=\"false\" data-state-input=\"true\" id=\"regressor-dataset_ADTTE_singleextract-filter1-col\" class=\"selectpicker form-control\" multiple=\"multiple\"><option value=\"PARAMCD\" selected>PARAMCD<\/option> #> <option value=\"CNSR\" selected>CNSR<\/option><\/select> #>                       <\/div> #>                     <\/div> #>                     <div id=\"regressor-dataset_ADTTE_singleextract-filter1-col_fixed\" style=\"display: block;\"> #>                       <label class=\"control-label\"><\/label> #>                       <code id=\"regressor-dataset_ADTTE_singleextract-filter1-col_selected_text\">PARAMCD, CNSR<\/code> #>                     <\/div> #>                   <\/div> #>                 <\/div> #>                 <div> #>                   <script> #>         $(function() { #>           $('#regressor-dataset_ADTTE_singleextract-filter1-vals').on('change', function(e) { #>             var select_concat = $(this).val().length ? $(this).val().join(', ') : 'NULL'; #>             $('#regressor-dataset_ADTTE_singleextract-filter1-vals_selected_text').html(select_concat); #>           }) #>         })<\/script> #>                   <div> #>                     <div id=\"regressor-dataset_ADTTE_singleextract-filter1-vals_input\" style=\"display: block;\"> #>                       <div class=\"form-group shiny-input-container\"> #>                         <label class=\"control-label\" id=\"regressor-dataset_ADTTE_singleextract-filter1-vals-label\" for=\"regressor-dataset_ADTTE_singleextract-filter1-vals\">Choose endpoint and Censor<\/label> #>                         <select data-actions-box=\"false\" data-none-selected-text=\"- Nothing selected -\" data-max-options=\"1\" data-show-subtext=\"true\" data-live-search=\"false\" data-state-input=\"true\" id=\"regressor-dataset_ADTTE_singleextract-filter1-vals\" class=\"selectpicker form-control\" multiple=\"multiple\"><option value=\"OS-1\" selected>OS-1<\/option> #> <option value=\"OS-0\">OS-0<\/option> #> <option value=\"PFS-1\">PFS-1<\/option><\/select> #>                       <\/div> #>                     <\/div> #>                     <div id=\"regressor-dataset_ADTTE_singleextract-filter1-vals_fixed\" style=\"display: none;\"> #>                       <label class=\"control-label\">Choose endpoint and Censor<\/label> #>                       <code id=\"regressor-dataset_ADTTE_singleextract-filter1-vals_selected_text\">OS-1<\/code> #>                     <\/div> #>                   <\/div> #>                 <\/div> #>               <\/div> #>             <\/div> #>             <div> #>               <script> #>         $(function() { #>           $('#regressor-dataset_ADTTE_singleextract-select').on('change', function(e) { #>             var select_concat = $(this).val().length ? $(this).val().join(', ') : 'NULL'; #>             $('#regressor-dataset_ADTTE_singleextract-select_selected_text').html(select_concat); #>           }) #>         })<\/script> #>               <div> #>                 <div id=\"regressor-dataset_ADTTE_singleextract-select_input\" style=\"display: block;\"> #>                   <div class=\"form-group shiny-input-container\"> #>                     <label class=\"control-label\" id=\"regressor-dataset_ADTTE_singleextract-select-label\" for=\"regressor-dataset_ADTTE_singleextract-select\">Column<\/label> #>                     <select data-actions-box=\"true\" data-none-selected-text=\"- Nothing selected -\" data-max-options=\"Inf\" data-show-subtext=\"true\" data-live-search=\"false\" data-state-input=\"true\" id=\"regressor-dataset_ADTTE_singleextract-select\" class=\"selectpicker form-control\" multiple=\"multiple\"><option value=\"AVAL\" selected>AVAL<\/option> #> <option value=\"BMRKR1\" selected>BMRKR1<\/option> #> <option value=\"AGE\">AGE<\/option><\/select> #>                   <\/div> #>                 <\/div> #>                 <div id=\"regressor-dataset_ADTTE_singleextract-select_fixed\" style=\"display: none;\"> #>                   <label class=\"control-label\">Column<\/label> #>                   <code id=\"regressor-dataset_ADTTE_singleextract-select_selected_text\">AVAL, BMRKR1<\/code> #>                 <\/div> #>               <\/div> #>             <\/div> #>             <div class=\"form-group shiny-input-container shinyjs-disabled shinyjs-hide\"> #>               <div class=\"checkbox\"> #>                 <label> #>                   <input id=\"regressor-dataset_ADTTE_singleextract-reshape\" type=\"checkbox\" class=\"shiny-input-checkbox\"/> #>                   <span>Reshape long to wide format<\/span> #>                 <\/label> #>               <\/div> #>             <\/div> #>           <\/div> #>         <\/div> #>       <\/div> #>     <\/div> #>   <\/div> #>   <div class=\"col-md-9\"> #>     <div class=\"well\"> #>       <div class=\"pre-output\"><\/div> #>       <div class=\"output\"> #>         <div id=\"table\" class=\"shiny-html-output\"><\/div> #>       <\/div> #>       <div class=\"post-output\"><\/div> #>     <\/div> #>   <\/div> #> <\/div>"},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_merge_module.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data merge module — data_merge_module","text":"","code":"data_merge_module(   datasets,   data_extract,   merge_function = \"dplyr::full_join\",   anl_name = \"ANL\",   id = \"merge_id\" )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_merge_module.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data merge module — data_merge_module","text":"datasets (FilteredData) object containing data, see teal.slice::FilteredData . data_extract (named list data_extract_spec) merge_function (character(1)) character string function accepts arguments x, y perform merging datasets. anl_name (character(1)) Name analysis dataset. id ID string corresponds ID used call module's UI function.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_merge_module.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data merge module — data_merge_module","text":"reactive expression output data_merge_srv().","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_merge_module.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Data merge module — data_merge_module","text":"function convenient wrapper combine data_extract_multiple_srv() data_merge_srv() additional processing required.","code":""},{"path":[]},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_merge_srv.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data merge module server — data_merge_srv","text":"","code":"data_merge_srv(   id = \"merge_id\",   selector_list,   datasets,   merge_function = \"dplyr::full_join\",   anl_name = \"ANL\" )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_merge_srv.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data merge module server — data_merge_srv","text":"id ID string corresponds ID used call module's UI function. selector_list (reactive) output data_extract_multiple_srv() reactive named list outputs data_extract_srv(). using reactive named list, names must identical shiny ids respective data_extract_ui(). datasets (FilteredData) object containing data (see teal.slice::FilteredData). merge_function (character(1) reactive) character string function accepts arguments x, y perform merging datasets. anl_name (character(1)) Name analysis dataset.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_merge_srv.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data merge module server — data_merge_srv","text":"reactive expression output merge_datasets.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/data_merge_srv.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Data merge module server — data_merge_srv","text":"additional processing data_extract list input required, data_merge_srv() combined data_extract_multiple_srv() data_extract_srv() influence selector_list input.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/datanames_input.html","id":null,"dir":"Reference","previous_headings":"","what":"Available datasets input — datanames_input","title":"Available datasets input — datanames_input","text":"Creates helpText names datasets available current module.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/datanames_input.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Available datasets input — datanames_input","text":"","code":"datanames_input(data_extracts)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/datanames_input.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Available datasets input — datanames_input","text":"data_extracts list data extracts single variable","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/extract_choices_labels.html","id":null,"dir":"Reference","previous_headings":"","what":"Extract labels from choices basing on attributes and names — extract_choices_labels","title":"Extract labels from choices basing on attributes and names — extract_choices_labels","text":"Extract labels choices basing attributes names","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/extract_choices_labels.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Extract labels from choices basing on attributes and names — extract_choices_labels","text":"","code":"extract_choices_labels(choices, values = NULL)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/extract_choices_labels.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Extract labels from choices basing on attributes and names — extract_choices_labels","text":"choices (list vector) select choices values optional, choices subset labels extracted, NULL choices","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/extract_choices_labels.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Extract labels from choices basing on attributes and names — extract_choices_labels","text":"(character) vector labels","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/filter_spec.html","id":null,"dir":"Reference","previous_headings":"","what":"Data extract filter specification — filter_spec","title":"Data extract filter specification — filter_spec","text":"consists choices additionally variable names choices","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/filter_spec.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data extract filter specification — filter_spec","text":"","code":"filter_spec(   vars,   choices = NULL,   selected = if (inherits(choices, \"delayed_data\")) NULL else choices[1],   multiple = length(selected) > 1 || inherits(selected, \"all_choices\"),   label = \"Filter by\",   sep = attr(choices, \"sep\"),   drop_keys = FALSE )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/filter_spec.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data extract filter specification — filter_spec","text":"vars (character) (delayed_data) object. Character vector giving columns filtered. key variables data set filtered. delayed_data objects can created via variable_choices(), value_choices(), choices_selected. choices (character numeric logical (delayed_data) object. Named character vector define choices shiny selectInput. choices used filter dataset. shall filter values vars input separated separator(sep). Please watch filter values follow order vars input. following example show filter two columns: vars = c(\"PARAMCD\",\"AVISIT\") choices = c(\"CRP - BASELINE\", \"ALT - BASELINE\") lead filtering (PARAMCD == \"CRP\" & AVISIT == \"BASELINE\") | (PARAMCD == \"ALT\" & AVISIT == \"BASELINE\"). sep input \" - \" case. delayed_data objects can created via variable_choices value_choices. selected (character numeric logical (delayed_data (all_choices)) object. Named character vector define selected values shiny selectInput (default values). value displayed inside shiny app upon start. all_choices object indicates selecting possible choices. multiple (logical) Whether multiple values shall allowed shiny selectInput. label optional (character). Define label top specific shiny selectInput. default value \"Filter \". sep (character) separator string split choices selected inputs values different columns drop_keys optional, (logical) whether drop filter column dataset keys, TRUE default.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/filter_spec.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data extract filter specification — filter_spec","text":"filter_spec-S3-class object delayed_filter_spec-S3-class object.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/filter_spec.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Data extract filter specification — filter_spec","text":"filter_spec used inside teal apps allow filtering datasets key variables. Imagine adverse events table. columns PARAMCD CNSR. PARAMCD contains levels \"OS\", \"PFS\", \"EFS\". CNSR contains levels \"0\" \"1\". first example show filter_spec setup influence drop-menu app user see.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/filter_spec.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Data extract filter specification — filter_spec","text":"","code":"# for Adverse Events table filter_spec(   vars = c(\"PARAMCD\", \"CNSR\"),   sep = \"-\",   choices = c(\"OS-1\" = \"OS-1\", \"OS-0\" = \"OS-0\", \"PFS-1\" = \"PFS-1\"),   selected = \"OS-1\",   multiple = FALSE,   label = \"Choose endpoint and Censor\" ) #> filter_spec with delayed data: #> $ vars_choices #> [1] \"PARAMCD\" \"CNSR\"    #> $ vars_selected #> [1] \"PARAMCD\" \"CNSR\"    #> $ vars_label #> NULL #> $ vars_fixed #> [1] TRUE #> $ vars_multiple #> [1] TRUE #> $ choices #>    OS-1    OS-0   PFS-1  #>  \"OS-1\"  \"OS-0\" \"PFS-1\"  #> $ selected #> [1] \"OS-1\" #> $ label #> [1] \"Choose endpoint and Censor\" #> $ multiple #> [1] FALSE #> $ fixed #> [1] FALSE #> $ sep #> [1] \"-\" #> $ drop_keys #> [1] FALSE #> $ dataname #> NULL #> $ initialized #> [1] FALSE  # filtering a single variable filter_spec(   vars = c(\"PARAMCD\"),   sep = \"-\",   choices = c(\"OS\", \"PFS\", \"EFS\"),   selected = \"OS\",   multiple = FALSE,   label = \"Choose endpoint\" ) #> filter_spec with delayed data: #> $ vars_choices #> [1] \"PARAMCD\" #> $ vars_selected #> [1] \"PARAMCD\" #> $ vars_label #> NULL #> $ vars_fixed #> [1] TRUE #> $ vars_multiple #> [1] TRUE #> $ choices #> [1] \"OS\"  \"PFS\" \"EFS\" #> $ selected #> [1] \"OS\" #> $ label #> [1] \"Choose endpoint\" #> $ multiple #> [1] FALSE #> $ fixed #> [1] FALSE #> $ sep #> [1] \"-\" #> $ drop_keys #> [1] FALSE #> $ dataname #> NULL #> $ initialized #> [1] FALSE  # filtering a single variable by multiple levels of the variable filter_spec(   vars = c(\"PARAMCD\"),   sep = \"-\",   choices = c(\"OS\", \"PFS\", \"EFS\"),   selected = c(\"OS\", \"PFS\"),   multiple = TRUE,   label = \"Choose endpoint\" ) #> filter_spec with delayed data: #> $ vars_choices #> [1] \"PARAMCD\" #> $ vars_selected #> [1] \"PARAMCD\" #> $ vars_label #> NULL #> $ vars_fixed #> [1] TRUE #> $ vars_multiple #> [1] TRUE #> $ choices #> [1] \"OS\"  \"PFS\" \"EFS\" #> $ selected #> [1] \"OS\"  \"PFS\" #> $ label #> [1] \"Choose endpoint\" #> $ multiple #> [1] TRUE #> $ fixed #> [1] FALSE #> $ sep #> [1] \"-\" #> $ drop_keys #> [1] FALSE #> $ dataname #> NULL #> $ initialized #> [1] FALSE  # delayed version filter_spec(   vars = variable_choices(\"ADSL\", \"SEX\"),   sep = \"-\",   choices = value_choices(\"ADSL\", \"SEX\", \"SEX\"),   selected = \"F\",   multiple = FALSE,   label = \"Choose endpoint and Censor\" ) #> filter_spec with delayed data: #> $ vars_choices #>   variable_choices with delayed data: ADSL #>   $ data #>   [1] \"ADSL\" #>   $ subset #>   [1] \"SEX\" #>   $ key #>   NULL #> $ vars_selected #>   variable_choices with delayed data: ADSL #>   $ data #>   [1] \"ADSL\" #>   $ subset #>   [1] \"SEX\" #>   $ key #>   NULL #> $ vars_label #> NULL #> $ vars_fixed #> [1] TRUE #> $ vars_multiple #> [1] TRUE #> $ choices #>   value_choices with delayed data:  ADSL #>   $ data #>   [1] \"ADSL\" #>   $ var_choices #>   [1] \"SEX\" #>   $ var_label #>   [1] \"SEX\" #>   $ subset #>   NULL #>   $ sep #>   [1] \" - \" #> $ selected #> [1] \"F\" #> $ label #> [1] \"Choose endpoint and Censor\" #> $ multiple #> [1] FALSE #> $ fixed #> [1] FALSE #> $ sep #> [1] \"-\" #> $ drop_keys #> [1] FALSE #> $ dataname #> NULL #> $ initialized #> [1] FALSE # using `choices_selected()` filter_spec(   vars = choices_selected(variable_choices(\"ADSL\", subset = c(\"SEX\", \"AGE\")), \"SEX\", fixed = FALSE),   multiple = TRUE ) #> filter_spec with delayed data: #> $ vars_choices #>   variable_choices with delayed data: ADSL #>   $ data #>   [1] \"ADSL\" #>   $ subset #>   [1] \"SEX\" \"AGE\" #>   $ key #>   NULL #> $ vars_selected #> [1] \"SEX\" #> $ vars_label #> [1] \"Filter by\" #> $ vars_fixed #> [1] FALSE #> $ vars_multiple #> [1] FALSE #> $ choices #> NULL #> $ selected #> NULL #> $ label #> NULL #> $ multiple #> [1] TRUE #> $ fixed #> [1] FALSE #> $ sep #> [1] \" - \" #> $ drop_keys #> [1] FALSE #> $ dataname #> NULL #> $ initialized #> [1] FALSE  filter_spec(   vars = choices_selected(variable_choices(\"ADSL\"), \"SEX\", fixed = TRUE),   multiple = TRUE ) #> filter_spec with delayed data: #> $ vars_choices #>   variable_choices with delayed data: ADSL #>   $ data #>   [1] \"ADSL\" #>   $ subset #>   NULL #>   $ key #>   NULL #> $ vars_selected #> [1] \"SEX\" #> $ vars_label #> NULL #> $ vars_fixed #> [1] TRUE #> $ vars_multiple #> [1] FALSE #> $ choices #> NULL #> $ selected #> NULL #> $ label #> [1] \"Filter by\" #> $ multiple #> [1] TRUE #> $ fixed #> [1] FALSE #> $ sep #> [1] \" - \" #> $ drop_keys #> [1] FALSE #> $ dataname #> NULL #> $ initialized #> [1] FALSE  # choose all choices adsl_filter <- filter_spec(   vars = choices_selected(variable_choices(\"ADSL\"), \"SEX\", fixed = FALSE),   choices = value_choices(\"ADSL\", \"SEX\"),   selected = all_choices() )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/filter_spec_internal.html","id":null,"dir":"Reference","previous_headings":"","what":"Data extract dynamic filter specification — filter_spec_internal","title":"Data extract dynamic filter specification — filter_spec_internal","text":"function returns configuration data_extract_ui module. function covers configuration filtering datasets (called filter_spec), used build UI element teal app.