service.json

{
  "name": "ALOHA",
  "version": "1.0.0",
  "keywords": [
    "hippocampus",
    "atrophy",
    "dementia",
    "brain",
    "mtl"
  ],
  "shortdesc": "Hippocampal atrophy rate from two serial images",
  "longdesc": "ALOHA : submit after you have run ASHS-HarP on baseline MRI",
  "citation": "https://www.ncbi.nlm.nih.gov/pubmed/25181316",
  "url": "https://sites.google.com/view/ashs-dox/mri-data/ashs-pmc-atlas-requirements",
  "tags": [
    {
      "name": "T1-MRI-BL",
      "type": "MainImage",
      "hint": "Baseline T1-MRI. This scan must be the main image in the workspace.",
      "required": true
    },
    {
      "name": "T1-MRI-FU",
      "type": "OverlayImage",
      "hint": "Followup T1-MRI. This scan must be an overlay image in the workspace.",
      "required": true
    },
    { 
      "name": "T1-MRI-LSEG",
      "type": "SegmentationLabel",
      "hint": "Baseline left hippocampus segmentation",
      "required": false
    },
    { 
      "name": "T1-MRI-RSEG",
      "type": "SegmentationLabel",
      "hint": "Baseline right hippocampus segmentation",
      "required": false
    },
    {
      "name": "AC",
      "type": "PointLandmark",
      "hint": "Anterior commissure point can be optionally specified to help align the MRI scan to the brain template.",
      "required": false
    },
    {
      "name": "PC",
      "type": "PointLandmark",
      "hint": "Posterior commissure point can be optionally specified to help align the MRI scan to the brain template.",
      "required": false
    }
  ],
  "parameters": [
    {
      "name": "corr_mode",
      "displayname" : "Correction Mode",
      "hint" : "ASHS offers performs segmentation error correction based on a machine learning algorithm. The 'intensity and shape correction' mode is suitable when your data closely matches the intensity characteristics of the ASHS atlas (see paper for details). Otherwise , 'shape correction' is recommended. You may also choose to disable error correction.",
      "type" : "choose_one",
      "choices" : [
        {
          "name" : "none",
          "displayname" : "No error correction"
        },
        {
          "name" : "shape",
          "displayname" : "Shape correction"
        },
        {
          "name" : "intensity",
          "displayname" : "Intensity correction"
        }
        ]
    }
  ]
}