_pkgdown.yaml

---
url: https://insightsengineering.github.io/simIDM

template:
  bootstrap: 5
  params:
    ganalytics: UA-125641273-1

navbar:
  structure:
    left: [intro, reference, articles, tutorials, news, reports]
    right: [search, github]
  components:
    reports:
      text: Reports
      menu:
        - text: Coverage report
          href: coverage-report/
        - text: Unit test report
          href: unit-test-report/
    github:
      icon: fa-github
      href: https://github.com/insightsengineering/simIDM

articles:
  - title: Introduction
    navbar: Introduction
    contents:
      - quickstart
      - trialplanning
      - correlation
  - title: Details
    navbar: Details
    contents:
      - pwc_survival
reference:
  - title: Package
    contents:
      - simIDM-package
  - title: Assertions
    contents:
      - assert_positive_number
      - assert_intervals
  - title: Transition parameters
    contents:
      - exponential_transition
      - piecewise_exponential
      - weibull_transition
  - title: Helper functions for piecewise or Weibull Hazards
    contents:
      - getPWCHazard
      - getSumPCW
      - getPCWDistr
      - PCWInversionMethod
      - getWaitTimeSum
  - title: Simulation of a single data set for a single treatment arm
    contents:
      - getSimulatedData
      - getOneToTwoRows
      - addStaggeredEntry
  - title: Simulation of a large number of clinical trials
    contents:
      - getOneClinicalTrial
      - getDatasetWideFormat
      - getClinicalTrials
  - title: Event tracking
    contents:
      - getTimePoint
      - getCensoredData
      - censoringByNumberEvents
      - getEventsAll
      - getNumberEvents
      - trackEventsPerTrial
  - title: Survival functions
    contents:
      - ExpSurvPFS
      - ExpSurvOS
      - ExpQuantOS
      - WeibSurvPFS
      - WeibSurvOS
      - pwA
      - PWCsurvPFS
      - PWCsurvOS
  - title: Hazard functions
    contents:
      - ExpHazOS
      - avgHRIntegExpOS
      - avgHRExpOS
  - title: Empirical significance
    contents:
      - logRankTest
      - empSignificant
  - title: Parameter Estimation
    contents:
      - estimateParams
      - getInit
      - getResults
      - getTarget
      - prepareData
  - title: Likelihood
    contents:
      - haz
      - survTrans
      - negLogLik
  - title: PFS-OS Correlation
    contents:
      - corPFSOS
      - corTrans
      - expvalPFSInteg
      - expvalOSInteg
      - log_p11
      - survPFS
      - survPFSOS
      - survOS