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/filter_spec_internal.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data extract dynamic filter specification — filter_spec_internal","text":"","code":"filter_spec_internal(   vars_choices,   vars_selected = NULL,   vars_label = NULL,   vars_fixed = FALSE,   vars_multiple = TRUE,   choices = NULL,   selected = NULL,   label = NULL,   fixed = FALSE,   multiple = TRUE,   sep = attr(vars_choices, \"sep\"),   drop_keys = FALSE,   dataname = NULL,   initialized = FALSE )  # S3 method for delayed_data filter_spec_internal(   vars_choices,   vars_selected = NULL,   vars_label = NULL,   vars_fixed = FALSE,   vars_multiple = TRUE,   choices = NULL,   selected = NULL,   label = NULL,   fixed = FALSE,   multiple = TRUE,   sep = attr(vars_choices, \"sep\"),   drop_keys = FALSE,   dataname = NULL,   initialized = FALSE )  # S3 method for default filter_spec_internal(   vars_choices,   vars_selected = NULL,   vars_label = NULL,   vars_fixed = FALSE,   vars_multiple = TRUE,   choices = NULL,   selected = NULL,   label = NULL,   fixed = FALSE,   multiple = TRUE,   sep = attr(vars_choices, \"sep\"),   drop_keys = FALSE,   dataname = NULL,   initialized = FALSE )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/filter_spec_internal.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data extract dynamic filter specification — filter_spec_internal","text":"vars_choices (character delayed_data)  vector dataset column names available build dynamic filter delayed_data objects can created via variable_choices. vars_selected (NULL named character)  selected column name choices. vars_label (character) title printed UI element generated basis filter_spec. vars_fixed (logical) true allow change selected variables UI element; otherwise, allow. vars_multiple (logical) true allow select multiple variables UI elements; otherwise, allow. choices (character numeric logical (delayed_data) object. Named character vector define choices shiny selectInput. choices used filter dataset. shall filter values vars input separated separator(sep). Please watch filter values follow order vars input. following example show filter two columns: vars = c(\"PARAMCD\",\"AVISIT\") choices = c(\"CRP - BASELINE\", \"ALT - BASELINE\") lead filtering (PARAMCD == \"CRP\" & AVISIT == \"BASELINE\") | (PARAMCD == \"ALT\" & AVISIT == \"BASELINE\"). sep input \" - \" case. delayed_data objects can created via variable_choices value_choices. selected (character numeric logical (delayed_data (all_choices)) object. Named character vector define selected values shiny selectInput (default values). value displayed inside shiny app upon start. all_choices object indicates selecting possible choices. label optional (character). Define label top specific shiny selectInput. default value \"Filter \". fixed (logical) true allow change initially selected values variables; otherwise, allow. multiple (logical) Whether multiple values shall allowed shiny selectInput. sep (character) separator string split choices selected inputs values different columns drop_keys optional, (logical) whether drop filter column dataset keys, TRUE default. dataname (character) name dataset filter covers. Set initialization teal application. initialized (logical) indicates whether filter already initialized application. TRUE filter already consumed server function; FALSE otherwise.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/filter_spec_internal.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data extract dynamic filter specification — filter_spec_internal","text":"filter_spec delayed_filter_spec S3-class object.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/filter_spec_internal.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Data extract dynamic filter specification — filter_spec_internal","text":"","code":"teal.transform:::filter_spec_internal(   vars_choices = c(\"PARAMCD\", \"AVISIT\"),   vars_selected = \"PARAMCD\",   vars_multiple = TRUE ) #> filter_spec with delayed data: #> $ vars_choices #> [1] \"PARAMCD\" \"AVISIT\"  #> $ vars_selected #> [1] \"PARAMCD\" #> $ vars_label #> NULL #> $ vars_fixed #> [1] FALSE #> $ vars_multiple #> [1] TRUE #> $ choices #> NULL #> $ selected #> NULL #> $ label #> NULL #> $ multiple #> [1] TRUE #> $ fixed #> [1] FALSE #> $ sep #> [1] \" - \" #> $ drop_keys #> [1] FALSE #> $ dataname #> NULL #> $ initialized #> [1] FALSE  ADRS <- teal.transform::rADRS teal.transform:::filter_spec_internal(   vars_choices = variable_choices(ADRS),   vars_selected = \"PARAMCD\",   vars_multiple = TRUE ) #> filter_spec with delayed data: #> $ vars_choices #> number of choices: 65  #>  #> STUDYID: Study Identifier #> USUBJID: Unique Subject Identifier #> SUBJID: Subject Identifier for the Study #> SITEID: Study Site Identifier #> AGE: Age #> AGEU: Age Units #> SEX: Sex #> RACE: Race #> ETHNIC: Ethnicity #> COUNTRY: Country #> DTHFL: Subject Death Flag #> INVID: Investigator Identifier #> INVNAM: Investigator Name #> ARM: Description of Planned Arm #> ARMCD: Planned Arm Code #> ACTARM: Description of Actual Arm #> ACTARMCD: Actual Arm Code #> TRT01P: Planned Treatment for Period 01 #> TRT01A: Actual Treatment for Period 01 #> TRT02P: Planned Treatment for Period 02 #> TRT02A: Actual Treatment for Period 02 #> REGION1: Geographic Region 1 #> STRATA1: Stratification Factor 1 #> STRATA2: Stratification Factor 2 #> BMRKR1: Continuous Level Biomarker 1 #> BMRKR2: Categorical Level Biomarker 2 #> ITTFL: Intent-To-Treat Population Flag #> SAFFL: Safety Population Flag #> BMEASIFL: Response Evaluable Population Flag #> BEP01FL: Biomarker Evaluable Population Flag #> AEWITHFL: AE Leading to Drug Withdrawal Flag #> RANDDT: Date of Randomization #> TRTSDTM: Datetime of First Exposure to Treatment #> TRTEDTM: Datetime of Last Exposure to Treatment #> TRT01SDTM: Datetime of First Exposure to Treatment in Period 01 #> TRT01EDTM: Datetime of Last Exposure in Period 01 #> TRT02SDTM: Datetime of First Exposure to Treatment in Period 02 #> TRT02EDTM: Datetime of Last Exposure to Treatment in Period 02 #> AP01SDTM: Period 01 Start Datetime #> AP01EDTM: Period 01 End Datetime #> AP02SDTM: Period 02 Start Datetime #> AP02EDTM: Period 02 End Datetime #> EOSSTT: End of Study Status #> EOTSTT: End of Treatment Status #> EOSDT: End of Study Date #> EOSDY: End of Study Relative Day #> DCSREAS: Reason for Discontinuation from Study #> DTHDT: Date of Death #> DTHCAUS: Cause of Death #> DTHCAT: Cause of Death Category #> LDDTHELD: Elapsed Days from Last Dose to Death #> LDDTHGR1: Last Dose to Death - Days Elapsed Grp 1 #> LSTALVDT: Date Last Known Alive #> DTHADY: Relative Day of Death #> ADTHAUT: Autopsy Performed #> ASEQ: Analysis Sequence Number #> RSSEQ: Sequence Number #> PARAM: Parameter #> PARAMCD: Parameter Code #> AVAL: Analysis Value #> AVALC: Analysis Value (C) #> ADTM: Analysis Datetime #> ADY: Analysis Relative Day #> AVISIT: Analysis Visit #> AVISITN: Analysis Visit (N) #>  #> $ vars_selected #> [1] \"PARAMCD\" #> $ vars_label #> NULL #> $ vars_fixed #> [1] FALSE #> $ vars_multiple #> [1] TRUE #> $ choices #> NULL #> $ selected #> NULL #> $ label #> NULL #> $ multiple #> [1] TRUE #> $ fixed #> [1] FALSE #> $ sep #> [1] \" - \" #> $ drop_keys #> [1] FALSE #> $ dataname #> NULL #> $ initialized #> [1] FALSE  teal.transform:::filter_spec_internal(   vars_choices = variable_choices(\"ADRS\"),   vars_selected = \"PARAMCD\",   vars_multiple = TRUE ) #> filter_spec with delayed data: #> $ vars_choices #>   variable_choices with delayed data: ADRS #>   $ data #>   [1] \"ADRS\" #>   $ subset #>   NULL #>   $ key #>   NULL #> $ vars_selected #> [1] \"PARAMCD\" #> $ vars_label #> NULL #> $ vars_fixed #> [1] FALSE #> $ vars_multiple #> [1] TRUE #> $ choices #> NULL #> $ selected #> NULL #> $ label #> NULL #> $ multiple #> [1] TRUE #> $ fixed #> [1] FALSE #> $ sep #> [1] \" - \" #> $ drop_keys #> [1] FALSE #> $ dataname #> NULL #> $ initialized #> [1] FALSE"},{"path":"https://insightsengineering.github.io/teal.transform/reference/format_data_extract.html","id":null,"dir":"Reference","previous_headings":"","what":"Formatting data extracts — format_data_extract","title":"Formatting data extracts — format_data_extract","text":"Returns human-readable string representation extracted data_extract_spec object.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/format_data_extract.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Formatting data extracts — format_data_extract","text":"","code":"format_data_extract(data_extract)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/format_data_extract.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Formatting data extracts — format_data_extract","text":"data_extract list list output data_extract_srv","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/format_data_extract.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Formatting data extracts — format_data_extract","text":"character(1) string representation","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/format_data_extract.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Formatting data extracts — format_data_extract","text":"function formats output data_extract_srv. See example information.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/format_data_extract.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Formatting data extracts — format_data_extract","text":"","code":"simple_des <- data_extract_spec(   dataname = \"iris\",   filter = filter_spec(vars = \"Petal.Length\", choices = c(\"1.4\", \"1.5\")),   select = select_spec(choices = c(\"Petal.Length\", \"Species\")) )  sample_filtered_data <- {   teal.slice::init_filtered_data(     list(iris = list(dataset = iris))   ) }  if (interactive()) {   shiny::shinyApp(     ui = shiny::fluidPage(       data_extract_ui(         id = \"extract\",         label = \"data extract ui\",         data_extract_spec = simple_des,         is_single_dataset = TRUE       ),       shiny::verbatimTextOutput(\"formatted_extract\")     ),     server = function(input, output, session) {       extracted_input <- data_extract_srv(         id = \"extract\",         datasets = sample_filtered_data,         data_extract_spec = simple_des       )       output$formatted_extract <- shiny::renderPrint({         cat(format_data_extract(extracted_input()))       })     }   ) }"},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_anl_relabel_call.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Gets the relabel call — get_anl_relabel_call","text":"","code":"get_anl_relabel_call(columns_source, datasets, anl_name = \"ANL\")"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_anl_relabel_call.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Gets the relabel call — get_anl_relabel_call","text":"columns_source named list names column names, values labels + additional attribute dataname datasets (named list reactive non-reactive data.frame) object containing data list data.frame. passing list non-reactive data.frame objects, converted reactive data.frame objects internally. anl_name (character(1)) Name analysis dataset.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_anl_relabel_call.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Gets the relabel call — get_anl_relabel_call","text":"(call) relabel dataset assign anl_name.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dataset_prefixed_col_names.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Returns non-key column names from data — get_dataset_prefixed_col_names","text":"","code":"get_dataset_prefixed_col_names(data)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dataset_prefixed_col_names.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Returns non-key column names from data — get_dataset_prefixed_col_names","text":"data (data.frame) Data attribute filter_and_columns. can created data_extract_srv. returns shiny reactive.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dataset_prefixed_col_names.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Returns non-key column names from data — get_dataset_prefixed_col_names","text":"named character vector non-key columns data..","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dataset_prefixed_col_names.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Returns non-key column names from data — get_dataset_prefixed_col_names","text":"data_extract_srv","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dplyr_call.html","id":null,"dir":"Reference","previous_headings":"","what":"Parses filter, select, rename and reshape call — get_dplyr_call","title":"Parses filter, select, rename and reshape call — get_dplyr_call","text":"Parse filter, select, rename reshape call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dplyr_call.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Parses filter, select, rename and reshape call — get_dplyr_call","text":"","code":"get_dplyr_call(   selector_list,   idx = 1L,   join_keys = teal.data::join_keys(),   dplyr_call_data = get_dplyr_call_data(selector_list, join_keys = join_keys),   datasets = NULL )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dplyr_call.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Parses filter, select, rename and reshape call — get_dplyr_call","text":"selector_list (reactive) output data_extract_multiple_srv() reactive named list outputs data_extract_srv(). using reactive named list, names must identical shiny ids respective data_extract_ui(). idx optional (integer) current selector index selectors list join_keys (join_keys) nested list keys used joining dplyr_call_data (list) simplified selectors aggregated set filters, selections, reshapes etc. necessary data merging data (NULL named list).","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dplyr_call.