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RFMix (v1.5.4)

This is a pip-installable version of RFMix, Local Ancestry and Admixture Inference, version 1. You also might be interested in RFMix v2 instead.

Installation

RFMix assumes that you have the openmp support enabled on your C++ compiler.

MacOS

On Mac OS, you'll need g++, which can be installed via homebrew as:

brew install gcc

Afterwards, you can do:

CXX=/usr/local/bin/g++-9 pip install --no-cache-dir git+https://github.com/indraniel/rfmix.git

Linux

Debian/Ubuntu based distributions

sudo apt-get install libomp-dev
pip install --no-cache-dir git+https://github.com/indraniel/rfmix.git