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Parses filter, select, rename and reshape call — get_dplyr_call","text":"(call) filter, select, rename reshape call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dplyr_call.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Parses filter, select, rename and reshape call — get_dplyr_call","text":"","code":"# one dataset teal.transform:::get_dplyr_call(   list(list(     dataname = \"ADSL\",     filters = NULL,     select = character(0),     keys = teal.data::get_cdisc_keys(\"ADSL\"),     reshape = FALSE,     internal_id = \"test1\"   )) ) #> ADSL teal.transform:::get_dplyr_call(   list(list(     dataname = \"ADSL\",     filters = list(list(columns = \"SEX\", selected = list(\"F\", \"M\"))),     select = character(0),     keys = teal.data::get_cdisc_keys(\"ADSL\"),     reshape = FALSE,     internal_id = \"test1\"   )) ) #> ADSL %>% dplyr::filter(SEX %in% c(\"F\", \"M\")) teal.transform:::get_dplyr_call(   list(list(     dataname = \"ADSL\",     filters = list(list(columns = \"SEX\", selected = list(\"F\", \"M\"))),     select = c(\"AVAL\"),     keys = teal.data::get_cdisc_keys(\"ADSL\"),     reshape = FALSE,     internal_id = \"test1\"   )) ) #> ADSL %>% dplyr::filter(SEX %in% c(\"F\", \"M\")) %>% dplyr::select(AVAL)  # two datasets with rename part teal.transform:::get_dplyr_call(   list(     list(       dataname = \"ADSL\",       filters = NULL,       select = c(\"COL_1\", \"COL_2\"),       keys = teal.data::get_cdisc_keys(\"ADSL\"),       reshape = FALSE,       internal_id = \"test1\"     ),     list(       dataname = \"ADSL\",       filters = NULL,       select = c(\"COL_2\", \"COL_3\"),       keys = teal.data::get_cdisc_keys(\"ADSL\"),       reshape = FALSE,       internal_id = \"test2\"     )   ),   idx = 1L ) #> ADSL %>% dplyr::select(COL_1, COL_2) %>% dplyr::rename(test1.COL_2 = COL_2)  # long dataset with reshape part teal.transform:::get_dplyr_call(   list(list(     dataname = \"ADLB\",     filters = list(list(       columns = c(\"PARAMCD\", \"AVISIT\"),       selected = list(c(\"ALBCV\", \"SCREENING\"), c(\"ALBCV\", \"BASELINE\"))     )),     select = c(\"AVAL\"),     keys = teal.data::get_cdisc_keys(\"ADLB\"),     reshape = TRUE,     internal_id = \"test1\"   )) ) #> ADLB %>% dplyr::filter((PARAMCD == \"ALBCV\" & AVISIT == \"SCREENING\") |  #>     (PARAMCD == \"ALBCV\" & AVISIT == \"BASELINE\")) %>% dplyr::select(PARAMCD,  #>     AVISIT, AVAL) %>% tidyr::pivot_longer(cols = \"AVAL\", names_to = \"MEASURE\",  #>     values_to = \"VALUE\") %>% tidyr::unite(KEY, MEASURE, PARAMCD,  #>     AVISIT) %>% tidyr::pivot_wider(names_from = \"KEY\", values_from = \"VALUE\")"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dplyr_call_data.html","id":null,"dir":"Reference","previous_headings":"","what":"Aggregates data extract selectors — get_dplyr_call_data","title":"Aggregates data extract selectors — get_dplyr_call_data","text":"Simplifies selector_list aggregated list one element per selector - dataset, filter configuration reshape status","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dplyr_call_data.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Aggregates data extract selectors — get_dplyr_call_data","text":"","code":"get_dplyr_call_data(selector_list, join_keys = teal.data::join_keys())"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dplyr_call_data.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Aggregates data extract selectors — get_dplyr_call_data","text":"selector_list (reactive) output data_extract_multiple_srv() reactive named list outputs data_extract_srv(). using reactive named list, names must identical shiny ids respective data_extract_ui(). join_keys (join_keys) nested list keys used joining","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dplyr_call_data.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Aggregates data extract selectors — get_dplyr_call_data","text":"(list) simplified selectors aggregated set filters, selections, reshapes etc. necessary data merging","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dropped_filters.html","id":null,"dir":"Reference","previous_headings":"","what":"Names of filtered-out filters dropped from selection — get_dropped_filters","title":"Names of filtered-out filters dropped from selection — get_dropped_filters","text":"Names filtered-filters dropped selection","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dropped_filters.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Names of filtered-out filters dropped from selection — get_dropped_filters","text":"","code":"get_dropped_filters(selector)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dropped_filters.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Names of filtered-out filters dropped from selection — get_dropped_filters","text":"selector one element selector_list obtained get_dplyr_call_data.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dropped_filters.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Names of filtered-out filters dropped from selection — get_dropped_filters","text":"names character filters dropped select call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_dropped_filters.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Names of filtered-out filters dropped from selection — get_dropped_filters","text":"Names filtered-filters dropped automatic selection (key vars automatically included select). Dropped filter filter became unique observations. means variable filtered just one level, key anymore. variables used filter also dropped automatic selection, unless selected.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_extract_datanames.html","id":null,"dir":"Reference","previous_headings":"","what":"Gets names of the datasets from a list of data_extract_spec objects — get_extract_datanames","title":"Gets names of the datasets from a list of data_extract_spec objects — get_extract_datanames","text":"Fetches dataname slot per data_extract_spec list data_extract_spec returns unique dataname set.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_extract_datanames.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Gets names of the datasets from a list of data_extract_spec objects — get_extract_datanames","text":"","code":"get_extract_datanames(data_extracts)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_extract_datanames.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Gets names of the datasets from a list of data_extract_spec objects — get_extract_datanames","text":"data_extracts single data_extract_spec object list (lists) data_extract_spec","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_filter_call.html","id":null,"dir":"Reference","previous_headings":"","what":"Returns dplyr filter call — get_filter_call","title":"Returns dplyr filter call — get_filter_call","text":"Returns dplyr filter call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_filter_call.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Returns dplyr filter call — get_filter_call","text":"","code":"get_filter_call(filter, dataname = NULL, datasets = NULL)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_filter_call.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Returns dplyr filter call — get_filter_call","text":"filter (list) Either list lists list select selected items. dataname (NULL character) name dataset. datasets (NULL named `list`).","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_filter_call.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Returns dplyr filter call — get_filter_call","text":"(call) dplyr filter call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_filter_call.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Returns dplyr filter call — get_filter_call","text":"","code":"teal.transform:::get_filter_call(   filter = list(list(columns = \"SEX\", selected = list(NA, \"F\", \"M\"))) ) #> dplyr::filter(SEX %in% c(NA_character_, \"F\", \"M\")) teal.transform:::get_filter_call(filter = list(   list(columns = \"SEX\", selected = list(NA, \"F\", \"M\")),   list(columns = \"VAR\", selected = list(\"LEVEL1\", \"LEVEL2\")) )) #> dplyr::filter(SEX %in% c(NA_character_, \"F\", \"M\") & VAR %in%  #>     c(\"LEVEL1\", \"LEVEL2\"))"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_initial_filter_values.html","id":null,"dir":"Reference","previous_headings":"","what":"Returns the initial values for the vals widget\nof a filter_spec object. — get_initial_filter_values","title":"Returns the initial values for the vals widget\nof a filter_spec object. — get_initial_filter_values","text":"Returns initial values vals widget filter_spec object.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_initial_filter_values.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Returns the initial values for the vals widget\nof a filter_spec object. — get_initial_filter_values","text":"","code":"get_initial_filter_values(filter, datasets)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_initial_filter_values.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Returns the initial values for the vals widget\nof a filter_spec object. — get_initial_filter_values","text":"filter (filter_spec) filter generated call filter_spec() datasets (named list) list reactive data.frame type objects.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_initial_filter_values.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Returns the initial values for the vals widget\nof a filter_spec object. — get_initial_filter_values","text":"named list two slots choices selected","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_initial_filter_values.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Returns the initial values for the vals widget\nof a filter_spec object. — get_initial_filter_values","text":"","code":"filtered_data_list <- list(iris = shiny::reactive(utils::head(iris))) filter <- filter_spec(vars = colnames(iris)[1]) filter$dataname <- \"iris\" shiny::isolate(   teal.transform:::get_initial_filter_values(filter = filter, datasets = filtered_data_list) ) #> $choices #> number of choices: 6  #>  #> 5.1:  #> 4.9:  #> 4.7:  #> 4.6:  #> 5:  #> 5.4:  #>  #>"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_call.html","id":null,"dir":"Reference","previous_headings":"","what":"Get merge call from a list of selectors — get_merge_call","title":"Get merge call from a list of selectors — get_merge_call","text":"Returns list calls depending selector(s) type merge Order merge selectors passed function.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_call.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get merge call from a list of selectors — get_merge_call","text":"","code":"get_merge_call(   selector_list,   join_keys = teal.data::join_keys(),   dplyr_call_data = get_dplyr_call_data(selector_list, join_keys = join_keys),   merge_function = \"dplyr::full_join\",   anl_name = \"ANL\" )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_call.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get merge call from a list of selectors — get_merge_call","text":"selector_list (reactive) output data_extract_multiple_srv() reactive named list outputs data_extract_srv(). using reactive named list, names must identical shiny ids respective data_extract_ui(). join_keys (join_keys) nested list keys used joining dplyr_call_data (list) simplified selectors aggregated set filters, merge_function (character(1) reactive) character string function accepts arguments x, y perform merging datasets. anl_name (character(1)) Name analysis dataset.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_call.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get merge call from a list of selectors — get_merge_call","text":"(list call elements)","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_key_grid.html","id":null,"dir":"Reference","previous_headings":"","what":"Gets keys list from keys list — get_merge_key_grid","title":"Gets keys list from keys list — get_merge_key_grid","text":"Gets keys list keys list","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_key_grid.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Gets keys list from keys list — get_merge_key_grid","text":"","code":"get_merge_key_grid(selector_list, join_keys = teal.data::join_keys())"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_key_grid.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Gets keys list from keys list — get_merge_key_grid","text":"selector_list (reactive) output data_extract_multiple_srv() reactive named list outputs data_extract_srv(). using reactive named list, names must identical shiny ids respective data_extract_ui(). join_keys (join_keys) nested list keys used joining","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_key_grid.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Gets keys list from keys list — get_merge_key_grid","text":"list key pairs datasets","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_key_i.html","id":null,"dir":"Reference","previous_headings":"","what":"Gets keys needed for join call of two selectors — get_merge_key_i","title":"Gets keys needed for join call of two selectors — get_merge_key_i","text":"Gets keys needed join call two selectors","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_key_i.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Gets keys needed for join call of two selectors — get_merge_key_i","text":"","code":"get_merge_key_i(   selector_list,   idx,   dplyr_call_data = get_dplyr_call_data(selector_list) )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_key_i.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Gets keys needed for join call of two selectors — get_merge_key_i","text":"selector_list (reactive) output data_extract_multiple_srv() reactive named list outputs data_extract_srv(). using reactive named list, names must identical shiny ids respective data_extract_ui(). idx optional (integer) current selector index selectors list dplyr_call_data (list) simplified selectors aggregated set filters,","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_key_i.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Gets keys needed for join call of two selectors — get_merge_key_i","text":"(call)","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_key_pair.html","id":null,"dir":"Reference","previous_headings":"","what":"Gets keys vector from keys list — get_merge_key_pair","title":"Gets keys vector from keys list — get_merge_key_pair","text":"Gets keys vector keys list","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_key_pair.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Gets keys vector from keys list — get_merge_key_pair","text":"","code":"get_merge_key_pair(selector_from, selector_to, key_from)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_key_pair.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Gets keys vector from keys list — get_merge_key_pair","text":"selector_from (list) data_extract_srv selector_to (list) data_extract_srv key_from (character) keys used first selector joining","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_key_pair.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Gets keys vector from keys list — get_merge_key_pair","text":"(character)","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_merge_key_pair.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Gets keys vector from keys list — get_merge_key_pair","text":"function covers now 4 cases dataset without parent  Primary keys returned dataset source = dataset target primary keys subtracted key columns get purely filtered. means just one value left filtering inside column. can taken . target dataname parent  foreign keys case foreign keys","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_pivot_longer_col.html","id":null,"dir":"Reference","previous_headings":"","what":"Get pivot longer  columns — get_pivot_longer_col","title":"Get pivot longer  columns — get_pivot_longer_col","text":"Get values names spread columns.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_pivot_longer_col.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get pivot longer  columns — get_pivot_longer_col","text":"","code":"get_pivot_longer_col(selector)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_pivot_longer_col.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get pivot longer  columns — get_pivot_longer_col","text":"selector one element selector_list obtained get_dplyr_call_data.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_relabel_call.html","id":null,"dir":"Reference","previous_headings":"","what":"Create relabel call from named character — get_relabel_call","title":"Create relabel call from named character — get_relabel_call","text":"Function creates relabel call named character.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_relabel_call.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create relabel call from named character — get_relabel_call","text":"","code":"get_relabel_call(labels)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_relabel_call.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create relabel call from named character — get_relabel_call","text":"labels (named character) name name function argument name value function argument value.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_relabel_call.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create relabel call from named character — get_relabel_call","text":"(call) object relabel step","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_relabel_call.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create relabel call from named character — get_relabel_call","text":"","code":"get_relabel_call(   labels = c(     x = as.name(\"ANL\"),     AGE = \"Age\",     AVAL = \"Continuous variable\"   ) ) #> teal.data::col_relabel(x = ANL, AGE = \"Age\", AVAL = \"Continuous variable\")  get_relabel_call(   labels = c(     AGE = \"Age\",     AVAL = \"Continuous variable\"   ) ) #> teal.data::col_relabel(AGE = \"Age\", AVAL = \"Continuous variable\")"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_relabel_cols.html","id":null,"dir":"Reference","previous_headings":"","what":"Get columns to relabel — get_relabel_cols","title":"Get columns to relabel — get_relabel_cols","text":"Get columns relabel excluding reshaped (pivot_wider)","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_relabel_cols.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get columns to relabel — get_relabel_cols","text":"","code":"get_relabel_cols(columns_source, dplyr_call_data)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_relabel_cols.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get columns to relabel — get_relabel_cols","text":"columns_source list dplyr_call_data list","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_relabel_cols.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get columns to relabel — get_relabel_cols","text":"columns_source list without columns reshaped","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_rename_call.html","id":null,"dir":"Reference","previous_headings":"","what":"Returns dplyr rename call — get_rename_call","title":"Returns dplyr rename call — get_rename_call","text":"Rename used duplicated columns","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_rename_call.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Returns dplyr rename call — get_rename_call","text":"","code":"get_rename_call(   selector_list = list(),   idx = 1L,   join_keys = teal.data::join_keys(),   dplyr_call_data = get_dplyr_call_data(selector_list, join_keys = join_keys) )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_rename_call.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Returns dplyr rename call — get_rename_call","text":"selector_list (reactive) output data_extract_multiple_srv() reactive named list outputs data_extract_srv(). using reactive named list, names must identical shiny ids respective data_extract_ui(). idx optional (integer) current selector index selectors list join_keys (join_keys) nested list keys used joining dplyr_call_data (list) simplified selectors aggregated set filters, selections, reshapes etc. necessary data merging","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_rename_call.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Returns dplyr rename call — get_rename_call","text":"(call) dplyr rename call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_rename_call.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Returns dplyr rename call — get_rename_call","text":"get_rename_dict","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_rename_call.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Returns dplyr rename call — get_rename_call","text":"","code":"x <- list(   list(     dataname = \"ADSL\",     filters = NULL,     select = utils::head(letters, 3),     keys = teal.data::get_cdisc_keys(\"ADSL\"),     reshape = FALSE,     internal_id = \"test1\"   ),   list(     dataname = \"ADSL\",     filters = NULL,     select = letters,     keys = teal.data::get_cdisc_keys(\"ADSL\"),     reshape = FALSE,     internal_id = \"test2\"   ),   list(     dataname = \"ADSL\",     filters = NULL,     select = utils::tail(letters, 3),     keys = teal.data::get_cdisc_keys(\"ADSL\"),     reshape = FALSE,     internal_id = \"test3\"   ),   list(     dataname = \"ADSL\",     filters = NULL,     select = c(\"aa\", \"bb\"),     keys = teal.data::get_cdisc_keys(\"ADSL\"),     reshape = FALSE,     internal_id = \"test4\"   ) ) teal.transform:::get_rename_call(x, 1L) #> dplyr::rename(test1.a = a, test1.b = b, test1.c = c) teal.transform:::get_rename_call(x, 2L) #> dplyr::rename(test2.a = a, test2.b = b, test2.c = c, test2.x = x,  #>     test2.y = y, test2.z = z) teal.transform:::get_rename_call(x, 3L) #> dplyr::rename(test3.x = x, test3.y = y, test3.z = z) teal.transform:::get_rename_call(x, 4L) #> NULL"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_reshape_call.html","id":null,"dir":"Reference","previous_headings":"","what":"Returns dplyr reshape call — get_reshape_call","title":"Returns dplyr reshape call — get_reshape_call","text":"Returns dplyr reshape call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_reshape_call.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Returns dplyr reshape call — get_reshape_call","text":"","code":"get_reshape_call(   selector_list = list(),   idx = 1L,   join_keys = teal.data::join_keys(),   dplyr_call_data = get_dplyr_call_data(selector_list, join_keys = join_keys) )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_reshape_call.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Returns dplyr reshape call — get_reshape_call","text":"selector_list (reactive) output data_extract_multiple_srv() reactive named list outputs data_extract_srv(). using reactive named list, names must identical shiny ids respective data_extract_ui(). idx optional (integer) current selector index selectors list join_keys (join_keys) nested list keys used joining dplyr_call_data (list) simplified selectors aggregated set filters, selections, reshapes etc. necessary data merging","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_reshape_call.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Returns dplyr reshape call — get_reshape_call","text":"(list) list multiple dplyr calls reshape data","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_reshape_call.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Returns dplyr reshape call — get_reshape_call","text":"","code":"filters <- list(   columns = c(\"PARAMCD\", \"AVISIT\"),   selected = list(c(\"ALT\", \"SCREENING\"), c(\"ALT\", \"BASELINE\")) ) select <- \"AVAL\" internal_id <- \"ADLB\"  x <- list(   list(     dataname = \"ADLB\",     filters = list(list(       columns = c(\"PARAMCD\", \"AVISIT\"),       selected = list(c(\"ALBCV\", \"SCREENING\"), c(\"ALBCV\", \"BASELINE\")),       multiple = FALSE     )),     select = \"AVAL\",     keys = teal.data::get_cdisc_keys(\"ADLB\"),     reshape = TRUE,     internal_id = \"test\"   ) ) teal.transform:::get_reshape_call(x, 1L) #> [[1]] #> tidyr::pivot_longer(cols = \"AVAL\", names_to = \"MEASURE\", values_to = \"VALUE\") #>  #> [[2]] #> tidyr::unite(KEY, MEASURE, PARAMCD, AVISIT) #>  #> [[3]] #> tidyr::pivot_wider(names_from = \"KEY\", values_from = \"VALUE\") #>"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_reshape_unite_col.html","id":null,"dir":"Reference","previous_headings":"","what":"Get unite columns — get_reshape_unite_col","title":"Get unite columns — get_reshape_unite_col","text":"Get key names spreads values columns. Reshape done keys filter_spec.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_reshape_unite_col.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get unite columns — get_reshape_unite_col","text":"","code":"get_reshape_unite_col(selector)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_reshape_unite_col.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get unite columns — get_reshape_unite_col","text":"selector one element selector_list obtained get_dplyr_call_data.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_reshape_unite_vals.html","id":null,"dir":"Reference","previous_headings":"","what":"Get unite columns values — get_reshape_unite_vals","title":"Get unite columns values — get_reshape_unite_vals","text":"Get key values (levels) unite columns.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_reshape_unite_vals.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get unite columns values — get_reshape_unite_vals","text":"","code":"get_reshape_unite_vals(selector)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_reshape_unite_vals.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get unite columns values — get_reshape_unite_vals","text":"selector one element selector_list obtained get_dplyr_call_data.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_select_call.html","id":null,"dir":"Reference","previous_headings":"","what":"Parse dplyr select call — get_select_call","title":"Parse dplyr select call — get_select_call","text":"Parse dplyr select call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_select_call.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Parse dplyr select call — get_select_call","text":"","code":"get_select_call(select)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_select_call.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Parse dplyr select call — get_select_call","text":"select (character) vector selected column names","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_select_call.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Parse dplyr select call — get_select_call","text":"(call) dplyr select call","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/get_select_call.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Parse dplyr select call — get_select_call","text":"","code":"teal.transform:::get_select_call(letters) #> dplyr::select(a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p,  #>     q, r, s, t, u, v, w, x, y, z)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/include_css_files.html","id":null,"dir":"Reference","previous_headings":"","what":"Include CSS files from /inst/css/ package directory to application header — include_css_files","title":"Include CSS files from /inst/css/ package directory to application header — include_css_files","text":"system.file used access files packages, work devtools. Therefore, redefine method package needed. Thus, export method","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/include_css_files.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Include CSS files from /inst/css/ package directory to application header — include_css_files","text":"","code":"include_css_files(pattern = \"*\")"},{"path":"https://insightsengineering.github.io/teal.transform/reference/include_css_files.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Include CSS files from /inst/css/ package directory to application header — include_css_files","text":"pattern (character) pattern files included","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/include_css_files.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Include CSS files from /inst/css/ package directory to application header — include_css_files","text":"HTML code includes CSS files","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/is_single_dataset.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Checks if the input data_extract_spec objects all come from the same dataset — is_single_dataset","text":"","code":"is_single_dataset(...)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/is_single_dataset.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Checks if the input data_extract_spec objects all come from the same dataset — is_single_dataset","text":"... either data_extract_spec objects lists data_extract_spec objects contain NULL","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/is_single_dataset.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Checks if the input data_extract_spec objects all come from the same dataset — is_single_dataset","text":"logical","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/list_extract_spec.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Make sure that the extract spec has list form — list_extract_spec","text":"","code":"list_extract_spec(x, allow_null = FALSE)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/list_extract_spec.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Make sure that the extract spec has list form — list_extract_spec","text":"x data_extract_spec single data_extract_spec list allow_null logical whether x can NULL","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/list_extract_spec.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Make sure that the extract spec has list form — list_extract_spec","text":"x list already","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_datasets.html","id":null,"dir":"Reference","previous_headings":"","what":"Merge the datasets on the keys — merge_datasets","title":"Merge the datasets on the keys — merge_datasets","text":"combines/merges multiple datasets specified keys attribute.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_datasets.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Merge the datasets on the keys — merge_datasets","text":"","code":"merge_datasets(   selector_list,   datasets,   join_keys,   merge_function = \"dplyr::full_join\",   anl_name = \"ANL\" )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_datasets.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Merge the datasets on the keys — merge_datasets","text":"selector_list (reactive) output data_extract_multiple_srv() reactive named list outputs data_extract_srv(). using reactive named list, names must identical shiny ids respective data_extract_ui(). datasets (named list reactive non-reactive data.frame) object containing data list data.frame. passing list non-reactive data.frame objects, converted reactive data.frame objects internally. join_keys (join_keys) variables used join keys datasets datasets. used extract keys every dataset. merge_function (character(1) reactive) character string function accepts arguments x, y perform merging datasets. anl_name (character(1)) Name analysis dataset.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_datasets.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Merge the datasets on the keys — merge_datasets","text":"merged_dataset (list) containing: expr (list call) code needed replicate merged dataset. columns_source (list) column names selected particular selector. list element contains named character vector : Values names columns ANL. case column name selected one selector gets prefixed id selector. example two data_extract id x, y, duplicated selected variable (example AGE) prefixed x.AGE y.AGE. Names vector denote names variables input dataset. attr(,\"dataname\") indicate dataset variable merged . attr(, \"always selected\") denote names variables need always selected. keys (list) keys merged dataset. filter_info (list) information given user. information defines filters applied data. Additionally defines variables selected data sets.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_datasets.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Merge the datasets on the keys — merge_datasets","text":"Internally function uses calls allow reproducibility.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_datasets.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Merge the datasets on the keys — merge_datasets","text":"","code":"if (FALSE) { # inside teal module server function response <- data_extract_srv(   id = \"reponse\",   data_extract_spec = response_spec,   datasets = datasets ) regressor <- data_extract_srv(   id = \"regressor\",   data_extract_spec = regressor_spec,   datasets = datasets ) merged_data <- merge_datasets(list(regressor(), response())) }"},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_expression_module.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Merge expression module — merge_expression_module","text":"","code":"merge_expression_module(   datasets,   join_keys = NULL,   data_extract,   merge_function = \"dplyr::full_join\",   anl_name = \"ANL\",   id = \"merge_id\" )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_expression_module.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Merge expression module — merge_expression_module","text":"datasets (named list reactive non-reactive data.frame) object containing data list data.frame. passing list non-reactive data.frame objects, converted reactive data.frame objects internally. join_keys (join_keys) variables used join keys datasets datasets. used extract keys every dataset. data_extract (named list data_extract_spec) merge_function (character(1)) character string function accepts arguments x, y perform merging datasets. anl_name (character(1)) Name analysis dataset. id ID string corresponds ID used call module's UI function.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_expression_module.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Merge expression module — merge_expression_module","text":"reactive expression output merge_expression_srv().","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_expression_module.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Merge expression module — merge_expression_module","text":"function convenient wrapper combine data_extract_multiple_srv() merge_expression_srv() additional processing required. Compare example found merge_expression_srv().","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_expression_module.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Merge expression module — merge_expression_module","text":"","code":"library(shiny) ADSL <- data.frame(   STUDYID = \"A\",   USUBJID = LETTERS[1:10],   SEX = rep(c(\"F\", \"M\"), 5),   AGE = rpois(10, 30),   BMRKR1 = rlnorm(10) ) ADLB <- expand.grid(   STUDYID = \"A\",   USUBJID = LETTERS[1:10],   PARAMCD = c(\"ALT\", \"CRP\", \"IGA\"),   AVISIT = c(\"SCREENING\", \"BASELINE\", \"WEEK 1 DAY 8\", \"WEEK 2 DAY 15\") ) ADLB$AVAL <- rlnorm(120) ADLB$CHG <- rnorm(120)  data_list <- list(   ADSL = ADSL,   ADLB = ADLB )  join_keys <- teal.data::join_keys(   teal.data::join_key(\"ADSL\", \"ADSL\", c(\"STUDYID\", \"USUBJID\")),   teal.data::join_key(\"ADSL\", \"ADLB\", c(\"STUDYID\", \"USUBJID\")),   teal.data::join_key(\"ADLB\", \"ADLB\", c(\"STUDYID\", \"USUBJID\", \"PARAMCD\", \"AVISIT\")) )   adsl_extract <- data_extract_spec(   dataname = \"ADSL\",   select = select_spec(     label = \"Select variable:\",     choices = c(\"AGE\", \"BMRKR1\"),     selected = \"AGE\",     multiple = TRUE,     fixed = FALSE   ) ) adlb_extract <- data_extract_spec(   dataname = \"ADLB\",   filter = filter_spec(vars = \"PARAMCD\", choices = c(\"ALT\", \"CRP\", \"IGA\"), selected = \"ALT\"),   select = select_spec(     label = \"Select variable:\",     choices = c(\"AVAL\", \"CHG\"),     selected = \"AVAL\",     multiple = TRUE,     fixed = FALSE   ) ) app <- shinyApp(   ui = fluidPage(     teal.widgets::standard_layout(       output = div(         verbatimTextOutput(\"expr\"),         dataTableOutput(\"data\")       ),       encoding = tagList(         data_extract_ui(\"adsl_var\", label = \"ADSL selection\", adsl_extract),         data_extract_ui(\"adlb_var\", label = \"ADLB selection\", adlb_extract)       )     )   ),   server = function(input, output, session) {     data_q <- teal.code::new_qenv()      data_q <- teal.code::eval_code(       data_q,       \"ADSL <- data.frame(         STUDYID = 'A',         USUBJID = LETTERS[1:10],         SEX = rep(c('F', 'M'), 5),         AGE = rpois(10, 30),         BMRKR1 = rlnorm(10)       )\"     )      data_q <- teal.code::eval_code(       data_q,       \"ADLB <- expand.grid(         STUDYID = 'A',         USUBJID = LETTERS[1:10],         PARAMCD = c('ALT', 'CRP', 'IGA'),         AVISIT = c('SCREENING', 'BASELINE', 'WEEK 1 DAY 8', 'WEEK 2 DAY 15'),         AVAL = rlnorm(120),         CHG = rlnorm(120)        )\"     )      merged_data <- merge_expression_module(       data_extract = list(adsl_var = adsl_extract, adlb_var = adlb_extract),       datasets = data_list,       join_keys = join_keys,       merge_function = \"dplyr::left_join\"     )      code_merge <- reactive({       for (exp in merged_data()$expr) data_q <- teal.code::eval_code(data_q, exp)       data_q     })      output$expr <- renderText(paste(merged_data()$expr, collapse = \"\\n\"))     output$data <- renderDataTable(code_merge()[[\"ANL\"]])   } ) if (FALSE) { shinyApp(app$ui, app$server) }"},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_expression_srv.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data merge module server — merge_expression_srv","text":"","code":"merge_expression_srv(   id = \"merge_id\",   selector_list,   datasets,   join_keys,   merge_function = \"dplyr::full_join\",   anl_name = \"ANL\" )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_expression_srv.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data merge module server — merge_expression_srv","text":"id ID string corresponds ID used call module's UI function. selector_list (reactive) output data_extract_multiple_srv() reactive named list outputs data_extract_srv(). using reactive named list, names must identical shiny ids respective data_extract_ui(). datasets (named list reactive non-reactive data.frame) object containing data list data.frame. passing list non-reactive data.frame objects, converted reactive data.frame objects internally. join_keys (join_keys) variables used join keys datasets datasets. used extract keys every dataset. merge_function (character(1) reactive) character string function accepts arguments x, y perform merging datasets. anl_name (character(1)) Name analysis dataset.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_expression_srv.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data merge module server — merge_expression_srv","text":"reactive expression output merge_datasets().","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_expression_srv.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Data merge module server — merge_expression_srv","text":"additional processing data_extract list input required, merge_expression_srv() can combined data_extract_multiple_srv() data_extract_srv() influence selector_list input. Compare example found merge_expression_module().","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_expression_srv.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Data merge module server — merge_expression_srv","text":"","code":"library(shiny)  ADSL <- data.frame(   STUDYID = \"A\",   USUBJID = LETTERS[1:10],   SEX = rep(c(\"F\", \"M\"), 5),   AGE = rpois(10, 30),   BMRKR1 = rlnorm(10) )  ADLB <- expand.grid(   STUDYID = \"A\",   USUBJID = LETTERS[1:10],   PARAMCD = c(\"ALT\", \"CRP\", \"IGA\"),   AVISIT = c(\"SCREENING\", \"BASELINE\", \"WEEK 1 DAY 8\", \"WEEK 2 DAY 15\") ) ADLB$AVAL <- rlnorm(120) ADLB$CHG <- rlnorm(120)  data_list <- list(   ADSL = ADSL,   ADLB = ADLB )  join_keys <- teal.data::join_keys(   teal.data::join_key(\"ADSL\", \"ADSL\", c(\"STUDYID\", \"USUBJID\")),   teal.data::join_key(\"ADSL\", \"ADLB\", c(\"STUDYID\", \"USUBJID\")),   teal.data::join_key(\"ADLB\", \"ADLB\", c(\"STUDYID\", \"USUBJID\", \"PARAMCD\", \"AVISIT\")) )  adsl_extract <- data_extract_spec(   dataname = \"ADSL\",   select = select_spec(     label = \"Select variable:\",     choices = c(\"AGE\", \"BMRKR1\"),     selected = \"AGE\",     multiple = TRUE,     fixed = FALSE   ) ) adlb_extract <- data_extract_spec(   dataname = \"ADLB\",   filter = filter_spec(vars = \"PARAMCD\", choices = c(\"ALT\", \"CRP\", \"IGA\"), selected = \"ALT\"),   select = select_spec(     label = \"Select variable:\",     choices = c(\"AVAL\", \"CHG\"),     selected = \"AVAL\",     multiple = TRUE,     fixed = FALSE   ) )  app <- shinyApp(   ui = fluidPage(     teal.widgets::standard_layout(       output = div(         verbatimTextOutput(\"expr\"),         dataTableOutput(\"data\")       ),       encoding = tagList(         data_extract_ui(\"adsl_var\", label = \"ADSL selection\", adsl_extract),         data_extract_ui(\"adlb_var\", label = \"ADLB selection\", adlb_extract)       )     )   ),   server = function(input, output, session) {     data_q <- teal.code::new_qenv()      data_q <- teal.code::eval_code(       data_q,       \"ADSL <- data.frame(         STUDYID = 'A',         USUBJID = LETTERS[1:10],         SEX = rep(c('F', 'M'), 5),         AGE = rpois(10, 30),         BMRKR1 = rlnorm(10)       )\"     )      data_q <- teal.code::eval_code(       data_q,       \"ADLB <- expand.grid(         STUDYID = 'A',         USUBJID = LETTERS[1:10],         PARAMCD = c('ALT', 'CRP', 'IGA'),         AVISIT = c('SCREENING', 'BASELINE', 'WEEK 1 DAY 8', 'WEEK 2 DAY 15'),         AVAL = rlnorm(120),         CHG = rlnorm(120)       )\"     )      selector_list <- data_extract_multiple_srv(       list(adsl_var = adsl_extract, adlb_var = adlb_extract),       datasets = data_list     )     merged_data <- merge_expression_srv(       selector_list = selector_list,       datasets = data_list,       join_keys = join_keys,       merge_function = \"dplyr::left_join\"     )      code_merge <- reactive({       for (exp in merged_data()$expr) data_q <- teal.code::eval_code(data_q, exp)       data_q     })      output$expr <- renderText(paste(merged_data()$expr, collapse = \"\\n\"))     output$data <- renderDataTable(code_merge()[[\"ANL\"]])   } ) if (FALSE) { shinyApp(app$ui, app$server) }"},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_selectors.html","id":null,"dir":"Reference","previous_headings":"","what":"Merge selectors - select item if all of dataname, reshape, filters and keys items are identical — merge_selectors","title":"Merge selectors - select item if all of dataname, reshape, filters and keys items are identical — merge_selectors","text":"Merge selectors - select item dataname, reshape, filters keys items identical","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_selectors.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Merge selectors - select item if all of dataname, reshape, filters and keys items are identical — merge_selectors","text":"","code":"merge_selectors(selector_list)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_selectors.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Merge selectors - select item if all of dataname, reshape, filters and keys items are identical — merge_selectors","text":"selector_list (reactive) output data_extract_multiple_srv() reactive named list outputs data_extract_srv(). using reactive named list, names must identical shiny ids respective data_extract_ui().","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_selectors.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Merge selectors - select item if all of dataname, reshape, filters and keys items are identical — merge_selectors","text":"error nothing","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/merge_selectors.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Merge selectors - select item if all of dataname, reshape, filters and keys items are identical — merge_selectors","text":"","code":"selector_list <- list(   # ADSL - SEX   list(     filters = NULL, select = \"AGE\", always_selected = NULL,     reshape = FALSE, dataname = \"ADSL\",     internal_id = \"adsl_var\", keys = c(\"STUDYID\", \"USUBJID\")   ),    # ADSL - AGE   list(     filters = NULL, select = \"SEX\", always_selected = NULL,     reshape = FALSE, dataname = \"ADSL\",     internal_id = \"adsl_var2\", keys = c(\"STUDYID\", \"USUBJID\")   ),    # ADLB - AVAL   list(     filters = NULL, select = \"AVAL\", always_selected = NULL,     reshape = FALSE, dataname = \"ADLB\",     internal_id = \"adlb_var\", keys = c(       \"STUDYID\", \"USUBJID\",       \"PARAMCD\", \"AVISIT\"     )   ) ) merged_selectors <- teal.transform:::merge_selectors(selector_list) merged_selectors #> [[1]] #> [[1]][[1]] #> [[1]][[1]]$filters #> NULL #>  #> [[1]][[1]]$select #> [1] \"AGE\" \"SEX\" #>  #> [[1]][[1]]$always_selected #> NULL #>  #> [[1]][[1]]$reshape #> [1] FALSE #>  #> [[1]][[1]]$dataname #> [1] \"ADSL\" #>  #> [[1]][[1]]$internal_id #> [1] \"adsl_var\" #>  #> [[1]][[1]]$keys #> [1] \"STUDYID\" \"USUBJID\" #>  #>  #> [[1]][[2]] #> [[1]][[2]]$filters #> NULL #>  #> [[1]][[2]]$select #> [1] \"AVAL\" #>  #> [[1]][[2]]$always_selected #> NULL #>  #> [[1]][[2]]$reshape #> [1] FALSE #>  #> [[1]][[2]]$dataname #> [1] \"ADLB\" #>  #> [[1]][[2]]$internal_id #> [1] \"adlb_var\" #>  #> [[1]][[2]]$keys #> [1] \"STUDYID\" \"USUBJID\" \"PARAMCD\" \"AVISIT\"  #>  #>  #>  #> [[2]] #>   adsl_var  adsl_var2   adlb_var  #> \"adsl_var\" \"adsl_var\" \"adlb_var\"  #>"},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/no_selected_as_NULL.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Check select choices for no choice made — no_selected_as_NULL","text":"","code":"no_selected_as_NULL(x)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/no_selected_as_NULL.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Check select choices for no choice made — no_selected_as_NULL","text":"x (character) Word shall checked NULL, empty, \"---selection\"","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/no_selected_as_NULL.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Check select choices for no choice made — no_selected_as_NULL","text":"word NULL","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/parse_merge_key_i.html","id":null,"dir":"Reference","previous_headings":"","what":"Parses merge keys — parse_merge_key_i","title":"Parses merge keys — parse_merge_key_i","text":"Parses merge keys","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/parse_merge_key_i.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Parses merge keys — parse_merge_key_i","text":"","code":"parse_merge_key_i(   selector_list,   idx,   dplyr_call_data = get_dplyr_call_data(selector_list),   merge_key = get_merge_key_i(selector_list, idx, dplyr_call_data) )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/parse_merge_key_i.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Parses merge keys — parse_merge_key_i","text":"selector_list (reactive) output data_extract_multiple_srv() reactive named list outputs data_extract_srv(). using reactive named list, names must identical shiny ids respective data_extract_ui(). idx optional (integer) current selector index selectors list dplyr_call_data (list) simplified selectors aggregated set filters, merge_key keys obtained get_merge_key_i","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADAE.html","id":null,"dir":"Reference","previous_headings":"","what":"Random adverse events — rADAE","title":"Random adverse events — rADAE","text":"Random adverse events","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADAE.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Random adverse events — rADAE","text":"","code":"rADAE"},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADAE.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Random adverse events — rADAE","text":"object class tbl_df (inherits tbl, data.frame) 1934 rows 92 columns.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADAE.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Random adverse events — rADAE","text":"internal","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADLB.html","id":null,"dir":"Reference","previous_headings":"","what":"Random lab analysis — rADLB","title":"Random lab analysis — rADLB","text":"Random lab analysis","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADLB.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Random lab analysis — rADLB","text":"","code":"rADLB"},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADLB.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Random lab analysis — rADLB","text":"object class tbl_df (inherits tbl, data.frame) 8400 rows 102 columns.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADLB.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Random lab analysis — rADLB","text":"internal","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADRS.html","id":null,"dir":"Reference","previous_headings":"","what":"Random response — rADRS","title":"Random response — rADRS","text":"Random response","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADRS.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Random response — rADRS","text":"","code":"rADRS"},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADRS.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Random response — rADRS","text":"object class tbl_df (inherits tbl, data.frame) 3200 rows 65 columns.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADRS.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Random response — rADRS","text":"internal","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADSL.html","id":null,"dir":"Reference","previous_headings":"","what":"Random patient listing — rADSL","title":"Random patient listing — rADSL","text":"Random patient listing","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADSL.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Random patient listing — rADSL","text":"","code":"rADSL"},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADSL.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Random patient listing — rADSL","text":"object class tbl_df (inherits tbl, data.frame) 400 rows 55 columns.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADSL.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Random patient listing — rADSL","text":"internal","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADTTE.html","id":null,"dir":"Reference","previous_headings":"","what":"Random Time to Event Analysis Dataset — rADTTE","title":"Random Time to Event Analysis Dataset — rADTTE","text":"Random Time Event Analysis Dataset","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADTTE.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Random Time to Event Analysis Dataset — rADTTE","text":"","code":"rADTTE"},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADTTE.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Random Time to Event Analysis Dataset — rADTTE","text":"object class tbl_df (inherits tbl, data.frame) 2000 rows 67 columns.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/rADTTE.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Random Time to Event Analysis Dataset — rADTTE","text":"internal","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/resolve.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Resolve delayed inputs by evaluating the code within the provided datasets — resolve","text":"","code":"resolve(x, datasets, keys = NULL)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/resolve.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Resolve delayed inputs by evaluating the code within the provided datasets — resolve","text":"x Object class delayed_data resolve. datasets named list type data.frame use evaluation. keys named list type character used keys dataset. names list must exactly datasets.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/resolve.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Resolve delayed inputs by evaluating the code within the provided datasets — resolve","text":"Resolved object.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/resolve.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Resolve delayed inputs by evaluating the code within the provided datasets — resolve","text":"","code":"ADSL <- teal.transform::rADSL attr(ADSL, \"keys\") <- teal.data::get_cdisc_keys(\"ADSL\") data_list <- list(ADSL = shiny::reactive(ADSL)) keys <- list(ADSL = attr(ADSL, \"keys\")) shiny::isolate({   # value_choices example   v1 <- value_choices(\"ADSL\", \"SEX\", \"SEX\")   v1   teal.transform:::resolve(v1, data_list, keys)    # variable_choices example   v2 <- variable_choices(\"ADSL\", c(\"BMRKR1\", \"BMRKR2\"))   v2   teal.transform:::resolve(v2, data_list, keys)    # data_extract_spec example   adsl_filter <- filter_spec(     vars = variable_choices(\"ADSL\", \"SEX\"),     sep = \"-\",     choices = value_choices(\"ADSL\", \"SEX\", \"SEX\"),     selected = \"F\",     multiple = FALSE,     label = \"Choose endpoint and Censor\"   )    adsl_select <- select_spec(     label = \"Select variable:\",     choices = variable_choices(\"ADSL\", c(\"BMRKR1\", \"BMRKR2\")),     selected = \"BMRKR1\",     multiple = FALSE,     fixed = FALSE   )    adsl_de <- data_extract_spec(     dataname = \"ADSL\",     select = adsl_select,     filter = adsl_filter   )    teal.transform:::resolve(adsl_filter, data_list, keys)   teal.transform:::resolve(adsl_select, data_list, keys)   teal.transform:::resolve(adsl_de, data_list, keys)    # nested list (arm_ref_comp)   arm_ref_comp <- list(     ARMCD = list(       ref = variable_choices(\"ADSL\"),       comp = variable_choices(\"ADSL\")     )   )    teal.transform:::resolve(arm_ref_comp, data_list, keys) }) #> $ARMCD #> $ARMCD$ref #> number of choices: 55  #>  #> STUDYID: Study Identifier #> USUBJID: Unique Subject Identifier #> SUBJID: Subject Identifier for the Study #> SITEID: Study Site Identifier #> AGE: Age #> AGEU: Age Units #> SEX: Sex #> RACE: Race #> ETHNIC: Ethnicity #> COUNTRY: Country #> DTHFL: Subject Death Flag #> INVID: Investigator Identifier #> INVNAM: Investigator Name #> ARM: Description of Planned Arm #> ARMCD: Planned Arm Code #> ACTARM: Description of Actual Arm #> ACTARMCD: Actual Arm Code #> TRT01P: Planned Treatment for Period 01 #> TRT01A: Actual Treatment for Period 01 #> TRT02P: Planned Treatment for Period 02 #> TRT02A: Actual Treatment for Period 02 #> REGION1: Geographic Region 1 #> STRATA1: Stratification Factor 1 #> STRATA2: Stratification Factor 2 #> BMRKR1: Continuous Level Biomarker 1 #> BMRKR2: Categorical Level Biomarker 2 #> ITTFL: Intent-To-Treat Population Flag #> SAFFL: Safety Population Flag #> BMEASIFL: Response Evaluable Population Flag #> BEP01FL: Biomarker Evaluable Population Flag #> AEWITHFL: AE Leading to Drug Withdrawal Flag #> RANDDT: Date of Randomization #> TRTSDTM: Datetime of First Exposure to Treatment #> TRTEDTM: Datetime of Last Exposure to Treatment #> TRT01SDTM: Datetime of First Exposure to Treatment in Period 01 #> TRT01EDTM: Datetime of Last Exposure in Period 01 #> TRT02SDTM: Datetime of First Exposure to Treatment in Period 02 #> TRT02EDTM: Datetime of Last Exposure to Treatment in Period 02 #> AP01SDTM: Period 01 Start Datetime #> AP01EDTM: Period 01 End Datetime #> AP02SDTM: Period 02 Start Datetime #> AP02EDTM: Period 02 End Datetime #> EOSSTT: End of Study Status #> EOTSTT: End of Treatment Status #> EOSDT: End of Study Date #> EOSDY: End of Study Relative Day #> DCSREAS: Reason for Discontinuation from Study #> DTHDT: Date of Death #> DTHCAUS: Cause of Death #> DTHCAT: Cause of Death Category #> LDDTHELD: Elapsed Days from Last Dose to Death #> LDDTHGR1: Last Dose to Death - Days Elapsed Grp 1 #> LSTALVDT: Date Last Known Alive #> DTHADY: Relative Day of Death #> ADTHAUT: Autopsy Performed #>  #>  #> $ARMCD$comp #> number of choices: 55  #>  #> STUDYID: Study Identifier #> USUBJID: Unique Subject Identifier #> SUBJID: Subject Identifier for the Study #> SITEID: Study Site Identifier #> AGE: Age #> AGEU: Age Units #> SEX: Sex #> RACE: Race #> ETHNIC: Ethnicity #> COUNTRY: Country #> DTHFL: Subject Death Flag #> INVID: Investigator Identifier #> INVNAM: Investigator Name #> ARM: Description of Planned Arm #> ARMCD: Planned Arm Code #> ACTARM: Description of Actual Arm #> ACTARMCD: Actual Arm Code #> TRT01P: Planned Treatment for Period 01 #> TRT01A: Actual Treatment for Period 01 #> TRT02P: Planned Treatment for Period 02 #> TRT02A: Actual Treatment for Period 02 #> REGION1: Geographic Region 1 #> STRATA1: Stratification Factor 1 #> STRATA2: Stratification Factor 2 #> BMRKR1: Continuous Level Biomarker 1 #> BMRKR2: Categorical Level Biomarker 2 #> ITTFL: Intent-To-Treat Population Flag #> SAFFL: Safety Population Flag #> BMEASIFL: Response Evaluable Population Flag #> BEP01FL: Biomarker Evaluable Population Flag #> AEWITHFL: AE Leading to Drug Withdrawal Flag #> RANDDT: Date of Randomization #> TRTSDTM: Datetime of First Exposure to Treatment #> TRTEDTM: Datetime of Last Exposure to Treatment #> TRT01SDTM: Datetime of First Exposure to Treatment in Period 01 #> TRT01EDTM: Datetime of Last Exposure in Period 01 #> TRT02SDTM: Datetime of First Exposure to Treatment in Period 02 #> TRT02EDTM: Datetime of Last Exposure to Treatment in Period 02 #> AP01SDTM: Period 01 Start Datetime #> AP01EDTM: Period 01 End Datetime #> AP02SDTM: Period 02 Start Datetime #> AP02EDTM: Period 02 End Datetime #> EOSSTT: End of Study Status #> EOTSTT: End of Treatment Status #> EOSDT: End of Study Date #> EOSDY: End of Study Relative Day #> DCSREAS: Reason for Discontinuation from Study #> DTHDT: Date of Death #> DTHCAUS: Cause of Death #> DTHCAT: Cause of Death Category #> LDDTHELD: Elapsed Days from Last Dose to Death #> LDDTHGR1: Last Dose to Death - Days Elapsed Grp 1 #> LSTALVDT: Date Last Known Alive #> DTHADY: Relative Day of Death #> ADTHAUT: Autopsy Performed #>  #>  #>"},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/resolve_delayed.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Resolve delayed inputs by evaluating the code within the provided datasets — resolve_delayed","text":"","code":"resolve_delayed(x, datasets, keys)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/resolve_delayed.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Resolve delayed inputs by evaluating the code within the provided datasets — resolve_delayed","text":"x (delayed_data, list) resolve. datasets (FilteredData named list) use reference resolve x. keys (named list) primary keys dataset datasets. names(keys) match names(datasets)","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/resolve_delayed.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Resolve delayed inputs by evaluating the code within the provided datasets — resolve_delayed","text":"Resolved object.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/resolve_delayed.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Resolve delayed inputs by evaluating the code within the provided datasets — resolve_delayed","text":"","code":"ADSL <- teal.transform::rADSL shiny::isolate({   ds <- teal.slice::init_filtered_data(     list(ADSL = list(dataset = ADSL))   )    # value_choices example   v1 <- value_choices(\"ADSL\", \"SEX\", \"SEX\")   v1   resolve_delayed(v1, ds)    # variable_choices example   v2 <- variable_choices(\"ADSL\", c(\"BMRKR1\", \"BMRKR2\"))   v2   resolve_delayed(v2, ds)    # data_extract_spec example   adsl_filter <- filter_spec(     vars = variable_choices(\"ADSL\", \"SEX\"),     sep = \"-\",     choices = value_choices(\"ADSL\", \"SEX\", \"SEX\"),     selected = \"F\",     multiple = FALSE,     label = \"Choose endpoint and Censor\"   )    adsl_select <- select_spec(     label = \"Select variable:\",     choices = variable_choices(\"ADSL\", c(\"BMRKR1\", \"BMRKR2\")),     selected = \"BMRKR1\",     multiple = FALSE,     fixed = FALSE   )    adsl_de <- data_extract_spec(     dataname = \"ADSL\",     select = adsl_select,     filter = adsl_filter   )    resolve_delayed(adsl_filter, ds)   resolve_delayed(adsl_select, ds)   resolve_delayed(adsl_de, ds)    # nested list (arm_ref_comp)   arm_ref_comp <- list(     ARMCD = list(       ref = variable_choices(\"ADSL\"),       comp = variable_choices(\"ADSL\")     )   )    resolve_delayed(arm_ref_comp, ds) }) #> $ARMCD #> $ARMCD$ref #> number of choices: 55  #>  #> STUDYID: Study Identifier #> USUBJID: Unique Subject Identifier #> SUBJID: Subject Identifier for the Study #> SITEID: Study Site Identifier #> AGE: Age #> AGEU: Age Units #> SEX: Sex #> RACE: Race #> ETHNIC: Ethnicity #> COUNTRY: Country #> DTHFL: Subject Death Flag #> INVID: Investigator Identifier #> INVNAM: Investigator Name #> ARM: Description of Planned Arm #> ARMCD: Planned Arm Code #> ACTARM: Description of Actual Arm #> ACTARMCD: Actual Arm Code #> TRT01P: Planned Treatment for Period 01 #> TRT01A: Actual Treatment for Period 01 #> TRT02P: Planned Treatment for Period 02 #> TRT02A: Actual Treatment for Period 02 #> REGION1: Geographic Region 1 #> STRATA1: Stratification Factor 1 #> STRATA2: Stratification Factor 2 #> BMRKR1: Continuous Level Biomarker 1 #> BMRKR2: Categorical Level Biomarker 2 #> ITTFL: Intent-To-Treat Population Flag #> SAFFL: Safety Population Flag #> BMEASIFL: Response Evaluable Population Flag #> BEP01FL: Biomarker Evaluable Population Flag #> AEWITHFL: AE Leading to Drug Withdrawal Flag #> RANDDT: Date of Randomization #> TRTSDTM: Datetime of First Exposure to Treatment #> TRTEDTM: Datetime of Last Exposure to Treatment #> TRT01SDTM: Datetime of First Exposure to Treatment in Period 01 #> TRT01EDTM: Datetime of Last Exposure in Period 01 #> TRT02SDTM: Datetime of First Exposure to Treatment in Period 02 #> TRT02EDTM: Datetime of Last Exposure to Treatment in Period 02 #> AP01SDTM: Period 01 Start Datetime #> AP01EDTM: Period 01 End Datetime #> AP02SDTM: Period 02 Start Datetime #> AP02EDTM: Period 02 End Datetime #> EOSSTT: End of Study Status #> EOTSTT: End of Treatment Status #> EOSDT: End of Study Date #> EOSDY: End of Study Relative Day #> DCSREAS: Reason for Discontinuation from Study #> DTHDT: Date of Death #> DTHCAUS: Cause of Death #> DTHCAT: Cause of Death Category #> LDDTHELD: Elapsed Days from Last Dose to Death #> LDDTHGR1: Last Dose to Death - Days Elapsed Grp 1 #> LSTALVDT: Date Last Known Alive #> DTHADY: Relative Day of Death #> ADTHAUT: Autopsy Performed #>  #>  #> $ARMCD$comp #> number of choices: 55  #>  #> STUDYID: Study Identifier #> USUBJID: Unique Subject Identifier #> SUBJID: Subject Identifier for the Study #> SITEID: Study Site Identifier #> AGE: Age #> AGEU: Age Units #> SEX: Sex #> RACE: Race #> ETHNIC: Ethnicity #> COUNTRY: Country #> DTHFL: Subject Death Flag #> INVID: Investigator Identifier #> INVNAM: Investigator Name #> ARM: Description of Planned Arm #> ARMCD: Planned Arm Code #> ACTARM: Description of Actual Arm #> ACTARMCD: Actual Arm Code #> TRT01P: Planned Treatment for Period 01 #> TRT01A: Actual Treatment for Period 01 #> TRT02P: Planned Treatment for Period 02 #> TRT02A: Actual Treatment for Period 02 #> REGION1: Geographic Region 1 #> STRATA1: Stratification Factor 1 #> STRATA2: Stratification Factor 2 #> BMRKR1: Continuous Level Biomarker 1 #> BMRKR2: Categorical Level Biomarker 2 #> ITTFL: Intent-To-Treat Population Flag #> SAFFL: Safety Population Flag #> BMEASIFL: Response Evaluable Population Flag #> BEP01FL: Biomarker Evaluable Population Flag #> AEWITHFL: AE Leading to Drug Withdrawal Flag #> RANDDT: Date of Randomization #> TRTSDTM: Datetime of First Exposure to Treatment #> TRTEDTM: Datetime of Last Exposure to Treatment #> TRT01SDTM: Datetime of First Exposure to Treatment in Period 01 #> TRT01EDTM: Datetime of Last Exposure in Period 01 #> TRT02SDTM: Datetime of First Exposure to Treatment in Period 02 #> TRT02EDTM: Datetime of Last Exposure to Treatment in Period 02 #> AP01SDTM: Period 01 Start Datetime #> AP01EDTM: Period 01 End Datetime #> AP02SDTM: Period 02 Start Datetime #> AP02EDTM: Period 02 End Datetime #> EOSSTT: End of Study Status #> EOTSTT: End of Treatment Status #> EOSDT: End of Study Date #> EOSDY: End of Study Relative Day #> DCSREAS: Reason for Discontinuation from Study #> DTHDT: Date of Death #> DTHCAUS: Cause of Death #> DTHCAT: Cause of Death Category #> LDDTHELD: Elapsed Days from Last Dose to Death #> LDDTHGR1: Last Dose to Death - Days Elapsed Grp 1 #> LSTALVDT: Date Last Known Alive #> DTHADY: Relative Day of Death #> ADTHAUT: Autopsy Performed #>  #>  #>"},{"path":"https://insightsengineering.github.io/teal.transform/reference/resolve_delayed_expr.html","id":null,"dir":"Reference","previous_headings":"","what":"Resolve expression after delayed data are loaded — resolve_delayed_expr","title":"Resolve expression after delayed data are loaded — resolve_delayed_expr","text":"Resolve expression delayed data loaded","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/resolve_delayed_expr.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Resolve expression after delayed data are loaded — resolve_delayed_expr","text":"","code":"resolve_delayed_expr(x, ds, is_value_choices)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/resolve_delayed_expr.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Resolve expression after delayed data are loaded — resolve_delayed_expr","text":"x (function) Function applied dataset. must take single argument \"data\" return character vector columns / values. ds (data.frame) TealDataset function applied . is_value_choices (logical) Determines check returned value applied.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/resolve_delayed_expr.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Resolve expression after delayed data are loaded — resolve_delayed_expr","text":"Character vector - result calling function x dataset ds.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/resolve_delayed_expr.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Resolve expression after delayed data are loaded — resolve_delayed_expr","text":"","code":"if (FALSE) { # get only possible factor variables from mtcars dataset resolve_delayed_expr(   function(data) {     idx <- vapply(data, function(x) is.numeric(x) && length(unique(x)) <= 6, logical(1))     colnames(data)[idx]   },   ds = mtcars,   is_value_choices = FALSE ) }"},{"path":"https://insightsengineering.github.io/teal.transform/reference/select_spec.html","id":null,"dir":"Reference","previous_headings":"","what":"Column selection input specification — select_spec","title":"Column selection input specification — select_spec","text":"select_spec used inside teal create selectInput select columns dataset.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/select_spec.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Column selection input specification — select_spec","text":"","code":"select_spec(   choices,   selected = if (inherits(choices, \"delayed_data\")) NULL else choices[1],   multiple = length(selected) > 1 || inherits(selected, \"all_choices\"),   fixed = FALSE,   always_selected = NULL,   ordered = FALSE,   label = \"Select\" )  select_spec.delayed_data(   choices,   selected = NULL,   multiple = length(selected) > 1,   fixed = FALSE,   always_selected = NULL,   ordered = FALSE,   label = NULL )  select_spec.default(   choices,   selected = choices[1],   multiple = length(selected) > 1,   fixed = FALSE,   always_selected = NULL,   ordered = FALSE,   label = NULL )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/select_spec.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Column selection input specification — select_spec","text":"choices (character) (delayed_data) object. Named character vector define choices shiny selectInput. columns dataset defined data_extract_spec called. delayed_data objects can created via variable_choices value_choices. selected optional (character NULL all_choices delayed_data object). Named character vector define selected values shiny selectInput. Passing all_choices() object indicates selecting possible choices. Defaults first value choices NULL delayed data loading. multiple (logical) Whether multiple values shall allowed shiny selectInput. fixed optional (logical). data_extract_spec specific feature hide choices selected case needed. Setting fixed TRUE allow user select columns. lead selection columns dataset defined developer app. always_selected (character) Additional column names data set always selected ordered (logical(1)) Flags whether selection order tracked. label optional (character). Define label top specific shiny selectInput. default value \"Select\".","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/select_spec.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Column selection input specification — select_spec","text":"select_spec-S3 class object delayed_select_spec-S3-class object. contains input values. select_spec, function double checks choices selected inputs.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/select_spec.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Column selection input specification — select_spec","text":"","code":"# Selection with just one column allowed select_spec(   choices = c(\"AVAL\", \"BMRKR1\", \"AGE\"),   selected = c(\"AVAL\"),   multiple = FALSE,   fixed = FALSE,   label = \"Column\" ) #> $choices #>     AVAL   BMRKR1      AGE  #>   \"AVAL\" \"BMRKR1\"    \"AGE\"  #>  #> $selected #>   AVAL  #> \"AVAL\"  #>  #> $multiple #> [1] FALSE #>  #> $fixed #> [1] FALSE #>  #> $always_selected #> NULL #>  #> $ordered #> [1] FALSE #>  #> $label #> [1] \"Column\" #>  #> attr(,\"class\") #> [1] \"select_spec\"  # Selection with just multiple columns allowed select_spec(   choices = c(\"AVAL\", \"BMRKR1\", \"AGE\"),   selected = c(\"AVAL\", \"BMRKR1\"),   multiple = TRUE,   fixed = FALSE,   label = \"Columns\" ) #> $choices #>     AVAL   BMRKR1      AGE  #>   \"AVAL\" \"BMRKR1\"    \"AGE\"  #>  #> $selected #>     AVAL   BMRKR1  #>   \"AVAL\" \"BMRKR1\"  #>  #> $multiple #> [1] TRUE #>  #> $fixed #> [1] FALSE #>  #> $always_selected #> NULL #>  #> $ordered #> [1] FALSE #>  #> $label #> [1] \"Columns\" #>  #> attr(,\"class\") #> [1] \"select_spec\"  # Selection without user access select_spec(   choices = c(\"AVAL\", \"BMRKR1\"),   selected = c(\"AVAL\", \"BMRKR1\"),   multiple = TRUE,   fixed = TRUE,   label = \"Columns\" ) #> $choices #>     AVAL   BMRKR1  #>   \"AVAL\" \"BMRKR1\"  #>  #> $selected #>     AVAL   BMRKR1  #>   \"AVAL\" \"BMRKR1\"  #>  #> $multiple #> [1] TRUE #>  #> $fixed #> [1] TRUE #>  #> $always_selected #> NULL #>  #> $ordered #> [1] FALSE #>  #> $label #> [1] \"Columns\" #>  #> attr(,\"class\") #> [1] \"select_spec\"  # Delayed version select_spec(   label = \"Select variable:\",   choices = variable_choices(\"ADSL\", c(\"BMRKR1\", \"BMRKR2\")),   selected = \"BMRKR1\",   multiple = FALSE,   fixed = FALSE ) #> select_spec with delayed data: ADSL #> $ choices #>   variable_choices with delayed data: ADSL #>   $ data #>   [1] \"ADSL\" #>   $ subset #>   [1] \"BMRKR1\" \"BMRKR2\" #>   $ key #>   NULL #> $ selected #> [1] \"BMRKR1\" #> $ multiple #> [1] FALSE #> $ fixed #> [1] FALSE #> $ always_selected #> NULL #> $ ordered #> [1] FALSE #> $ label #> [1] \"Select variable:\"  # all_choices passed to selected select_spec(   label = \"Select variable:\",   choices = variable_choices(\"ADSL\", c(\"BMRKR1\", \"BMRKR2\")),   selected = all_choices() ) #> select_spec with delayed data: ADSL #> $ choices #>   variable_choices with delayed data: ADSL #>   $ data #>   [1] \"ADSL\" #>   $ subset #>   [1] \"BMRKR1\" \"BMRKR2\" #>   $ key #>   NULL #> $ selected #>   variable_choices with delayed data: ADSL #>   $ data #>   [1] \"ADSL\" #>   $ subset #>   [1] \"BMRKR1\" \"BMRKR2\" #>   $ key #>   NULL #> $ multiple #> [1] TRUE #> $ fixed #> [1] FALSE #> $ always_selected #> NULL #> $ ordered #> [1] FALSE #> $ label #> [1] \"Select variable:\"  # Both below objects are semantically the same select_spec(choices = variable_choices(\"ADSL\"), selected = variable_choices(\"ADSL\")) #> select_spec with delayed data: ADSL #> $ choices #>   variable_choices with delayed data: ADSL #>   $ data #>   [1] \"ADSL\" #>   $ subset #>   NULL #>   $ key #>   NULL #> $ selected #>   variable_choices with delayed data: ADSL #>   $ data #>   [1] \"ADSL\" #>   $ subset #>   NULL #>   $ key #>   NULL #> $ multiple #> [1] TRUE #> $ fixed #> [1] FALSE #> $ always_selected #> NULL #> $ ordered #> [1] FALSE #> $ label #> [1] \"Select\" select_spec(choices = variable_choices(\"ADSL\"), selected = all_choices()) #> select_spec with delayed data: ADSL #> $ choices #>   variable_choices with delayed data: ADSL #>   $ data #>   [1] \"ADSL\" #>   $ subset #>   NULL #>   $ key #>   NULL #> $ selected #>   variable_choices with delayed data: ADSL #>   $ data #>   [1] \"ADSL\" #>   $ subset #>   NULL #>   $ key #>   NULL #> $ multiple #> [1] TRUE #> $ fixed #> [1] FALSE #> $ always_selected #> NULL #> $ ordered #> [1] FALSE #> $ label #> [1] \"Select\""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/split_by_sep.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Split by separator — split_by_sep","text":"","code":"split_by_sep(x, sep)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/split_by_sep.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Split by separator — split_by_sep","text":"x (character) Character (single) sep (character) Separator","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/teal.transform-package.html","id":null,"dir":"Reference","previous_headings":"","what":"teal.transform: Functions for extracting and merging data in the teal framework — teal.transform-package","title":"teal.transform: Functions for extracting and merging data in the teal framework — teal.transform-package","text":"standardized user interface column selection, facilitates dataset merging 'teal' framework.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/teal.transform-package.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"teal.transform: Functions for extracting and merging data in the teal framework — teal.transform-package","text":"Maintainer: Dawid Kaledkowski dawid.kaledkowski@roche.com Authors: Pawel Rucki pawel.rucki@roche.com Mahmoud Hallal mahmoud.hallal@roche.com Nikolas Burkoff Maciej Nasinski Konrad Pagacz Junlue Zhao contributors: F. Hoffmann-La Roche AG [copyright holder, funder]","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/validate_keys_sufficient.html","id":null,"dir":"Reference","previous_headings":"","what":"Validates whether the provided keys are sufficient to merge the datasets slices — validate_keys_sufficient","title":"Validates whether the provided keys are sufficient to merge the datasets slices — validate_keys_sufficient","text":"Validates whether provided keys sufficient merge datasets slices","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/validate_keys_sufficient.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Validates whether the provided keys are sufficient to merge the datasets slices — validate_keys_sufficient","text":"","code":"validate_keys_sufficient(join_keys, merged_selector_list)"},{"path":"https://insightsengineering.github.io/teal.transform/reference/validate_keys_sufficient.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Validates whether the provided keys are sufficient to merge the datasets slices — validate_keys_sufficient","text":"join_keys (join_keys) provided join keys merged_selector_list (list) specification datasets' slices merge","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/validate_keys_sufficient.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Validates whether the provided keys are sufficient to merge the datasets slices — validate_keys_sufficient","text":"TRUE provided keys meet requirements; shiny validate error otherwise","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/validate_keys_sufficient.html","id":"note","dir":"Reference","previous_headings":"","what":"Note","title":"Validates whether the provided keys are sufficient to merge the datasets slices — validate_keys_sufficient","text":"keys sufficient datasets slices described merged_selector_list come datasets, appropriate join keys join_keys.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/value_choices.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapper on choices_labeled to label variable values basing on other variable values — value_choices","text":"","code":"value_choices(data, var_choices, var_label = NULL, subset = NULL, sep = \" - \")  # S3 method for character value_choices(data, var_choices, var_label = NULL, subset = NULL, sep = \" - \")  # S3 method for data.frame value_choices(data, var_choices, var_label = NULL, subset = NULL, sep = \" - \")  # S3 method for TealDataset value_choices(data, var_choices, var_label = NULL, subset = NULL, sep = \" - \")  # S3 method for TealDatasetConnector value_choices(data, var_choices, var_label = NULL, subset = NULL, sep = \" - \")"},{"path":"https://insightsengineering.github.io/teal.transform/reference/value_choices.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapper on choices_labeled to label variable values basing on other variable values — value_choices","text":"data (data.frame, character, TealDataset, TealDatasetConnector) data.frame, data extract labels character, name dataset extract data available TealDataset TealDatasetConnector, raw data extract labels . var_choices (character NULL) vector choices column names var_label (character) vector labels column names subset (character function) character, vector values subset. function, function used determine possible columns (e.g. factor columns). case, function must take single argument \"data\" return character vector. See examples details. sep (character) separator used case multiple column names","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/value_choices.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapper on choices_labeled to label variable values basing on other variable values — value_choices","text":"named character vector delayed_data object","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/value_choices.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Wrapper on choices_labeled to label variable values basing on other variable values — value_choices","text":"","code":"ADRS <- teal.transform::rADRS value_choices(ADRS, \"PARAMCD\", \"PARAM\", subset = c(\"BESRSPI\", \"INVET\")) #> number of choices: 2  #>  #> BESRSPI: Best Confirmed Overall Response by Investigator #> INVET: Investigator End Of Induction Response #>  value_choices(ADRS, c(\"PARAMCD\", \"ARMCD\"), c(\"PARAM\", \"ARM\")) #> number of choices: 9  #>  #> BESRSPI - ARM A: Best Confirmed Overall Response by Investigator - A: Drug X #> INVET - ARM A: Investigator End Of Induction Response - A: Drug X #> OVRINV - ARM A: Overall Response by Investigator - by visit - A: Drug X #> BESRSPI - ARM C: Best Confirmed Overall Response by Investigator - C: Combination #> INVET - ARM C: Investigator End Of Induction Response - C: Combination #> OVRINV - ARM C: Overall Response by Investigator - by visit - C: Combination #> BESRSPI - ARM B: Best Confirmed Overall Response by Investigator - B: Placebo #> INVET - ARM B: Investigator End Of Induction Response - B: Placebo #> OVRINV - ARM B: Overall Response by Investigator - by visit - B: Placebo #>  value_choices(ADRS, c(\"PARAMCD\", \"ARMCD\"), c(\"PARAM\", \"ARM\"),   subset = c(\"BESRSPI - ARM A\", \"INVET - ARM A\", \"OVRINV - ARM A\") ) #> number of choices: 3  #>  #> BESRSPI - ARM A: Best Confirmed Overall Response by Investigator - A: Drug X #> INVET - ARM A: Investigator End Of Induction Response - A: Drug X #> OVRINV - ARM A: Overall Response by Investigator - by visit - A: Drug X #>  value_choices(ADRS, c(\"PARAMCD\", \"ARMCD\"), c(\"PARAM\", \"ARM\"), sep = \" --- \") #> number of choices: 9  #>  #> BESRSPI --- ARM A: Best Confirmed Overall Response by Investigator --- A: Drug X #> INVET --- ARM A: Investigator End Of Induction Response --- A: Drug X #> OVRINV --- ARM A: Overall Response by Investigator - by visit --- A: Drug X #> BESRSPI --- ARM C: Best Confirmed Overall Response by Investigator --- C: Combination #> INVET --- ARM C: Investigator End Of Induction Response --- C: Combination #> OVRINV --- ARM C: Overall Response by Investigator - by visit --- C: Combination #> BESRSPI --- ARM B: Best Confirmed Overall Response by Investigator --- B: Placebo #> INVET --- ARM B: Investigator End Of Induction Response --- B: Placebo #> OVRINV --- ARM B: Overall Response by Investigator - by visit --- B: Placebo #>   # delayed version value_choices(\"ADRS\", c(\"PARAMCD\", \"ARMCD\"), c(\"PARAM\", \"ARM\")) #> value_choices with delayed data:  ADRS #> $ data #> [1] \"ADRS\" #> $ var_choices #> [1] \"PARAMCD\" \"ARMCD\"   #> $ var_label #> [1] \"PARAM\" \"ARM\"   #> $ subset #> NULL #> $ sep #> [1] \" - \"  # functional subset value_choices(ADRS, \"PARAMCD\", \"PARAM\", subset = function(data) {   return(levels(data$PARAMCD)[1:2]) }) #> number of choices: 2  #>  #> BESRSPI: Best Confirmed Overall Response by Investigator #> INVET: Investigator End Of Induction Response #>"},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/reference/variable_choices.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapper on choices_labeled to label variables basing on existing labels in data — variable_choices","text":"","code":"variable_choices(data, subset = NULL, fill = FALSE, key = NULL)  # S3 method for character variable_choices(data, subset = NULL, fill = FALSE, key = NULL)  # S3 method for data.frame variable_choices(data, subset = NULL, fill = TRUE, key = NULL)  # S3 method for TealDataset variable_choices(   data,   subset = NULL,   fill = FALSE,   key = teal.data::get_keys(data) )  # S3 method for TealDatasetConnector variable_choices(   data,   subset = NULL,   fill = FALSE,   key = teal.data::get_keys(data) )"},{"path":"https://insightsengineering.github.io/teal.transform/reference/variable_choices.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapper on choices_labeled to label variables basing on existing labels in data — variable_choices","text":"data (data.frame, character, TealDataset, TealDatasetConnector) data.frame, data extract labels character, name dataset extract data available TealDataset TealDatasetConnector, raw data extract labels . subset (character function) character, vector column names. function, function used determine possible columns (e.g. factor columns). case, function must take single argument \"data\" return character vector. See examples details. fill (logical(1)) TRUE, function return variable names columns non-existent labels; otherwise return NA key (character) vector names variables, part primary key data argument. optional argument, allows identify variables associated primary key display appropriate icon teal.widgets::optionalSelectInput() widget.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/variable_choices.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapper on choices_labeled to label variables basing on existing labels in data — variable_choices","text":"named character vector additional attributes delayed_data object","code":""},{"path":"https://insightsengineering.github.io/teal.transform/reference/variable_choices.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Wrapper on choices_labeled to label variables basing on existing labels in data — variable_choices","text":"","code":"ADRS <- teal.transform::rADRS variable_choices(ADRS) #> number of choices: 65  #>  #> STUDYID: Study Identifier #> USUBJID: Unique Subject Identifier #> SUBJID: Subject Identifier for the Study #> SITEID: Study Site Identifier #> AGE: Age #> AGEU: Age Units #> SEX: Sex #> RACE: Race #> ETHNIC: Ethnicity #> COUNTRY: Country #> DTHFL: Subject Death Flag #> INVID: Investigator Identifier #> INVNAM: Investigator Name #> ARM: Description of Planned Arm #> ARMCD: Planned Arm Code #> ACTARM: Description of Actual Arm #> ACTARMCD: Actual Arm Code #> TRT01P: Planned Treatment for Period 01 #> TRT01A: Actual Treatment for Period 01 #> TRT02P: Planned Treatment for Period 02 #> TRT02A: Actual Treatment for Period 02 #> REGION1: Geographic Region 1 #> STRATA1: Stratification Factor 1 #> STRATA2: Stratification Factor 2 #> BMRKR1: Continuous Level Biomarker 1 #> BMRKR2: Categorical Level Biomarker 2 #> ITTFL: Intent-To-Treat Population Flag #> SAFFL: Safety Population Flag #> BMEASIFL: Response Evaluable Population Flag #> BEP01FL: Biomarker Evaluable Population Flag #> AEWITHFL: AE Leading to Drug Withdrawal Flag #> RANDDT: Date of Randomization #> TRTSDTM: Datetime of First Exposure to Treatment #> TRTEDTM: Datetime of Last Exposure to Treatment #> TRT01SDTM: Datetime of First Exposure to Treatment in Period 01 #> TRT01EDTM: Datetime of Last Exposure in Period 01 #> TRT02SDTM: Datetime of First Exposure to Treatment in Period 02 #> TRT02EDTM: Datetime of Last Exposure to Treatment in Period 02 #> AP01SDTM: Period 01 Start Datetime #> AP01EDTM: Period 01 End Datetime #> AP02SDTM: Period 02 Start Datetime #> AP02EDTM: Period 02 End Datetime #> EOSSTT: End of Study Status #> EOTSTT: End of Treatment Status #> EOSDT: End of Study Date #> EOSDY: End of Study Relative Day #> DCSREAS: Reason for Discontinuation from Study #> DTHDT: Date of Death #> DTHCAUS: Cause of Death #> DTHCAT: Cause of Death Category #> LDDTHELD: Elapsed Days from Last Dose to Death #> LDDTHGR1: Last Dose to Death - Days Elapsed Grp 1 #> LSTALVDT: Date Last Known Alive #> DTHADY: Relative Day of Death #> ADTHAUT: Autopsy Performed #> ASEQ: Analysis Sequence Number #> RSSEQ: Sequence Number #> PARAM: Parameter #> PARAMCD: Parameter Code #> AVAL: Analysis Value #> AVALC: Analysis Value (C) #> ADTM: Analysis Datetime #> ADY: Analysis Relative Day #> AVISIT: Analysis Visit #> AVISITN: Analysis Visit (N) #>  variable_choices(ADRS, subset = c(\"PARAM\", \"PARAMCD\")) #> number of choices: 2  #>  #> PARAM: Parameter #> PARAMCD: Parameter Code #>  variable_choices(ADRS, subset = c(\"\", \"PARAM\", \"PARAMCD\")) #> number of choices: 3  #>  #> :  #> PARAM: Parameter #> PARAMCD: Parameter Code #>  variable_choices(ADRS, subset = c(\"\", \"PARAM\", \"PARAMCD\"), key = teal.data::get_cdisc_keys(\"ADRS\")) #> number of choices: 3  #>  #> :  #> PARAM: Parameter #> PARAMCD: Parameter Code #>   # delayed version variable_choices(\"ADRS\", subset = c(\"USUBJID\", \"STUDYID\")) #> variable_choices with delayed data: ADRS #> $ data #> [1] \"ADRS\" #> $ subset #> [1] \"USUBJID\" \"STUDYID\" #> $ key #> NULL  # also works with [teal.data::TealDataset] and [teal.data::TealDatasetConnector] ADRS_dataset <- teal.data::dataset(\"ADRS\", ADRS, key = teal.data::get_cdisc_keys(\"ADRS\")) variable_choices(ADRS_dataset) #> number of choices: 65  #>  #> STUDYID: Study Identifier #> USUBJID: Unique Subject Identifier #> SUBJID: Subject Identifier for the Study #> SITEID: Study Site Identifier #> AGE: Age #> AGEU: Age Units #> SEX: Sex #> RACE: Race #> ETHNIC: Ethnicity #> COUNTRY: Country #> DTHFL: Subject Death Flag #> INVID: Investigator Identifier #> INVNAM: Investigator Name #> ARM: Description of Planned Arm #> ARMCD: Planned Arm Code #> ACTARM: Description of Actual Arm #> ACTARMCD: Actual Arm Code #> TRT01P: Planned Treatment for Period 01 #> TRT01A: Actual Treatment for Period 01 #> TRT02P: Planned Treatment for Period 02 #> TRT02A: Actual Treatment for Period 02 #> REGION1: Geographic Region 1 #> STRATA1: Stratification Factor 1 #> STRATA2: Stratification Factor 2 #> BMRKR1: Continuous Level Biomarker 1 #> BMRKR2: Categorical Level Biomarker 2 #> ITTFL: Intent-To-Treat Population Flag #> SAFFL: Safety Population Flag #> BMEASIFL: Response Evaluable Population Flag #> BEP01FL: Biomarker Evaluable Population Flag #> AEWITHFL: AE Leading to Drug Withdrawal Flag #> RANDDT: Date of Randomization #> TRTSDTM: Datetime of First Exposure to Treatment #> TRTEDTM: Datetime of Last Exposure to Treatment #> TRT01SDTM: Datetime of First Exposure to Treatment in Period 01 #> TRT01EDTM: Datetime of Last Exposure in Period 01 #> TRT02SDTM: Datetime of First Exposure to Treatment in Period 02 #> TRT02EDTM: Datetime of Last Exposure to Treatment in Period 02 #> AP01SDTM: Period 01 Start Datetime #> AP01EDTM: Period 01 End Datetime #> AP02SDTM: Period 02 Start Datetime #> AP02EDTM: Period 02 End Datetime #> EOSSTT: End of Study Status #> EOTSTT: End of Treatment Status #> EOSDT: End of Study Date #> EOSDY: End of Study Relative Day #> DCSREAS: Reason for Discontinuation from Study #> DTHDT: Date of Death #> DTHCAUS: Cause of Death #> DTHCAT: Cause of Death Category #> LDDTHELD: Elapsed Days from Last Dose to Death #> LDDTHGR1: Last Dose to Death - Days Elapsed Grp 1 #> LSTALVDT: Date Last Known Alive #> DTHADY: Relative Day of Death #> ADTHAUT: Autopsy Performed #> ASEQ: Analysis Sequence Number #> RSSEQ: Sequence Number #> PARAM: Parameter #> PARAMCD: Parameter Code #> AVAL: Analysis Value #> AVALC: Analysis Value (C) #> ADTM: Analysis Datetime #> ADY: Analysis Relative Day #> AVISIT: Analysis Visit #> AVISITN: Analysis Visit (N) #>   ADRS_conn <- teal.data::dataset_connector(   \"ADRS\",   pull_callable = teal.data::callable_code(\"radrs(cached = TRUE)\"),   key = teal.data::get_cdisc_keys(\"ADRS\") ) variable_choices(ADRS_conn) #> variable_choices with delayed data: ADRS #> $ data #> [1] \"ADRS\" #> $ subset #> NULL #> $ key #> [1] \"STUDYID\" \"USUBJID\" \"PARAMCD\" \"AVISIT\"   # functional subset (with delayed data) - return only factor variables variable_choices(\"ADRS\", subset = function(data) {   idx <- vapply(data, is.factor, logical(1))   return(names(data)[idx]) }) #> variable_choices with delayed data: ADRS #> $ data #> [1] \"ADRS\" #> $ subset #> function(data) { #>   idx <- vapply(data, is.factor, logical(1)) #>   return(names(data)[idx]) #> } #> <environment: 0x563aab0f8270> #> $ key #> NULL"},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/news/index.html","id":"miscellaneous-0-4-0-9006","dir":"Changelog","previous_headings":"","what":"Miscellaneous","title":"teal.transform 0.4.0.9006","text":"Specified minimal version package dependencies.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/news/index.html","id":"miscellaneous-0-4-0","dir":"Changelog","previous_headings":"","what":"Miscellaneous","title":"teal.transform 0.4.0","text":"Removed scda package dependency examples. Deprecated data_merge_module() data_merge_srv(). get_relabel_call function now returns call teal.data::col_relabel instead one formatters::var_relabel. Update installation instruction","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/news/index.html","id":"new-features-0-3-0","dir":"Changelog","previous_headings":"","what":"New Features","title":"teal.transform 0.3.0","text":"Added Queue class updated unit tests.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/news/index.html","id":"enhancements-0-3-0","dir":"Changelog","previous_headings":"","what":"Enhancements","title":"teal.transform 0.3.0","text":"Updated error messages choices_labeled(), variable_choices() value_choices() informative. Updated data_extract compatible shinyvalidate: data_extract_srv data_extract_multiple_srv accept shinyvalidate validation rules return objects now include shinyvalidate::InputValidator(s). Added helper function compose_and_enable_validators simplify enabling shinyvalidate::InputValidators returned data_extract_multiple_srv.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/news/index.html","id":"bug-fixes-0-3-0","dir":"Changelog","previous_headings":"","what":"Bug fixes","title":"teal.transform 0.3.0","text":"Fixed bug data_extract_filter_srv app developer sets selected value.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/news/index.html","id":"miscellaneous-0-3-0","dir":"Changelog","previous_headings":"","what":"Miscellaneous","title":"teal.transform 0.3.0","text":"Examples use scda.2022 instead scda.2021","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/news/index.html","id":"breaking-changes-0-2-0","dir":"Changelog","previous_headings":"","what":"Breaking changes","title":"teal.transform 0.2.0","text":"Updated data merge functionality longer expect input datanames suffix _FILTERED following changes output teal.slice::FilteredData$get_call(). Updated data merge downstream functions accept joinKeys object join_keys argument.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/news/index.html","id":"new-features-0-2-0","dir":"Changelog","previous_headings":"","what":"New features","title":"teal.transform 0.2.0","text":"data_extract_ui, data_extract_srv, data_extract_multiple_srv can initialized list (optionally reactive) data.frame objects. Added new modules merge_expression_srv merge_expression_module, updates data_merge_srv data_merge_module (deprecated future releases) respectively, datasets argument takes list (optionally reactive) data.frame objects new argument join_keys accepts joinKeys object.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/news/index.html","id":"enhancements-0-2-0","dir":"Changelog","previous_headings":"","what":"Enhancements","title":"teal.transform 0.2.0","text":"Updated examples tests use teal.slice::init_filtered_data initialize FilteredData object. Updated vignettes README content. Updated data_merge_module merge_expression_module accept NULL data_extract inputs.","code":""},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/news/index.html","id":"new-features-0-1-1","dir":"Changelog","previous_headings":"","what":"New features","title":"teal.transform 0.1.1","text":"Added formatting function format_data_extract output data_extract_srv.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/news/index.html","id":"breaking-changes-0-1-1","dir":"Changelog","previous_headings":"","what":"Breaking changes","title":"teal.transform 0.1.1","text":"Removed (previously deprecated) input_id argument data_merge_module. Updated choices_selected selected values must valid choices. using delayed resolving invalid selected removed warning thrown logs, cases error thrown.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/news/index.html","id":"miscellaneous-0-1-1","dir":"Changelog","previous_headings":"","what":"Miscellaneous","title":"teal.transform 0.1.1","text":"Added template pkgdown site. Added names id parameter chunks$push calls. Updated package authors. Added vignettes extracting merging data.","code":""},{"path":[]},{"path":[]},{"path":"https://insightsengineering.github.io/teal.transform/news/index.html","id":"new-features-0-1-0","dir":"Changelog","previous_headings":"Changes (from behavior when functionality was part of teal)","what":"New features","title":"teal.transform 0.1.0","text":"Added new argument ordered select_spec() flag whether order selection tracked.","code":""},{"path":"https://insightsengineering.github.io/teal.transform/news/index.html","id":"miscellaneous-0-1-0","dir":"Changelog","previous_headings":"Changes (from behavior when functionality was part of teal)","what":"Miscellaneous","title":"teal.transform 0.1.0","text":"get_relabel_call function now returns formatters::var_relabel instead teal.data::var_relabel.","code":""}]